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LotjaGi4g1v0410800.1

Overview

Field Value
Gene ID LotjaGi4g1v0410800
Transcript ID LotjaGi4g1v0410800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TAIR: AT2G13440.1 glucose-inhibited division family A protein; Swiss-Prot: sp|Q55694|MNMG_SYNY3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; TrEMBL-Plants: tr|I1K513|I1K513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78666863..78673799) extracted from Lotus japonicus Gifu genome v1.2.

AGCATGTTAACTTGTTACTGTGTCCTAGTACATTAGAACTGTTGTATTTGTATAGTATAAATATGACAATATAAGGTCCG ATAGTAGCAACCTTGATAGTATGTTGGTAAGCTTGCAGATGTTTGTCGGATTGGGAGGCTCGCTTTAGACATGTCCCTTG GGAAACTAATGCTCTTGTCGATTGTCTCGCAGAGATAGATATTTTTTCTCAGGGTGTATTCACTATTCCTAAGGATTCTC CTGATCTTTAAAGATGTTTTAGGGGTGTAGTTTAGTTTGTTTGTTTAATTTTCCGATGTAAAAAAAATAATAATATGAAA ACTCCTAATTAAATTCTAGGGGGTGTTCTCCATGATATTTTTTTTGTTGTTGTTGAATGTTGACAAATAGCATCTACTTT TTTTTTTAGTACATTGGGTCAGCTCGTTAGGCCCAAAATATTTTAGGCCCATTGCTGTTGCCAAAAAAATAAAATTGATG ATAAGGAAACGGCATCGAACGCCGTCGGATGAGGCAGCAGAACTGGATGAAGATGACAATGAAACACCGCCATTGAAGCC CTTCACTGTTTTCCTGCCACCGCCACTAACCGAATGCCACTATGGCAACGGTGTCGTTTACTCTCCATCTCTGCCGAAAT TTCTGCAAAACGCTCTATCCCACTCCCGCTCGTCTGAGCCTCCGTGACGTCACATTCCGGCGAAGCTTCCGCCGCCGAGT CTCCTTCTCCAGTTCCGCTTTCTCCCGACGCTTCTCTGCCATCGCACCAGGTTCCACCTCCCGAGGTATGAGAATGGAAT GGAATTGAATTTGTTTTCGGAGACTGGAATGGAATTGTTTACTCGTTTGAGATTTTGCAGCAGAATTGGATTGTGAAATT GGAGCACTGGATGAAAAATATGACGTGATTGTTGTTGGAGGAGGCCACGCTGGGTGTGAAGCTGCTCTTGCCTCCGCTCG TTTGGGTGCTAGAACTCTTCTTCTTACTCTCAATATTGACCGGATTGCATGGCAGGTTTCGTTGACTGACAACTCCATTC ATCGTGTTTATGAACTTCACTTGTTGAATTCTTCGATGCTTGATTGAAATGAAGTTAGATGTGTTTGCAATTTCTCATGC TTTATCTTTGATTCGGTTAAGCACAATATGATGTGTGATGCTGACTGTGATGAGTTTGGTGCAGCCTTGTAATCCTGCAG TTGGTGGGCTTGGGAAGTCCCAGCTTGTTCATGAGGTAGATGCGCTTGGTGGTGATATAGGAAAGGTTGCTGATAGGTAA TGTCCAACACTCCTTCATTGCATATTCATTTCTAGTTCTAGATTTTGAATTTGGCATTATCTTCTATGTAATTGCTTGAT TAGAGTGAAGTGGTTTGGGTCCATTAAGAGAGAAGCGAGCTACTGATTTTGAATTTGGCATTACCTTCTATTTTGGACAC GGGAAGGTAATCCTTAAAGAGGGATCTTAATAATTGCAATATGTTTGAAGATGGAGATGAATATATAATAGTTTGGTAAC CTGCCATCCAAAACTAACTAGTCAAGTTGTATTGGATTCAAGTACTTGTCTAAAATACAAAATGAATACATATTCGTTCA TGTTCTAATAAGTTTGGCGTGCCATCATCCTTGATTGACAGATATTCACATATACTATTTTCCAATAAATGGGACCTTTG CGGCCACCCCTTTTTTTGAAAAGAAAAATTGTTGCCTCTAATTGCACCTAAATTTCAGAATATGCTGAAGTAGATAAATT TTAAATACGAATTGGATATAAACAACGACCTAATAAACAGCCATTAGATCTTCTTGATTGACACTGCAAGGCTCAAATCA CGCTTAAATGTAAAGAAGGTTGTTTGTGGATCATTATGCCATTCGATAGTGATCTAGTCAGGCCCAAAAATTCATAAGAT TGTCCTCGTTCTAGTGGCTGCTTTGTACAATTTAATAAATGTTATTGCCATTTTATTTTTTGCATTTTTTATTCTCTGAA TACTGAATTTTTTATACACCATTTTAGATATTTATTGTTGCATTTAGTAAAACTGCTATCGTCCGGAGATTCTTGAGTTG ATTTGTTTATAAAAAACTGCATTTGTGATCTAATCTAGTTTGAAGGTGTTTTGTTGCTCATATACATATTTATGTTTGTG TTTCAGATGTTACTTACAAAAGCGTGTACTCAATGTCTCAAGAGGTCCTGCAGTTCGTGCATTACGTGCTCAGACTGACA AAAGGGAATATGCCTTGTTAATGAAAAGTATAGTAGAAAGGCAAGTTCAAGTCTTGCATGTGATGTGTGCACCTGCTCTT GTTTTTTTTTTTTTTCAATCATGTTTTGTTTTGACTTTATTTTTTGCAGCACTCCGAACCTTTCTATCCGAGAGGCTATG GTCACAGATATTTTACTGGGGAAGAATGATAATGTGGAAGGTGTTTGTACATTTTTCGGAATGAAATTCTATGCTCCATC TGTTGTTCTCACCACAGGAACCTTTATGAGTGGCAAGATTTGGGTTGGTAGAACATCTATGCCCGCAGGAAGAGCTGGCG AGTCTGCTTCACATGGATTGACTGAGAACTTGCAGCGACTTGGTTTTGAAACTGATCGGTTGAAAACTGGAACCCCAGCC CGAGTGGACATTCGCTCTGTAAATTTCTCTGAATTAGAACCTCAGCATGGAGATGAAGAGGTTCTTCCATTTAATCCTAT GTGTAGGTTCATTAGATTCAATTTTGGTTCAAATCGAGTTTTTGTTTAATTGTTTGCACTTTGTAAATGGTTTCGTCTGC AGTCTGTGCGTATGTAAATGTCGGTTAGTATGCCTATAATTAAAAAGTATATATTAGGCATGTCAATGGGGCTGGGTAGG GAAATGACATATTGAATGTCATTTAGAAGATTGGGTGTTTGTTATAGTGGGGTCAGTAAACTGAAGTAGTTGGGCAGTTA TTCAGTCAGCTGAGAAGTTAATAGAGGTAGAGAACCTCTCAAGTTGTTCTCTCGGTGTACAAGGCTGGTTCCTCTTGTTC CAAAGTGGTTCTAGGGTGAACACCAAAGTTCTGTGAATAAAACTAGAATCTTTTTTATCCATTTTTTATCACCATTGTAA AAGTCTCATTGTCAATTTTCTACTTGTTAGTCTGATAGTAGTAAGATCCCACACCGCAAAAAGGCAGAAGTTCTCCATTT GGAGAATCATGTGCACAAGCCATCAGTTGGGCTAAGTTCCAAGATGTTTCTCGAGTTTATTTTCTGATTGTGTTGATTGA TAATACCATTTAGCATGAGTAACTATGCAATAATTTTAGTTCCAATAGTCCCAACAAATTATGGCACAATAGATAAAATA TATTTTGGCTTTCCTCCAGTCCTGTATGATAATGCCCAACTGCTTGTAGTCTGTAATGGAAAGTGTTGACCTTGTAACAC AAAGATAGTGTTTCCTCATTGTATTTTCATAATTGGCAGGTTACCTGGTTTAGTTTTGATCCTGATGTCCATATTGAAAG AGAGCAGATGTGCTGCTACTTAACCCGGACTACAAGTATTACTCACCAGATAATAAGAGAGAACTTACATGAAACTCCCA CTTATGGAGGATGGGTTGAAGCCAAAGGACCTAGATACTGCCCTTCCATAGAAGATAAGGTGTGGTTCAACAATATTTTC TTGCCTTTTTTTGAGAATAAAAGTAAGCATGTTTTTTTTTTTATATTAGTTTAGTATTTACAGAATTAAGATTAGTTACT GAGTCATTCCATACGCAGCCTGAAGCAGAATGTGTAGTCCTAAACATCAGATGAACAATATTGGAATTTTTGTATTATTT TCTGATGTTATATATTGTCAATTTTAGATTGTAAGATTCCAAGATAAAGAGTCTCATCAAGTATTTCTTGAACCGGAGGG TCGGGATGTTCCGGAGCTCTATGTGCAGGTAAGTTGTATATTCTTTTTTCTTTTCTGTAATGCGAGTGAAACTTTTCAAT ATTTTTTGGGTGGAGGGGGTGGGTGATATATACTAATATGGTGAAGATTCATAAAGTAAATCAGCAAACTGATACAGTTC TTGAAAAATGATAATCAGTCACTAAAGTGATTGTAACAAATATACGCTAGTGATGCAGTTCTCGAACTTTAAAAACATCA CTGCATCTGTAGTATAAGCAAGAACCAAATTGTCATGGTTTTTTTCATTTCCTTGCTATTTTCCTGTTGGGGAAAAGTGG GGTTTCATGGCTTATACCTTTTAATCTTGAAAGGATGTCTTACCTCTAGCTCTATACTCTTCTTTTCTTCTTTAATGATT ATTTTAGTAGTCAGCTTACCATAGAATCCCAACCACAAAAAAATGGCAATGTGCATGATTGAACCTTTCTATCTTATAGG GGTTCTCAACTGGTTTGCCAGAGAGACTACAGCTACCTTTGCTAAGAACTTTGCCTGGACTTGAGAACTGTTCAATGTTG AGGCCTGCATATGCCGTGGAGTATGACTATTTACCTGCTCATCAATGTAATAGGTCTCTTATGACAAAGAAAATACAAGG ATTGTTCTTCTCTGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCGCAGGTATTCCTTTTAAGTTCGTTTG TGCTTATAAATATAATATTGTATGTGTTACTAGTTGTATCACAGAGATTAGTAAAACTCTTATTGGATGTTTTGGGCTTT TGGCTTCCTGCTATTCTAGCAAGCTTTATTCTCACAATTTAGTATTTTTCTTCCTTCAGGGCATTGTTTCTGGTATCAAT GCTGCTAGACATGCAGATGGTAAACCACTCATTATTCTTGAGAGGGAGAGCAGTTATATTGGAACATTACTTGATGATCT AGCTACCAAGGACCTACGAGAGCCTTACCGCATGTTAACAAGGTATGCTATTGCTAACCAAGACTACATTTCTATTGATA GATGCATATATGCTGCTTCATCCATTCCATTTATTATTTCTTGACAATTGCAACTTAAAATGTTTGTCTTCTCTTAGCCG CTCAGAGCATCGGTTACTCTTGAGATCTGATAATGCTGATAGCCGTCTCACTCCTTTGGGTCGTGAAATTGGATTGATAG ATGATAGACGCTGGAAACTGTACCAGGAGAAGCAGGCCCGGATTTCTGAGGAAAAGAAGCGGTTAAAAAGTGTCAGGATT TCAGGTGTGTTTGTCTGCTATGCATATGTGGTAACTCGTAACTCTTTCTTGGGAGCTGTTAGTTTAAAAGGGACTAGAAG TTTATTCTTTGGGAAAATCAAGCTGTTGCTTCGAGTCAAAGGCAATTGTTGGACTTGCTTTTGTTGTCAAATCCAATTGT TTTAACCTGTGTTGTAAAATTTGAACTCATCAAATCTTCCGAATCTTCTGTGCATTTTATGTAGTCTGGCAGACAATCCA CTCTAGTTTTAAGTAGAAAGTTTACTTATTTGTGATTGCTAAAATCCATTCTCTTAGCAAAATGTTTGTCTTTTTCCCTT TTAATCTAGTTGGATTAAAAGCTTATTGTTTGATTTCTTATTGATCAACCCTACTCTCCTTACTTTTCTCGTCAGGAGGG GATTTGGCTGCTGAAGTTACTGATCTGTCTGGTCAGCCAGTGAAAGTCTCTTCAACATTGGAAAGTCTTCTTAAGAAACC ACACATACAATATAGAACTCTTGATAACCATGGTTTTGGCAACAAAAACTTGACAAGAATGGAGAAAGAATGTGTTGAGG TCGACATTAAGTACGAAGGTTTCATCTTGCGTCAGCAAAGCCATCTTCAACAGGTAATCCGTTAAACATGTCAACGAGAA ACGTCAATGTTGCTTTGCTCCGTGTCCATATCACTATCCCAAATCATTTCAATTATTGCACATTTTAGAATTTTAGAGCT CTTTTTATTGTTGAGTCTCATTGCTTGATTACCTGTAGATTGTTGCTCAACATCATCGACCACTTCCTGAAGACTTGGAT TACCATGCAATGATAAATTTGTCTCTTGAAGCACGTGAAAAACTTTCCAAGGTTTGTAAGGCATCTATCAAAATAGATAC TTTGGTAATTACAAGTAGGGAATGGGATGGTATGAACTAAAACACATCCTTGGATAGTTGCATCCAGACTCCAGAGGTTT ACCGTATAAATTTAGTAACAACGAAAATAGAAGTATTGAGATATGATGGGAATAAATTGTTTATGGCAAATAACCCTTCA ATGTATAAGCAACTTTATACTGTAACCTATTTTGTACGACTTAACCACAATAACTTCTTTCAATGATTTCAGGTCAGGCC TCAAACCATTGGTCAGGCAACCAGAGTAGGTGGGGTGAGCCCTGCTGATATCACAGCTCTACTCATTGTGCTTGAAGCCA ATCGTAGGAAAGCTCATGAACAGAGGAGGTACAAAATATTGAACGCCATTCGAGCTGATGATACCCAAGATGAGGTGTCT GAAGTTTCTTTGACTGAAACAGTTAGCTCTGGATAAGTTTTCATGCTATTTGATGCCTGAACATTCCATCGATTTTGATA TTTAGCTGTGCCATATTATTTATCTATGATGTAATTGTACATGAATAGATTTACGGAGAATGGAGATAAAGGAAAAGAAA CTAACTGTGTTGGTTTTCCCCCTTTATTTTATGATTAATTGATTATCCAATTGATAAAAAAAATAAACAAATTGAACGAA CTGGGTCGTTTTAGGGTGGACTTTTGTGCACTACCCCTCCCTTACGCTCCCTCCCTCTCCTTACCTTATTAATGAATTAT AAAAGAAACTACACAGTTAATAGATTTGTTTGTTCTGAATTTTGCATGACAGAAGGTTCGAATCTAGCTATATTTAGAGG TGCATTTCTACTATAATATTTCACCGTAGATACACACTGAATTGCTCGAGCCTTGAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0410800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACGGTGTCGTTTACTCTCCATCTCTGCCGAAATTTCTGCAAAACGCTCTATCCCACTCCCGCTCGTCTGAGCCT CCGTGACGTCACATTCCGGCGAAGCTTCCGCCGCCGAGTCTCCTTCTCCAGTTCCGCTTTCTCCCGACGCTTCTCTGCCA TCGCACCAGGTTCCACCTCCCGAGCAGAATTGGATTGTGAAATTGGAGCACTGGATGAAAAATATGACGTGATTGTTGTT GGAGGAGGCCACGCTGGGTGTGAAGCTGCTCTTGCCTCCGCTCGTTTGGGTGCTAGAACTCTTCTTCTTACTCTCAATAT TGACCGGATTGCATGGCAGCCTTGTAATCCTGCAGTTGGTGGGCTTGGGAAGTCCCAGCTTGTTCATGAGGTAGATGCGC TTGGTGGTGATATAGGAAAGGTTGCTGATAGATGTTACTTACAAAAGCGTGTACTCAATGTCTCAAGAGGTCCTGCAGTT CGTGCATTACGTGCTCAGACTGACAAAAGGGAATATGCCTTGTTAATGAAAAGTATAGTAGAAAGCACTCCGAACCTTTC TATCCGAGAGGCTATGGTCACAGATATTTTACTGGGGAAGAATGATAATGTGGAAGGTGTTTGTACATTTTTCGGAATGA AATTCTATGCTCCATCTGTTGTTCTCACCACAGGAACCTTTATGAGTGGCAAGATTTGGGTTGGTAGAACATCTATGCCC GCAGGAAGAGCTGGCGAGTCTGCTTCACATGGATTGACTGAGAACTTGCAGCGACTTGGTTTTGAAACTGATCGGTTGAA AACTGGAACCCCAGCCCGAGTGGACATTCGCTCTGTAAATTTCTCTGAATTAGAACCTCAGCATGGAGATGAAGAGGTTA CCTGGTTTAGTTTTGATCCTGATGTCCATATTGAAAGAGAGCAGATGTGCTGCTACTTAACCCGGACTACAAGTATTACT CACCAGATAATAAGAGAGAACTTACATGAAACTCCCACTTATGGAGGATGGGTTGAAGCCAAAGGACCTAGATACTGCCC TTCCATAGAAGATAAGATTGTAAGATTCCAAGATAAAGAGTCTCATCAAGTATTTCTTGAACCGGAGGGTCGGGATGTTC CGGAGCTCTATGTGCAGGGGTTCTCAACTGGTTTGCCAGAGAGACTACAGCTACCTTTGCTAAGAACTTTGCCTGGACTT GAGAACTGTTCAATGTTGAGGCCTGCATATGCCGTGGAGTATGACTATTTACCTGCTCATCAATGTAATAGGTCTCTTAT GACAAAGAAAATACAAGGATTGTTCTTCTCTGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCGCAGGGCA TTGTTTCTGGTATCAATGCTGCTAGACATGCAGATGGTAAACCACTCATTATTCTTGAGAGGGAGAGCAGTTATATTGGA ACATTACTTGATGATCTAGCTACCAAGGACCTACGAGAGCCTTACCGCATGTTAACAAGCCGCTCAGAGCATCGGTTACT CTTGAGATCTGATAATGCTGATAGCCGTCTCACTCCTTTGGGTCGTGAAATTGGATTGATAGATGATAGACGCTGGAAAC TGTACCAGGAGAAGCAGGCCCGGATTTCTGAGGAAAAGAAGCGGTTAAAAAGTGTCAGGATTTCAGGAGGGGATTTGGCT GCTGAAGTTACTGATCTGTCTGGTCAGCCAGTGAAAGTCTCTTCAACATTGGAAAGTCTTCTTAAGAAACCACACATACA ATATAGAACTCTTGATAACCATGGTTTTGGCAACAAAAACTTGACAAGAATGGAGAAAGAATGTGTTGAGGTCGACATTA AGTACGAAGGTTTCATCTTGCGTCAGCAAAGCCATCTTCAACAGATTGTTGCTCAACATCATCGACCACTTCCTGAAGAC TTGGATTACCATGCAATGATAAATTTGTCTCTTGAAGCACGTGAAAAACTTTCCAAGGTCAGGCCTCAAACCATTGGTCA GGCAACCAGAGTAGGTGGGGTGAGCCCTGCTGATATCACAGCTCTACTCATTGTGCTTGAAGCCAATCGTAGGAAAGCTC ATGAACAGAGGAGGTACAAAATATTGAACGCCATTCGAGCTGATGATACCCAAGATGAGGTGTCTGAAGTTTCTTTGACT GAAACAGTTAGCTCTGGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0410800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATVSFTLHLCRNFCKTLYPTPARLSLRDVTFRRSFRRRVSFSSSAFSRRFSAIAPGSTSRAELDCEIGALDEKYDVIVV GGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGGLGKSQLVHEVDALGGDIGKVADRCYLQKRVLNVSRGPAV RALRAQTDKREYALLMKSIVESTPNLSIREAMVTDILLGKNDNVEGVCTFFGMKFYAPSVVLTTGTFMSGKIWVGRTSMP AGRAGESASHGLTENLQRLGFETDRLKTGTPARVDIRSVNFSELEPQHGDEEVTWFSFDPDVHIEREQMCCYLTRTTSIT HQIIRENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQVFLEPEGRDVPELYVQGFSTGLPERLQLPLLRTLPGL ENCSMLRPAYAVEYDYLPAHQCNRSLMTKKIQGLFFSGQINGTTGYEEAAAQGIVSGINAARHADGKPLIILERESSYIG TLLDDLATKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISEEKKRLKSVRISGGDLA AEVTDLSGQPVKVSSTLESLLKKPHIQYRTLDNHGFGNKNLTRMEKECVEVDIKYEGFILRQQSHLQQIVAQHHRPLPED LDYHAMINLSLEAREKLSKVRPQTIGQATRVGGVSPADITALLIVLEANRRKAHEQRRYKILNAIRADDTQDEVSEVSLT ETVSSG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11806:SF10
60 692 633 0.0 –
PANTHER
PTHR11806
60 692 633 0.0
IPR002218
Gene3D
G3DSA:3.50.50.60
68 297 230 4.2E-83
IPR036188
SUPERFAMILY
SSF51905
73 329 257 5.07E-39
IPR036188
Hamap
MF_00129
73 691 619 39.239
IPR004416
TIGRFAM
TIGR00136
75 688 614 7.0E-261
IPR004416
Pfam
PF01134
76 467 392 7.6E-153 –
PRINTS
PR00411
76 98 23 8.2E-6 –
PRINTS
PR00411
220 229 10 8.2E-6 –
ProSitePatterns
PS01280
342 356 15 -
IPR020595
Gene3D
G3DSA:3.50.50.60
386 527 142 1.1E-50
IPR036188
Pfam
PF13932
470 683 214 8.5E-68
IPR026904
Gene3D
G3DSA:1.10.10.1800
528 617 90 3.9E-17 –
SMART
SM01228
613 684 72 8.0E-34 –
Gene3D
G3DSA:1.10.150.570
637 688 52 2.3E-21 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0410800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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