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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0454600 |
| Transcript ID | LotjaGi4g1v0454600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate--tRNA ligase; TAIR: AT4G33760.1 tRNA synthetase class II (D, K and N) family protein; Swiss-Prot: sp|F4JJT9|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T3C0|A0A151T3C0_CAJCA Aspartyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0454600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82638653..82642756) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCCTGTTTCTCAAAGCACTGCCTCTCATGGCTCTTCGTCCCAGACCCTCCTTCTTCTTTCTCTGCAGAGCAATTCC AAGGGAACTTTCCACAACCAGAACATTTTCTTCTGTTTCTGCTTCAATTCAACCATCACCAACTTCTGCTAAACCCTTCA ACGAATCTCTTCAATGGGTTTCCAGAACTTCTTACTGCGGTGAACTGTCTTTCAACCATGTCGGTAAACAGGTCCGCCTT TGTGGCTGGGTTGCACTTCACAGGGTCCATGGTGGTCTCACGTTTCTCAATCTCAGAGACCATACTGGCATTGTTCAGGT ACTAATGCTGCTTCTGTTATCTAAACCTTTTGCTCTTCTTTTCTTTTCATGCATACTATTTATTTGTATATTCTATTTAT TTCAGGTTACAACTCTTCCTGATGAATTTCCAGATGCTCATTCTGCTATCAATGACCTCAGGCTTGAGTATGTGGTTGCC ATCGAAGGTGTAGTCAGGTCTAGGCCAAGTGACTCAGTTAATAAGAAGATGAAGACGGGCTTCATCGAGGTATATGTATC ATTAATCAAGGGGAATTTGGATTCACAACAGTTTGGTTCTTCTGCATTTCTAGTTTATATTTGGTTGTTAATAATATCAA GATTGTTTGAATTTTTATTTATTTATTTACTGTTTTCTTCTTATCTACCTAAATTTATATGTAAATTTGTGTGACAGGTT GCTGCAAATACAGTTCTAGTGTTAAACTCTGTAAATTCAAAATTGCCCTTCTTAGTTACTACATCAGATGATGCTAAAGA ATCTCCTAAAGAGGAAATCCGATTGAGGTAATGGCCATCAAGTTGATTTTGATGTTGATTGGTTTGTCATACAAGTGCGC TCATTATGATTCAAAATCTCGCTATTTTACTTGTCATTTTGTTGGCAAACTAGACTTCTTTGCTTTGATTTGCTAAAGTT ACATTATTGGATCATTTGATTTTATCTGATCTTAGGTTTCGTTGATTGATCCTATTAATGCTGCCATCTGTGTTTACATG TTAAAGAGTCATTTATTTTGTGAATTTCCTTTCTGACGTACGTCACGTACCCTAAGTTTTTATGGAAAAGAGATATTTTA GTGGATGGCCTATTATATTTTTAAATAGTACTCGTTATTTGTATTATGCAAGTTTATGGGGGATCCATTGCTTTCGGTTA CTTGTTTACAGGTATCGATATCTTGATCTAAGGAGGCTGGAAATGCAGTCCTACATATTGCTGCGGCATGAAGTGGTTAA ACTCATTCGAAGATATCTAGAAGACATGCATGGTTTTGTGGAGGTAATATCCTGTGAGTTCATCATCGAGTTATTTTCTC TTCATTAAGTAGCTGTTTCTCTTCACTCCTCTCTTACTTCACTTTGGTTGTTGGTATTTGGTGTCCTGTGTTGATCTTTA CCTTTTCTTGGTCATAAGGTAGATAGAAACTCCAATACTGTCAAGATCCACACCTGAAGGTGCCCGGGATTATTTAGTTC CATCAAGAATCCAGGTATTTAGATCTGTTTGCCTCTTGCTCTTGCTTGTGGTTATTATTTTTAGCTTTTGTTTCTCAAGA TTGTAGCTAAGTGGCTATGATCTGTATATATCTCAGAAAATATTTTCTGTTGCTATTTCTTGTTTAAAGTTTTAATTACA AAAATAAAATGTCATCTCGTTTTTACTTTTTCTTGTTTTCAAAGTTTTGTATAGAAAATAATGAAAACAATTTTTTATTA TTTTCCTGTATAAAATTTTAAAAATTGGATACAAAGTCAAAATAAGGCGGCATTTTTGTAATTAGAATTGGAAACAGGAA ATAGAGAAAGATAATGGAATTGCTAACCAAGCAGGCCCTAAGTCACTCTCTGTCTCTCTTCTTATTGTTTATGTGAGGTC ATTTTTTCTCTTGTTGATTCACTATCATATGAATTATGAAGCCAGGAACGTTCTATGCCTTGCCTCAAAGTCCTCAGCTA TTTAAACAAATGCTGATGGTATCTGGTTTTGATAAATATTATCAAATAGCAAGGTAATATTTTCTTTTTATGTTTGAGTC TCTATTTTTATTGTGACTCTTCTGCTATGGAGGATTTGTTATTGTTCTCCATGCAATATTTTTCCCTTTCTCGCTCTACT ATTTTTTCCCCTAAGAAAATGCATTTGGTTGGAGTGAACTTACATGCACTAAGAATATAATGTTCTTTTTTTTGTTAGCT AACCAACCTTAAGAGAAATTATTGTGACGCATTCCTTTTCTGTCGGACAAAATGCAATTCACTTTTTGCCAGATGTTTTC GAGATGAAGATTTAAGAGCTGATAGACAACCTGAGTTCACCCAACTAGATATGGAATTGGCTTTTACTCCTTTAGAGGAT ATGTTGACTCTTAATGAAGAATTGATGAGAAAGGTTAGTTTTTCTTTTCATCAAACGTATCTAACAGATATAAAAAAATG CATTTTCCAATTATTTTGAAGCAGTAATGTAAGCATATATCGAGCTGAAAACTTAGAATTGAGGAATATGGTATAAATAG ATGGGAACTTCGTATAGGCTTTGTTTGGGAGTTTTTAGGTGAGGGGAGGGCAAGAGAGGGGGAAATGGGGGGTAAGCCCG TCCCTTTGTTTGGAAATTCCCAGTTCTCCAAATCTTCCAATTTGGGGAAACTAAAAATACAACTAAAAGAGGGTTTTGGA GGAAGTTTTCAAAAACACCCGAAACCCTTCCCGTCCTTTTTAAAATCTCCCAAATAAAGAGAGGGCTTCTCATAAGCCTC CCCCCCTTCCCTCCCCTCCCCTCCAAAACTCACATCACAAACACACCCTTAGTGATTTGAAATGTCAAAGCATTGTTGAA GATTTAGAATCAGGTTATCAACTGAGAATGGAGCATAACTAAAGAAGGACTTTAGTGGAAAACGCACATCAGTATTGTTC AAGTACACATTAATCCTATTAAGAAATCCTGAAAGAAGACTTTGGGTCATGTAGCTAATTTGTGGGTGATTGAGGGCAGT TTACTGTGCTGTGAGAGTTTACACAATTGGAAGACTGTCTGTGGGGCAAATATATTTTGTGGCTAATATGAAGCTGTTCA TTTCCCAGATTAAAATATTTGCTCATTACTTGGTGTGATTAAGAAGTATTTCTTGCAGGTTTTTCGTGAAGTTAAAGGCG TGGAATTACCAAATCCTTTTCCCAGGCTGACATATGCTGAAGCAATGAATAGATATGGTTCAGACCGGCCAGATACTAGA TTTGAACTTGAGTTAAAAGATGTAATGATCTTTCTTTCACCTCGTCCATAGCACTAGTGGTTTCTAGCATATGATGGATT TCAATGATCTTCTCTTGTGTTCATATGTGTATGATAGTTTTTGAAAATAATTGTCATTCTGTACTTTAGTTTGTATTTCA GTAACTCAGCTATATTTGCTTTAGCAATCTTGCTGAAATATAAATTTCACTGGGCTGCAGGTATCTGACATTTTCTCAGG GTCTTCCTTCAAGGTTTTCTCTGATACCTTGGAGAGTGGGGGAGTTATTAAAGTGATATGTGTACCTTCTGGTGCAAAAA CGTACTCAAATTCAGCTCTTAAGAAAGGTGATATTTACAATGAAGCAATCAAATCTGGCGCAAAGGGTTTACCTTTTCTT AAGATCTTGGAGAATGGTAAAGGATGAATTTGGTACTGATATTTATCTTATGATATTCAGAGACATATTGTTATCTTCCA TTGTTTTTTGTGTGAACCTTTGATTGTAGGGGATATTGAGGGAATTGCTGCTTTAGTATCAAGTATGGATCCTACAACTA GAAAGGATTTCATAGAGCGATGCTCTGCAGGACCAAGTGATCTTATCCTATTTGCTGTTGGTCATCAGGCATCTGTAAAC AAAACTCTAGACCGTCTTAGAGTTTATGTGGCACATAAGCTAGGTTTGATTGACCATGTAAGTTGGTGATCAGGTTTGAC TTTCCAGGCAAAAATAAATGCTCTCTTTCTCCAATCTCCACCATTTCTCTAATATTATTTTCTTTTGTTTTTTAGGGCAG ACATTCAATTTTGTGGATCACTGA
CDS sequence (LotjaGi4g1v0454600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCTGTTTCTCAAAGCACTGCCTCTCATGGCTCTTCGTCCCAGACCCTCCTTCTTCTTTCTCTGCAGAGCAATTCC AAGGGAACTTTCCACAACCAGAACATTTTCTTCTGTTTCTGCTTCAATTCAACCATCACCAACTTCTGCTAAACCCTTCA ACGAATCTCTTCAATGGGTTTCCAGAACTTCTTACTGCGGTGAACTGTCTTTCAACCATGTCGGTAAACAGGTCCGCCTT TGTGGCTGGGTTGCACTTCACAGGGTCCATGGTGGTCTCACGTTTCTCAATCTCAGAGACCATACTGGCATTGTTCAGGT TACAACTCTTCCTGATGAATTTCCAGATGCTCATTCTGCTATCAATGACCTCAGGCTTGAGTATGTGGTTGCCATCGAAG GTGTAGTCAGGTCTAGGCCAAGTGACTCAGTTAATAAGAAGATGAAGACGGGCTTCATCGAGGTTGCTGCAAATACAGTT CTAGTGTTAAACTCTGTAAATTCAAAATTGCCCTTCTTAGTTACTACATCAGATGATGCTAAAGAATCTCCTAAAGAGGA AATCCGATTGAGGTATCGATATCTTGATCTAAGGAGGCTGGAAATGCAGTCCTACATATTGCTGCGGCATGAAGTGGTTA AACTCATTCGAAGATATCTAGAAGACATGCATGGTTTTGTGGAGATAGAAACTCCAATACTGTCAAGATCCACACCTGAA GGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCCAGGAACGTTCTATGCCTTGCCTCAAAGTCCTCAGCTATTTAA ACAAATGCTGATGGTATCTGGTTTTGATAAATATTATCAAATAGCAAGATGTTTTCGAGATGAAGATTTAAGAGCTGATA GACAACCTGAGTTCACCCAACTAGATATGGAATTGGCTTTTACTCCTTTAGAGGATATGTTGACTCTTAATGAAGAATTG ATGAGAAAGGTTTTTCGTGAAGTTAAAGGCGTGGAATTACCAAATCCTTTTCCCAGGCTGACATATGCTGAAGCAATGAA TAGATATGGTTCAGACCGGCCAGATACTAGATTTGAACTTGAGTTAAAAGATGTATCTGACATTTTCTCAGGGTCTTCCT TCAAGGTTTTCTCTGATACCTTGGAGAGTGGGGGAGTTATTAAAGTGATATGTGTACCTTCTGGTGCAAAAACGTACTCA AATTCAGCTCTTAAGAAAGGTGATATTTACAATGAAGCAATCAAATCTGGCGCAAAGGGTTTACCTTTTCTTAAGATCTT GGAGAATGGGGATATTGAGGGAATTGCTGCTTTAGTATCAAGTATGGATCCTACAACTAGAAAGGATTTCATAGAGCGAT GCTCTGCAGGACCAAGTGATCTTATCCTATTTGCTGTTGGTCATCAGGCATCTGTAAACAAAACTCTAGACCGTCTTAGA GTTTATGTGGCACATAAGCTAGGTTTGATTGACCATACATTCAATTTTGTGGATCACTGA
Protein sequence (LotjaGi4g1v0454600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLFLKALPLMALRPRPSFFFLCRAIPRELSTTRTFSSVSASIQPSPTSAKPFNESLQWVSRTSYCGELSFNHVGKQVRL CGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPDAHSAINDLRLEYVVAIEGVVRSRPSDSVNKKMKTGFIEVAANTV LVLNSVNSKLPFLVTTSDDAKESPKEEIRLRYRYLDLRRLEMQSYILLRHEVVKLIRRYLEDMHGFVEIETPILSRSTPE GARDYLVPSRIQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLTLNEEL MRKVFREVKGVELPNPFPRLTYAEAMNRYGSDRPDTRFELELKDVSDIFSGSSFKVFSDTLESGGVIKVICVPSGAKTYS NSALKKGDIYNEAIKSGAKGLPFLKILENGDIEGIAALVSSMDPTTRKDFIERCSAGPSDLILFAVGHQASVNKTLDRLR VYVAHKLGLIDHTFNFVDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 499 | 474 | - | – | |
| PANTHER | 30 | 493 | 464 | 6.1E-226 | – | |
| PANTHER | 30 | 493 | 464 | 6.1E-226 | – | |
| Gene3D | 53 | 168 | 116 | 1.5E-32 | – | |
| TIGRFAM | 61 | 494 | 434 | 1.3E-153 | ||
| SUPERFAMILY | 62 | 164 | 103 | 1.64E-27 | ||
| CDD | 62 | 202 | 141 | 9.78551E-62 | – | |
| Pfam | 78 | 142 | 65 | 4.6E-11 | ||
| Gene3D | 185 | 497 | 313 | 6.6E-111 | – | |
| SUPERFAMILY | 186 | 380 | 195 | 3.58E-62 | – | |
| Pfam | 186 | 362 | 177 | 2.2E-65 | ||
| ProSiteProfiles | 208 | 385 | 178 | 15.165 | ||
| PRINTS | 259 | 271 | 13 | 2.5E-9 | ||
| PRINTS | 276 | 289 | 14 | 2.5E-9 | ||
| Gene3D | 341 | 490 | 150 | 6.6E-111 | ||
| SUPERFAMILY | 358 | 490 | 133 | 1.8E-26 | ||
| Pfam | 377 | 476 | 100 | 3.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Molecular function | Ligase activity | Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. |
Expression pattern of LotjaGi4g1v0454600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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