Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0037500 |
| Transcript ID | LotjaGi5g1v0037500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|A0A0B2RV99|A0A0B2RV99_GLYSO Squalene monooxygenase; Found in the gene: LotjaGi5g1v0037500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6204062..6209194) extracted from Lotus japonicus Gifu genome v1.2.
GTAATTAGGCTTATTTTGTCTCTATCTTTCAGATACAGCTCCCGTGACCGTCGTAAAACCCGACCCTCGCATCTCGCACG TCCTTATAAAATGTCCTGCATTCGAAGGCGCTCGAGATTCCGTTACTCACACCAACCGAAAACCGTTCAAAACTCTCTGC CAGCGTGGCAGAGAGAGAGAGAAACTAGAGCGAGAGAGCCACCACCTTCTCCTCCGTCGCCGTCGCCGCCTCTTCTTTCC GGCGAGATTCTTCCTATTCGCATTTCACGATGGTGGATCCTTGCATGCTCGGTTGGATCCTCTTCTCCGCTCTGAGCCTC TTCGCGCTGTACAGCGTGGTCTTCGCCGGGAACAGCCGTGGCTCCTCGCAGGGGAAGGCGGCTCCGCGTTCGGAGAACGT GACGACCGCCGCTGGAGAATGCGGATCGGAGAAACTTGACGGAGATGCCGATGTCATCATTGTTGGAGCTGGTGTTGCTG GCTCCGCCCTGGCTCACACTCTCGGCAAGGTAATTTAACCGTCTGTTTCGTTGTTGATGCGTGCGTTCCTCTTGCTTGTG ATTCTCAATGATGAATGAATATGGCTTTGTCGACGAGAATACTAGCTATCATTTGAGAAATTTGCTATTGCTTTTCTTCA CGCGTTTAAATTTTTTGGAAATTTTGAATCTCTATTGAGAAGAGTTGTTTCATCAATGAAAATATGGCATGTTCTGTTTC TGAATTATATCTACCTGTGTTGAATAAAAATGGCTTCATTACAATAAGTCCATTTATTTGAACTTGACAGTTTTTGAGCT GGATTTAATGTATCTGATATAGAATGACCAAGATGTTTATTACTTTTTATTAAGAAAAATTGAAGAGAATATATTGAAGG ACAAGAAATCAATAATTGAAGTGCGTGTTTGGAAATCCTTTAAATCTAAAATTAATTCTGGGGGAGAAACTTCTGTGAGT GACTTATGGGGGTGTCAGAACTGATTCTGAAAAAAAGAAGCTGATCTGAACATGCTAGAAGTGTGAAATCTTATTTGTTT GATATCAAGATGCAGAGCATTAGTTAGGGGCGGTGAACTTGTTTCTGCAATTGGAGATCTCATGGGATTGTGATTTTTGT CATTTCTTTATTGCTTGTTGGATAGCAGACCTCTGTTTAATGAATTGACTATATACACTTGACGATTCTGTGAACATGCT TTACACATCTGGTTTAGGTGTCATACACTTTTCAGTTATACTATATGCTATTAGGACCACATAAGAGAATCAACCTTAAA TCTGGGTTATGCCGCATACCTTTCCATGGTGGATCATCTATATTCGCAGTAGTATGTTATTGTGTGTTTTGTGTTGTTGA TCAGTTGGATTCAGGACATACATATTCTTCAGGGGGGGGTTATAACTCTTATGAATTGAATTAAGGTAGTATTGTTTTCC AGAACAGATAGGTTGACTGTATAAATTTCATGTATTATAGGATGGACGTCGAGTGCATGTTATCGAAAGAGATCTGAGCG AGCCTGACCGAATTGTTGGGGAGTTGCTACAACCTGGGGGCTATCTCAAATTAATAGAACTGGGACTTGAAGGTAGTGTA GATCTTAACTATGTGCTTATTGTTTATTGTACTTCAAGACTCTTTGCTGATCATAAGACCTGGATCTGTCTTGTGTCTAA CTGCAGATTGTGTGGAGCAAATTGATGCTCAACGAGTGTTTGGTTATGCTCTTTTCAATGATGGGAAGCATACTCGTCTC TCTTATCCCTTGGAGAAGTTTCACTCAGATGTTTCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGGATGCGAGA GAAGGCTGCATCCCTTCCCAAGTATGATTTCTTCCTTTGTGAATAGTTAATATATGCTTGTCTATCTTTCCTTTCATAGA TCTTGTTTGCCATATATAAAGATTGACTTGTTACAGTGCTGCAAGGATTACTTTCTGTTGTAAATTCAAAATTTGACCTT GGTTTCTACATTTCAGATAGATTCCATTTGGCTTGATTTGGTTAGATACTTTAATCACGTTACATAAATCAAAATTGTTC ATCGAAAGTTGTTATGCTATTAGCTTCTGTCTCCTAGTATTTGATTTTCATCATCCTATGGACAACCAATTGATATAAAT TCGAATACAATTAGAAATGATATTTGAGAATTTTGAATGTAATTTTTCGTTCCTCGATTGTGCTAAAGGTATTTTCTCAT TTTACATGGTGTATTTCCTTTGTAAATCTTCTGTAGCGTACAATTGGAGCAAGGAACGGTCACTTCCTTACTTGAAGAGA AGGGAACAATAAAAGGTGTGCAGTACAAGAACAAAGATGGTCAGGAATTGACTGCATATGCTCCCCTTACCATTGTTTGT GATGGCTGTTTCTCAAACCTGCGTCGTTCTCTGTGTAACCCTAAGGTGAGAGTTCCTTTCAGTTTGATTCTCCAAAGGAG TTTCAAGGGTCAAATCGGTCAACTTCTTTCTATGCAATTACAGACAATACTAAACATTTTGCATTAGAGTTGTTTTTTGG GTTTACAAAACAAGCCTGTTTAGAGTTTTTTTTTTTTTTACTACTGAAGGTTCTTTGTCATGCTTGTAAGAAAGAGCAAT TTGTGGAATTCTGGGTTATTAATATGCCATTATGCTTTATTTGCAGGTTGATATTCCATCTTGTTTTGTTGGCTTAGTTT TAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTCTTCTATCCTATA AGTAGCACAGAGATTCGCTGTCTGGTTGATGTACCAGGTCAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGCAAAGTA TTTAAAGACAGTGGTGGCTCCACAGGTACCCATTTCTTATAAATTGTTTTTTAACCCTGGCATGTGGTAATCCTTTGTTC ACCTCCATTGTTAAATGATGATGAAGTGCCAAATTATTGCAGATTCCTCCTCAGCTTTATGATTCCTTCATAGCTGCGGT GGACAAAGGAAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGG GAGATGCATTCAACATGCGGCATCCACTAACAGGGGGCGGAATGACTGTTGCATTGTCTGATATTGTGGTACTGAGAAAT CTTCTCAGGCCTTTGCGTGACATGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGCAAGGT AATGTTGTCTTCCTTTTTTTTTTCGCCCCTCTTACCTATTTTTTCTATTTCTTTCCCTTTGCGTCTTCACCCAACAACTT AAGTTTTTGGATAGTTGGTTGATGACAAGCTTAAAAACTAATGCTGGTCCTCAACTTTCAATTTGCAGCCTGTCGCATCA ACCATAAACACACTGGCAGGAGCTCTTTACAAGGTTTTCTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGC TTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCGCAAGGACCAGTCTCTTTACTTTCAGGATTAAACCCTCGTCCGT TGAGCTTGGTTCTCCATTTCTTTGCTGTTGCTGTATTTGGTGTCGGCCGTTTACTATTACCATTTCCTTCACCTAAGCGG ATATGGATTGGAGCCCGGTTACTCACTGTATGTATTTCTTATAATCAAATTGTTTTTAATTCAGTATTTCAAGCCAGAAC GAATATCAGTGAGATTAACTCTGCAAAACCAACTTTATCTTTTGTCAGGGTGCTTCTGGAATAATCTTGCCCATAATAAA GGCTGAAGGGATTCGTCAGATGTTTTTTCCTGCCACTGTTCCAGCTTATTACAGAACCCCCCCTGTTGCAGAACAGTGAG TATCATCGAATACATTTTGAAATGTTAATGTGCTCTCAAGATGTGCTAGCTTTATTCTCAATTCTGTGGAATTGGAGATA AGGTTGGTGTTCATAGATCTGCAAACATTTTGGCCTTTTTTTAGTGTGTATTCTTTGTAGTCTCTGTAACAGGCACAATA TTATAAGTGAATGTATGATTTCTTTTTTTACTCCTTTTTGCTATATAAGAAATTAAATTCGTTATCTCAAACCAAATTAT CATCAGCACCAGCTACTTAAAGTCTTAAACTATGCATAGCATTGTTGCATAAAAAAAATTATGCATTTAAACGAATCTGT TTGATTTAATAGTCATTTTAAAATTAGATATGGGCAAAATGCCAAACGATATATTCTTTTTTAACATAACCACTTACAAA CAATATGGGCTTTGATTACTTATATATACTATCGTTCTCTGCAAAGTGCATGTCCAAAACATGACAACTGTATGTCTCAT TATTTTTGTCACTGGCCACGTAATAAGTTGTGATTTTGTTTCCATGATAAGGTTTACAAAATGTCCATATGCCAAACAAC ACATATTACCATGTGCTTGTTGAGAACATGGTTTTTGTGCCTTGGAGAGTAACTCAAAGGTCAAAATTGCTAATTATACA AAAATTAAACTTCTCTGGAACTTGAAATGTAGGATACGTATCATGTAAAATCTTGGTAAGTTCAGAGAAGTGTGCCACTC ATACAGCTAGACAATATCTTCCACTAGCTGAAGCAGACTCATATGCTTGAATATGGGCTTCTGCAACATCTTTCACATTG ATCCATCCAAAAAGTAAAATTTGGAAATCTTTGCAAACCTGCACCGAGCAAGTGAAAGAGTTCTTCTATTAAGTAAATTG GAATCTATTTGGCAGACAGAAATCATGTTCTCAAGAATCTCAACAAGCACTTGAATGGTTAAAGTCTTGCATGTACCACA GACCAATCCAAGGATGTAGTTGTGTCCATCTTATCTTTTATAGCACAATAATTTTTTTTTTTATGATGATTTCAATCAAT GGTTTTATTTAGATTGTTTGAGGTTTCTATACTATAATGTTTATCATTGTGACTACTATGTACTTTGAATTCCCTCTCTT TGTCTCTTTGATTCTTGTGCTACAAGTTAAGAAACAAAACCTTGCAATATCATTCAATTTGGCTGTTAAGAACAGTACTA AACAAAGCACAAG
CDS sequence (LotjaGi5g1v0037500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGATCCTTGCATGCTCGGTTGGATCCTCTTCTCCGCTCTGAGCCTCTTCGCGCTGTACAGCGTGGTCTTCGCCGG GAACAGCCGTGGCTCCTCGCAGGGGAAGGCGGCTCCGCGTTCGGAGAACGTGACGACCGCCGCTGGAGAATGCGGATCGG AGAAACTTGACGGAGATGCCGATGTCATCATTGTTGGAGCTGGTGTTGCTGGCTCCGCCCTGGCTCACACTCTCGGCAAG GATGGACGTCGAGTGCATGTTATCGAAAGAGATCTGAGCGAGCCTGACCGAATTGTTGGGGAGTTGCTACAACCTGGGGG CTATCTCAAATTAATAGAACTGGGACTTGAAGATTGTGTGGAGCAAATTGATGCTCAACGAGTGTTTGGTTATGCTCTTT TCAATGATGGGAAGCATACTCGTCTCTCTTATCCCTTGGAGAAGTTTCACTCAGATGTTTCTGGCAGAAGCTTTCACAAT GGCCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCATCCCTTCCCAACGTACAATTGGAGCAAGGAACGGTCACTTCCTT ACTTGAAGAGAAGGGAACAATAAAAGGTGTGCAGTACAAGAACAAAGATGGTCAGGAATTGACTGCATATGCTCCCCTTA CCATTGTTTGTGATGGCTGTTTCTCAAACCTGCGTCGTTCTCTGTGTAACCCTAAGGTTGATATTCCATCTTGTTTTGTT GGCTTAGTTTTAGAGAACTGTGAACTTCCATGTGCAAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTCTT CTATCCTATAAGTAGCACAGAGATTCGCTGTCTGGTTGATGTACCAGGTCAGAAGGTTCCTTCTATTTCAAACGGTGAAA TGGCAAAGTATTTAAAGACAGTGGTGGCTCCACAGATTCCTCCTCAGCTTTATGATTCCTTCATAGCTGCGGTGGACAAA GGAAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGATCCTCATCCTACACCTGGAGCCCTTCTGATGGGAGATGC ATTCAACATGCGGCATCCACTAACAGGGGGCGGAATGACTGTTGCATTGTCTGATATTGTGGTACTGAGAAATCTTCTCA GGCCTTTGCGTGACATGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGCAAGCCTGTCGCA TCAACCATAAACACACTGGCAGGAGCTCTTTACAAGGTTTTCTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCA AGCTTGCTTTGATTATCTGAGCCTTGGAGGCCTATTCTCGCAAGGACCAGTCTCTTTACTTTCAGGATTAAACCCTCGTC CGTTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCTGTATTTGGTGTCGGCCGTTTACTATTACCATTTCCTTCACCTAAG CGGATATGGATTGGAGCCCGGTTACTCACTGGTGCTTCTGGAATAATCTTGCCCATAATAAAGGCTGAAGGGATTCGTCA GATGTTTTTTCCTGCCACTGTTCCAGCTTATTACAGAACCCCCCCTGTTGCAGAACAGTGA
Protein sequence (LotjaGi5g1v0037500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDPCMLGWILFSALSLFALYSVVFAGNSRGSSQGKAAPRSENVTTAAGECGSEKLDGDADVIIVGAGVAGSALAHTLGK DGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFNDGKHTRLSYPLEKFHSDVSGRSFHN GRFIQRMREKAASLPNVQLEQGTVTSLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFV GLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQIPPQLYDSFIAAVDK GNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDMNDAPTLCKYLESFYTLRKPVA STINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSQGPVSLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPK RIWIGARLLTGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVAEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 523 | 523 | 0.0 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 523 | 523 | 0.0 | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 27 | 456 | 430 | - | – | |
| SUPERFAMILY | 60 | 435 | 376 | 3.46E-48 | ||
| Gene3D | 61 | 399 | 339 | 5.4E-44 | ||
| PRINTS | 61 | 83 | 23 | 8.1E-10 | – | |
| Pfam | 64 | 90 | 27 | 3.0E-5 | – | |
| Gene3D | 102 | 326 | 225 | 5.4E-44 | – | |
| PRINTS | 210 | 225 | 16 | 8.1E-10 | – | |
| Pfam | 211 | 483 | 273 | 5.6E-120 | ||
| PRINTS | 338 | 353 | 16 | 8.1E-10 | – | |
| PRINTS | 353 | 369 | 17 | 8.1E-10 | – | |
| Phobius | 457 | 476 | 20 | - | – | |
| Phobius | 477 | 481 | 5 | - | – | |
| Phobius | 482 | 500 | 19 | - | – | |
| Phobius | 501 | 526 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0037500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…