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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0458800 |
| Transcript ID | LotjaGi4g1v0458800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82972665..82976589) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAAAAACCCTAAACCCGAACTATCATCATCATCTTGTACCCTGAGCTGAATATTCGAAACCCTAAATCTAACTCTAC TGGTTGAGCTTCCGCCGTACGAAATTCCTCTGGTAAGCACGCTTTCTTCTTCCATTTTCCTTTTGAACAATGAAAATCAT CGCGCTCTCTGCAAATAACAGTACTGAAATGTGTTGAATGTACAAAACAATCTCATCTAAAGTTAATTGGGTCTGCTTTA CCATCTAGAGTTTTCTACAAAGGTAGGGTGTTGCAATACAAGTAATGCGCCTCAGATTGTCTTAGTGTGCTTAAATTGTC TCTGATGTTGATCCGATCTAGCTTAGACAATTCATGATGAAAACTGTTTTGGAGACCTGAACTGAAGAGACACAGTCTAT AATAATTCATGTTTGTTTTTCATTCTAGTATGATTAAAAATGATTTTATGTTCCTGAGTGCTTATTCCTTGGATCTGAGA GTTTAGGAGTCACATGGGGTTCTTATGCTAATGTTTTGGGGTTTTCTGTTAAGATTTTTACACCAATCCTAGTCTTGATC TGAACCCTTGTTGATTTTGATGGCCTTTGAGTTTGAATTTTTACTTTCGTTAATGTCATGTTCACTAGTATTTATATTCT TGCTTTCATCTCAATACCAGTAAAAAAGTCTCTGAGGATGATCAGAAATATTACTTTCGTTCTTCCGAGTTGTCCATGCG GAAAATTCATGGAGACCTGAACTGAAGAGGCTTTATTACACCTCCTCCCTCACTGTCCCCTTTGAGATAAGTAGTGTTTT GTTTTGATAAAATTTATATGCTAGTTTTGGGGTTTTCTGCTAAGTTTTGACACAAACCATCCTGTTTTTTTATCTGAATG ATCTGAGTTTTTCTTAGTTTTATGAATCATGTTCATTAGTCTACATATGTGGTTCTATCTCAATACCAGTTAAAAGAGTC TCTGAGGATGATCAAAAAATAACTTTCGTTCTTCCGAGTTATCCATGCGGAAAATACATGGAGACCTGAACTGAAGAGAC TTTCTTACACATGTCTTCCTTCATTTTTTTGTTTACTATCTTGTTTCACAATATTATGTCCCTTCTTCTGCTTGTATGAG TTTTATTGTCTGAAGTCTGTCTTGCCCTGAAACGAACTAAATAGCCTTTGAGGATGATAAAAAAAATAACTTTCGTTCTT CCGAGTTACCCATGCGGAAATTACATGGAGACCTGAACTGAAAAGGCTTTCTAATACATCTTTTCCTCCTTGCTCCTCCC TATGAGGATGATTAGTCGTCTATTTAAACTAATGAAAACAGTTTAAGCTCTTTTAATTCAGGTTTGTATTACTGTTTTAT TATCAATTAGCTCCTGTACTTGTGTATATTATGTATTCTGAACTCTGTCCTGCCTTGAACCATTCAAATATAGCCTCTGG GGATGTTAAAAAAAATTAACTTTCGTTCTTCCGAGTTGTACATGCGGAAAATACATGGAGACCTGAACTGAAGAGGCTTT CTTACATGTTTTCCTTCAGTTTTATGTTCACTATATTCAGTTGCTTTAGCTAAGCTTGATTGCAATATACCTGTTTGCTT ACTGCCTTATTAATGGATCAACTCTTCTGCTTGTATGAGTTTAATTGTCTGAAGCCTGTCCTGCTCTGAAACCAACCTAA ATAGCCTCTGAGGATGATCAGAAAAATAACTTTCGTTCTTCCGAGTTATCCATGCGGAAATTATATGGAGACCTGAACTG AAGAGGCTTGCTAATCTTTTTTATCTTTCCCTTTGTGCCGCATCTTCCTTCTATAATTTCTGTATTATGATATTTTTATT CATTGGAGTTTATTTAAAATTTTAGTCTTTTAATGCCTTAGTTTCTTCCTTTCTTGCTTCAATTTATTATTTCCGATTTT CTTATGGTAGTTTCCATTTTATTTGCAGCATTTTGCTACTGCCGTTCAGTTCCTGCTAAAATGAGGTATTTCTTCTTTTC CTGTCCACTTCGTGAATTCTGTATTATTATCCTTTTAGTTATTATCTCATATTTGACATTTTTGTTTTTTTGAACCCCTA CTTTTGCTCTCAAGCCGGCCAATGGAGGAAGATGTAAGTTCTTTTATTCTTCAAGGATATTTATCATGTTAAGTTTGACA TCATGATCTTGACACTGTACTTGTTGTGCATGTTTTCCATCTTCTATCTACACAGCCTCGTGTGCTGAACATCTGTATTT ATGTACATGAAATCATGGTTTTGTACAATTTGACCTGATCTTGAGTAGCATCTTATCTTTTGTATTTCCCGATATCAGTT ATACCATCGCTTTTCCAGGGAGGAAATTGATTTTTATTTGTGGTGATGGCTAAATCGTTTTTCCTAGATTGGGTTTCAAG TTATGAACAAAAAATTCATCAGTAGGATTTCCAAGCATGTAATTTAGTTGACATGTTTCCATTAATTAATTTGGTGATAT GTGACCATATGGCCTGGACATTTCCTTTCTTGTACAGACGACTAAGAATGAAGAAGAGGAATTCAACACTGGACCACTTT CTGTTCTGATGATGAGTGTTAAAAATAATACTCAGGTATGTTTGTTTTACATTAGACTAGATAGTACTATGGATTCTGAG GCAGTAGAAGGCATTTTATGTGAGGTTTTACCCTAACACGTCAACCTGTGTAGGTACTGATAAATTGTAGAAATAACAAG AAGCTTCTGGGTCGTGTCAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTTAGGGAAATGTGGACTGAGGT ATTCTTTGTTTATTTTGATTTTCTTTACCCTTACTTAAGCCTGATTTTATATGGAACAAAGAGCTCTTAGTTTATCTGCT AGAAAAAACACTTGATAAGATCCAATAAGTGCTCTTTTGCCTGTATCCAAACAAACGAGCTCTAAGAACTCATTTGGATT TGGACTAAAAAGGTACTTATTGGAGTTAATCTAGCACTAGAGATAAGCTTCAATTTGTGCTCTTTGATTTGCGTACGAAC AGGTTTTACTACATCAGCTAAATGTGTTGTGTGTGTGTAACCAGGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAA CCTGTCAACAAGGACAGGTTTATAAGTAAAATGTTCCTTAGAGGGGATTCTGTGATAATTGTTCTCAGGAACCCCAAGTG ATGACTTGATATGGACATATAGATAGATTGTGATGTGGGTCTATTCTTCAATGACGAGTTCCATTTGTATTTGGATATCT ATTTTCATTGGCTGCATCTAAGTTGGATGTGGAGGGCACTTTCATTAATGGACTCTAGTATTGATTTAGTAGCAGAATCC TCTGATATACATCTTATTTTGTATTTTTGTATTGATGTCTGCACCTGTATGACACAAGCAGCTCTAATGAAAAATTGTTA GTGATCAACTGCAGTGGAAGAAGGTTGTAGTGCAATGATCTTCTGTGGGATTCATATCATTTGTGTTTCATTAGTTCTTT TTCTTTCTCTTTGCACAATGCATTATAAATGTTAACAAAGGCAAGAGAAATTGGAAGCAAAAGTATTATACACCATCAAT GCTCAGAAATAGGAAGCACGGGTCTTTGTGTTTGTGTAGAAGTTAAATAAAAGTAAAGGTTTTGTTTTGTGAAATTGATC ACGGAGTGTTGTGAATTTCTTTAAATGGAATGCAACTTCATTTTATTTTATAATTTACACATTTGATTTAAGTCATTATC CAATCCTTGGTGTCCCCTATCGCTTTTACCAAATTTTTAAAGATTAAGGATAGTAGTTAAAATTAGTTATGGGCAATAAA TTTGTAGTTTTTAAAAAAAACTTTTAAAAATCACCTTTATATGAAGTTCTCTCTCCACATTAGCATTTCACATCATGCAA ATTTT
CDS sequence (LotjaGi4g1v0458800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGGCCAATGGAGGAAGATACGACTAAGAATGAAGAAGAGGAATTCAACACTGGACCACTTTCTGTTCTGATGAT GAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTAGAAATAACAAGAAGCTTCTGGGTCGTGTCAGGGCTTTTGATA GGCACTGCAACATGGTTCTTGAAAATGTTAGGGAAATGTGGACTGAGGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCC CAACCTGTCAACAAGGACAGGTTTATAAGTAAAATGTTCCTTAGAGGGGATTCTGTGATAATTGTTCTCAGGAACCCCAA GTGA
Protein sequence (LotjaGi4g1v0458800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA QPVNKDRFISKMFLRGDSVIIVLRNPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 107 | 103 | 7.6E-72 | – | |
| PANTHER | 5 | 107 | 103 | 7.6E-72 | ||
| Gene3D | 15 | 107 | 93 | 4.0E-40 | – | |
| CDD | 17 | 106 | 90 | 7.0685E-62 | ||
| SUPERFAMILY | 20 | 105 | 86 | 9.82E-26 | ||
| SMART | 25 | 104 | 80 | 5.1E-20 | ||
| Pfam | 28 | 102 | 75 | 6.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Small nuclear ribonucleoprotein complex | A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs. |
Expression pattern of LotjaGi4g1v0458800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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