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LotjaGi4g1v0431200.1

Overview

Field Value
Gene ID LotjaGi4g1v0431200
Transcript ID LotjaGi4g1v0431200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT1G64110.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|A0A0B2Q5I4|A0A0B2Q5I4_GLYSO Putative AAA domain-containing protein C24B10.10c; Found in the gene: LotjaGi4g1v0431200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80530351..80537253) extracted from Lotus japonicus Gifu genome v1.2.

CGCCAAATAAACCGTTCAAAACAAAGACACGTAACACAGTGCAGATATGAGTCACCAATCTTCCACTTTAAAAACTACAA CACAAACTCCAAAGGGATCACAACACAACACAAAACAAATATCATGCTTTCCACCTCTACCCTTCTCCGGTAACCACCAA CACTTGCATTGCACTCACCAAAACAACAACATCACATTACATATTTACATTGATATCAAATTGTACTACATAGTAACAGA AAGTCCAGTGTGTTTGATTGAGTGTTAGAGAAAGAAGAAGAAGAAGAAAACAGAGTGAGATACTCTGTTCTGAAACAGGG GAAACAGAGGAAAGTGATTGTTTCTTTGAAAGTTTCAATTTCAGTGTGCGAGTGATGGAACAGAAAAGCTTTCTGATATC AGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACAAACCGTTGGCAAATGGGGTGGTTGCA ACTTTTCTTCAAACGCTATTACTGCTGACAACATAGAGCAGGAAATGCTCCGGCAAGTTATTGATGGCAGAGAAAGCAAC GTCACTTTTGATAAATTCCCTTACTATCTCAGGCAGGCATTTTTCAACAAAATTTTCCCTTTATTTTGTTTGTTCTTTCT TTTCATGGTTCAAACTTGCATCATAATTTCCTGTGATTATGGAAAATATCATCCATTAATGTTTTCATTGGTAAGAACTA ACAAGTTTGCTGGCTTGAATAATTGTCATGTGTTGTTTCCCTTTGAAATTCTACTTCTGATGCTAGTATGAATGTTAGAA TCATTTTTTCTATTCATAAAATCATGTTCTAGTAGATGTTTATAATATTCCCCTCCATTATTTATTGATGCACATAAGCA TTTTGTGTGTTATTTCCCATCAAATAAGTTCTCTTAAAATTTGTGGGATTCAACTCTATTGAAGGCTTTTGTATTCCACC TTTTTTTTATCCCTCAGTTACATGTATGACAAACTGGCTAAGATGGTTTTTCATATTAACCTCACATGATCTTTTAATGG TGATGATATATGTCAAATATATTTTGTTAAGAAATTGGAACATTCATCTGATGGATATGTGTTACTCATAACAACAATAA TTGAAAAAAAAAAACTATTTACTTGATACTAATCTATGCCTTCATTGATGTGCTCGATGGAGGCTTGATTTGGCCAATCT AATAGTATGTTTGGACCAACTTTGTTTTCTTCATAATCAATTATGACACCCTGAAGCTACTCACGTAAGCTTCTCCTTAG AATTGATTTTGGCTGCAGAATCAATCAAATCGTAGAACAATTTTCAAACATGCTCTGAAGCTATAGTATATATGTACTTA ATCAATTCATATATGTTCAGATATGAGTATAACACTTTCTATCCTTTGTGTTTGATAACAGTGAGCGGACAAGGGTTTTG CTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACACGTAATCTTGCTCCTGCAAGCCGAAC AATTCTACTCTCAGGGCCTGCAGGTTAGTTATCTTTTGTTTTCTGACAAGGGATTGAGATATAGTTTGATGTTTCCACTT TCAATTGTCATTGTTAAACTAACTATATTTTCCTCTACTACTTTTTTATGTCTTGATAGAACTTTACCAACAGATGCTTG CCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCCTAGATTTAACTGACTTTTCATTGAAGGTGTGTACTAGA AGTTTGGAGTCATTTGACTCAATTCTACTTTCTCCTGTTACTTATGTACTTAATGTTTGATCTTTCGTTTGTGCAGATTC AGAGTAAATATGGTTCTTCTTCCAACAAAGAATCTGTAAGATAATCCTGGTTTATTTTTATGGCTTTTACTTGGGTATTC TGTCATCATAGATAAACATGATGTTCTTTTTGACCTAATTTTTTGCTCCCTTTATTCATTTTTTCCCATTCTTTCTATTG TAGTCTTTCAAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTATTTGGGTCATTTTCATTCTTTCCACA AAAGGAGGAACCTAAAGGTACTAATTATCAACATCATCAGAGCCATGATGAAGAGCTACATCCATAACCAACCAAAAGCT TTGTTAATCACTTTCTCGATCTTTTATACAATGTTTTGCTTGCATTGAAGAACAAGTTTAACTTCTTATGTGGAGGGAAG TTATAGTAATGATAGCTTTAATTCATGAGAAGATGCTGCAATTTTTCCCAAGCACAATAGCTAGTATCTCTCGAACTTGT CTCTTTATCAGGACATTAACAGCCAAAATGTTAGTCTTTAACTGACAATTTGTTAAACGGGAAGGCGCATAATAATCACA CCATTGACCAGGAGCTTTTTGTTGCAGGTAAAATGCACAGGCCAAGCAGTGGAATGGACCTACAATCAATGTAAGCAGGG TAGATGAATTATGTTCTGACTGAAAAGAATTATATAACTTGCATAATAGTTTATTCATATCATTTATAATATCTACCTTT TGATTTGCAGGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCCGAAGGAATGCTGCTTCTTCATCGAATATTAGCGGC CTTGCTTCGCAAAACAATCCTACAAATCCAGGTGATTTAAGAGATCTTGTAAAGAGATTGATGGTGATGGTTTTGGATTT GGAATTTCAATCTGCATCATTGGTTTTGTTCTTGAATATCTTTTTGGGAGAGATCATTTTCATATTTGTTGAGAAACTGT CGATTTTATAATTCAACCTTTTGTTCTCTCTCATGATTTCTTATATCCTTTAATTCCCCTTCAGCTCCACTGAAGCGCAC AAGCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTAATGTTACTTTCAATTTATAAAGATTTCA TAACCATGTTGTTCAGAGCTAAACAAGGTGTTTGATATATTCCTCCACAAACTTATTAATAAGAGGAAATTGTACCTGCA GGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGCTGATATGTTATTATACAGATCACAAA GGATATATAACATGTTCCAGAAAATGTTAAAGAAACTTTCTGGACACATTCTGATTCTTGGCTCACGAGTTCTTGATTCT GGTAATGACTATGAAGAGGTGGATGAGAAGCTTTCTATGCTCTTCCCATACAACATAGAAATCAGACCCCCAGAAGATGA GTCGCATCTTGTTAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCA TGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAAC TATATTGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACT CATTATTTCTTCCAATAGGTGAGACTGCAAACTTTTTTTTAATGAAGTTCAGACTTGCAACCTAAATTGGATGGAAGATC TATAATTAATGTACTTACTATTTCTTGTGGAACAGTTTGTCCCATGCATTGGGTATATTCCACAAGGGGAAATTTGGTGG TAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGAAACCTGAGGTTTGCTTTACTTTTCATGTTTGTA AATTGAGAACAACACCTAGTTGGTATTAATATGCTTTTATTTCTCTCTGTCTCTCTCATGGACATAAAAAAGCAAAAGGA GGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAAGCAGAAAAGTCAACTT CAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGTAAGCCTTTTGTTTCTCTTCATAATTTCG ATTGATTTTGAATTAAACTGATTTTGGTAAAAGTGTTTGTCGTAAAAGTGAAGTGATTTTATGTTAGGGTACTTTTATGA GAAAAATGATTCTTTGGAGTAATATTGTGAAATCCAGTTATGAAATCCCAAAGTTGATTATGTACATTGCAAAAGCTATT CCCTCTAGCTTCTCCATAGAATTGGTTTTGGATCGAGACTAAAACCAATTCTTTAAGGCAATTGACAGGCAATTATAACC ATCTAAAAGTGATTCTGGTAAATGAGAGTTGATTCTAAGACTCCCAAGTCGGAGTTCACTTCATATCTTTGGGATTTAGG ACACTCCTTTCTTATCAAACATTTACTGTCCATTATTGACTTGCAGGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAA TAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCTTAGAAGAGACCAAAGAATCC CTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTAAAGCCTTGCAGAGGAATATT GCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGCTGGAGCTAGTTTCATCAATG TATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTTTGTTTACACTTGCAGGCAAG GTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGAGTAGGGGAGCATGAAGCCAT GCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGAGCGTATCCTTGTCCTTGCTG CAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGGTAGTTACCTCTACTAGTTCTTAAA TTGCACTTGAATCATTTTAAACTATGTTTAGATATCTGTCGTGACCAGTGCAACTAACGTGCACTTTAAGATTAAAAGTG AACAGATTTCTTCTTATTGGTTAGGATGAAAGCTCGTCTACGTTGCACTGAATCGATATCCAAACACATACTTATATGCT GCCAGTTTCCATTACATTTCTATATTCTTCATATATGTGTATAGTTTACTTCCTCATTGTTGTGATAAACTTTTTGTTAA ATGAAGTTGATGGCATATATAGCTGCTATCTATAATATATGACTAGAGTACCCTGAAGGCCTGAAGTTGAAGAGTAGTTC TTCATTTGGGTTTATTCTGATGCAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTA GTGGCAAAGGAAAAGGTGGACCAGGAACTTGATTTCAAGGAACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCT GAAGGTTTTTGTTGTTTTCTGATATTGTTCCTATGCATGTGACTGTACTATGTAGTGCTATTGTAATTTTGTTATATTGT GCTGTGATTATCTCATTTATTCACTGTCATTAACTCTTCAATTTAGAATTTATGCACAACTGCTGCTTATCGGCCTGTTA GGGAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGTAACTGTGCTATATTTGTATTTAATATCTTGTATGTATTACATA TCCTGACCTGATCATGTGTTCATCTGGATGCTGTTTTTCCCAGGATAAAAAGCAGAAAACTGCCATGGAACAGAATAAAG ATGTCCAAGACAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTCAAGATACAGAAAAGGAAGTTCAACAA GAAAGAGTTATTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTAACTATTTCTGTTTTATT AAAATAAAGGATTTTTATTTTGTAGGATTCATGTTTTTTCATGGATATTTTTGGATTTACATGATGTATCTTTGAAGCTT GAACTCTTTCAGCTATGTTTGATTTGTTTGCTTATGTGGGCATAAATGATGTGTCATGAACCAACTATTCCAAAAGCGTT AGCTATTAGCTGAAGATACATAAATGATTTTAATTATATTTCTTACACACTATCTCACGCAAGAGCTTGTGGACAGTAGT GGACAATGCACAGGCTCATCAATTTTGTGCTGAAATTTAACTTAGTTGCAGTAGAAGAATGTGACAATAGAGATCGAACT CTATATCACTAATCAAGTGATATGATCACATTGGGCTTTTTCTATTGTAGTAGAATGTCTAGTTATGTTGTGACTCTGAA TTGAGTAATGCTTCATCTCAATATCCTCTTGGACTGCAGGTTGCTGCAAGCTTTGCAGCAGAGGGGGCTGGAATGGGTGA GCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACAATTGTCCTACTTCCTTTGAAAATTAC TGAGGAACAGAGAAAATTCACAGGTTAACATTTTCCACAGGATAGACACTCATCAAGCAACTGAGAATTTGCTAGTGATA TTATTTTACCCATAGGCCAGTTGCAAGGTTAATTTGTGGTGTTATCTATAGTGTGTTACTTTTTCTGTCAACCCCTATAA GCAGAATGTGGAGTTATTTATTAGCATTGTATGTAGTGTTTGTTGCACCTGTAATGTAAAATAGAGAAAGGATATTGTCA ATTAATATATTGGTTGAAGAATTTTTAATAATTATTTTGAAAAATAAACTAGACTAGTTTATGTTTTTAAACTTTAAATA CAGTATATAGCCTTCGTTTGCAAGTTGTATTTTGGGAGGGGATAATGGTAGGCTTATGAGAAGCAAGCTTTCCCCTTGTT TGAAAATTTCTTAAAAAGGGATA 

CDS sequence (LotjaGi4g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACAGAAAAGCTTTCTGATATCAGCGCTGAGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCTTCTGGACA AACCGTTGGCAAATGGGGTGGTTGCAACTTTTCTTCAAACGCTATTACTGCTGACAACATAGAGCAGGAAATGCTCCGGC AAGTTATTGATGGCAGAGAAAGCAACGTCACTTTTGATAAATTCCCTTACTATCTCAGTGAGCGGACAAGGGTTTTGCTG ACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACACGTAATCTTGCTCCTGCAAGCCGAACAAT TCTACTCTCAGGGCCTGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTC TCCTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCTTCCAACAAAGAATCTTCTTTCAAAAGA TCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTATTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGAACCTAA AGGTAAAATGCACAGGCCAAGCAGTGGAATGGACCTACAATCAATGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCC GAAGGAATGCTGCTTCTTCATCGAATATTAGCGGCCTTGCTTCGCAAAACAATCCTACAAATCCAGCTCCACTGAAGCGC ACAAGCAGCTGGTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTTCTGGCTTTTGTGTCAAAAACCTATCC CATTGTGCTATATCTGCGGGATGCTGATATGTTATTATACAGATCACAAAGGATATATAACATGTTCCAGAAAATGTTAA AGAAACTTTCTGGACACATTCTGATTCTTGGCTCACGAGTTCTTGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAG CTTTCTATGCTCTTCCCATACAACATAGAAATCAGACCCCCAGAAGATGAGTCGCATCTTGTTAGCTGGAAGTCTCAATT GGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATT GTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATTGAAGAGATTATTGTGTCAGCAATT TCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTGTCCCATGC ATTGGGTATATTCCACAAGGGGAAATTTGGTGGTAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGA AACCTGAGCAAAAGGAGGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAA GCAGAAAAGTCAACTTCAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGAAGTTCCTCCTGA TAATGAATTTGAGAAGCGAATAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCT TAGAAGAGACCAAAGAATCCCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTA AAGCCTTGCAGAGGAATATTGCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGC TGGAGCTAGTTTCATCAATGTATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTT TGTTTACACTTGCAGGCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGA GTAGGGGAGCATGAAGCCATGCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGA GCGTATCCTTGTCCTTGCTGCAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGAATTA TGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAGGAAAAGGTGGACCAGGAACTT GATTTCAAGGAACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCTGAAGAATTTATGCACAACTGCTGCTTATCG GCCTGTTAGGGAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGATAAAAAGCAGAAAACTGCCATGGAACAGAATAAAG ATGTCCAAGACAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTCAAGATACAGAAAAGGAAGTTCAACAA GAAAGAGTTATTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGC AGAGGGGGCTGGAATGGGTGAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACAATTGT CCTACTTCCTTTGA 

Protein sequence (LotjaGi4g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEQKSFLISALSVGVGVGVGIGLASGQTVGKWGGCNFSSNAITADNIEQEMLRQVIDGRESNVTFDKFPYYLSERTRVLL TSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSSNKESSFKR STSETTLERLSDLFGSFSFFPQKEEPKGKMHRPSSGMDLQSMGAESSCNPPKLRRNAASSSNISGLASQNNPTNPAPLKR TSSWSFDEKLLIQSLYKVLAFVSKTYPIVLYLRDADMLLYRSQRIYNMFQKMLKKLSGHILILGSRVLDSGNDYEEVDEK LSMLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAI SYHLMKNKDLEYRNGKLIISSNSLSHALGIFHKGKFGGKKESSDTSKLEDQAVKPEQKEEGNVTKPAEKSEGAAPAKNAE AEKSTSVGKGDGEISVPASKAVEVPPDNEFEKRIRSEVIPANDIDVTFSDIGALEETKESLQELVMLPLRRPDLFTGGLL KPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAGKVSPTIIFVDEVDSMLGQRTR VGEHEAMRKIKNEFMAHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLVAKEKVDQEL DFKELAIMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKILDKKQKTAMEQNKDVQDRQGEKSMVGSTQDAQDTEKEVQQ ERVITLRPLNMQDFKEAKNQVAASFAAEGAGMGELKQWNELYGEGGSRKQQQLSYFL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 26 26 -
PANTHER 1 857 857 0.0
PANTHER 1 857 857 0.0
Phobius 1 5 5 -
Phobius 6 17 12 -
TMHMM 7 29 23 -
Phobius 18 26 9 -
Phobius 27 857 831 -
SUPERFAMILY 75 368 294 7.09E-5
MobiDBLite 182 239 58 -
MobiDBLite 199 239 41 -
MobiDBLite 436 466 31 -
MobiDBLite 436 494 59 -
SUPERFAMILY 525 765 241 1.26E-59
Gene3D 525 825 301 2.2E-94
SMART 562 699 138 2.0E-19
CDD 564 697 134 3.75687E-24
Pfam 566 696 131 1.1E-37
ProSitePatterns 669 688 20 -
Gene3D 699 824 126 2.2E-94
Pfam 720 754 35 1.3E-9
MobiDBLite 764 780 17 -
MobiDBLite 764 799 36 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0431200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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