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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039100 |
| Transcript ID | LotjaGi5g1v0039100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1-like 1; TAIR: AT4G08150.1 homeobox knotted-like protein; Swiss-Prot: sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2; TrEMBL-Plants: tr|I1M8Y1|I1M8Y1_SOYBN KNOX-like DNA-binding protein; Found in the gene: LotjaGi5g1v0039100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6579676..6585859) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAAAGTCTTGTCAACCACCCCAACAAGGAGGCATTGCCGGTTTCGACTGCGCCACCTCTCTCTCTCTCTTCTAGTT TCATCTTCATCCGTACATCACATCATGTGAGACTAGTATTATCCCTGGTTTCTTTCTACCTTCTCATATCCTCTCTATCA ATGACCCAAAATCATCGAGTGCAATTATCTTTAATCACTTGACCTATAGCACCTTAACTTTTGCTACCAAATCATACTTT TGCTGGTTGATTAATCTGTGGTCCTCAACATTCATTACCATCAATATCTCAACACACCTATTTTCTCTTTAGGGTTTAAG TTGTTGTTCACCCTTCCAAGAATTTCACAAAGAGAAATAACAAATTAGGGTTTTTCTTGCTTCTTCACTTGTGGTTCAAG AGAGAGAAGAAAGCTTTTTGCCTTTTGCTTTATAGTTTGAATTAATGGAGGAATACAATAATAATCATAATCACAACCAC CTGAGTGAAAACTCAGGTCCAAGTCCAAGTTCAAGGCCAAATTTCTTGTACCATCATCAGTTTCCTATCAATAATTTTCA TCTTCAATCAGGTGGATCAGATCATCACAACTTTCTTCCCGATCAATCACCACCGCAACAACCACCACTCCCTGCGGCGG TGAAAACTGAAGCCACCACCTCGCAGCTTCTTCACACTCCGATTTTCCACTACCCTTTGATGAGAGGAAATCTTATGCAT CATTCTCAGCAAGGAGGAAGTGGGAGCCCGAGCTCTAGCGAAGTTGAAGCCATAAAAGCCAAAATCCTTGCTCATCCTCA ATACTCTAGTCTTTTAGAAGCTTACATGGATTGCCAAAAGGTCAGCACTTAATTAATTATTCATTTCTCATCATAACAAA TTCAAACAACATATGCCCCATTTTTTAATATTTTATTTATATATTAAACTCTTAATTATTATCATCCTCACTCTAGCATG TTTGGATCAAACTATTTTTCCCATAATGAATTTTGTGGCTATACTTCTTTTTCTTAAATCAATTTTACCGCTCAGCAATT TTGGATGTATACTTATTTTTCTTCAGAATCAATTTAGTTGCTCATAAGTTATTTGCAGAAACTTACCCCGAATTAATTTT GGCTTTACAATCAATTTTGAAGGATTTCAAACATGCACTCAATCTTCCTCTCTCTTTACTTTTGTTGTAGATAGGTGCTC CACCGGAAGTGGTGGCGCGTCTGGTGGCGGCGAGGCAAGAGTTTGAGGCACGGCGGAGATCTTCAGTTAGCTCAAGGGAA AATTCCAAAGATCCAGAACTTGATCAATTCATGGTATATAGAGGAGTATTTATTTATTATTTATAGTAATTCTTTTTTGC TTATTTCTATGGAAGTGAGGTAGTGTTGGAACTTGAAATGGTGTGTGTTGAACAGGAAGCATACTATGACATGCTTGTGA AGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGCGGAGGATTGAAACTCAGCTTAACATGCTT TGCAATGGACCCGTGAGGATCTTCAATGGTACTTCATCTTTCTCTTTATATGCATCAAGAGTACCCTTATTCTCTTCTCA CTTTTATTCCTCTCCAATCCATTCCCTTTCTAACCAATACAAATCTCCATCTTTTTTTAGCATAATTAGTTTTGGTTTTG TTTTTTTTTCACTGAAAACGGAGTAATTAATTATGGATTATGCAATTTAATCAGCACAAAATTTCGTACTGGGTTCTGCA ATATTTCTTGAAATTCGAAAACTTGAGTATTTCTGTACCCTCCTGAAGCCTGAAAACTTTGACCAAAAATTTCATATGCC TTCAAATCGTGTGATGGGAGAGGAGGGGACCCAATGAATGATATTTCTTTCATCAAGCACAGAACCCTAATTACTAGCTT CCTTTTATGATTTTTTAATAGGGAAGAATGTGTATTAACTATTAACTCTTTTCAGATATTTTTCTACATTACTTTTATAA AATATTTTAAAAAGTATTGTATTGTCTATTCTTCACGATTCCAGATGCTTCTTTATGTATTTGTTTAATATTTTAATTTT TTTTTTTTGCTAAAACCCAAATACACACGTTGGCGTCTTTACTAGCCTGGCTAATCCGTTTTCCCAAGCTTGCTCTGAGG TCTGACAAAATTATTCTTCTAGGGTTTCTGAGTTAATCCGTTTTTATATTTTGCTAAACTAACTAAAAGTTATCATTATC ATGCTTATCTAAAAAAAAAACTAAAACTTATCATTACCATGTACTTCTCGTATTGGTTGAACAGTGTAGCATGAGATAAT CAGTTAATCACAGACATCCTCTCATCATTGTATTGGTCTTGTTTTTTTTACTTTTTCCTTCTCTTTCTTGGGTTTTTTCT CCTTCTGCGTCTGAGTCACACACATCGTCTCGTTTTTTTTTATCTATATATATCTTATTTAGCAAGAAACACATTGGATG TTGTACTATTTTTGATGTGTAATCCCATTTTCTGTGTATGATTTTGTGGGTTGTGTGTTTGTTAGGATACACTTTTAAGT TTTAAGACATAGCTCACATTTTAATGAAAAAAAAACTTAATTTTTTCAAAGAAATAAAATAGTTTGATTATATATAAAGT AACTTTCACATTTTCTCTTCATTTCTCTACGTATCACATCACATCGAGTCCACTTATAATTGCAAACACCTTTGGACACC CGACACATGTGCAAAGATCAATGTCGGAGAGATTGTTTGTTGACATCATATATATATAACTGCTTTGATTGCATCAAATG AGGGGTGGGGTGTCTTTGGGTGTTTGTTATTATTTAGGTGTTCAAGTATCATTTTTGCATCACATCATATATCATATATT CATATAAATTATTTTTCTCTCTTCTCTTATCTTAATTTCTCTTGTTTCAATACACACATCGGGTGAATTTTACTTTTTTT AACTTTAATTTATTCACACCCAAAGAGTCTCTCCTATTCCTATATCTTACTAGGTGAAACTAAGGTGCGTAAAAATGATT TTTTTATACTTGATTAGTTTTATATATAAAACATGCATGCCTAGCAACCGATATGAAAATGATTCGTAGACATCTGCATA ATGCAGATAGTGCACACAAATAGAGAGATAGAGAAAGAAAATGGAGAAATAATGAATGTTATATATGATGAATGTAAGAA AAGAGAGAAATAAAATGCAAAATGTGGTTTCCGGTATATACACTATCTATATGTCTAAATTTCACCGATGTAATGTTGCC TTTATCTCAATTCACCTTATTTATCTCTAACCTTTTATGTTTCCAACATATCATATTTTTGATAATGAATCATTCACACT TCTCTTTACCAAGTGTGAGATAAGAAGAGAAAAAAGAGAAACATATGAGTGAAATGATATATGATGTGATAAGAATTGCA AAGAGATAGAAAAAAAAAGTTGAGCGGAATTGAAATAAAAGAGAAAAAGAAGGGTGGAATCATTATTCCCCATTTTTTCT CTTGTATTTTTATCTCAATTGATTTTGGGTCTATACATTCCATGGTATGCCAACAACTATTATTTCCCATGTCTAATGTG TCAAGAGTTTTGGTAGCCAATCTTACAATTATGTGTGATATTTAAGTAAATAGCATTTTTAAGATATAATTTGCTCATTA CAATTTTTTTTTTAGATAAACCAAATTGAATAAATAAGAGTACGAATGGGTACTCAAACCATAAAATGTACATAGAACTC AGTTACGGTCAATAACAGATTAACCACAAGCTGAGGAACAGAACTGTGTAAAAGGAACAAAAAAATACACCTGTGAATTC TATTCAGTGAGCTTACAGTTGAGAAGCCTCACATTAACTAGAGTAACTCTTGAGCTAACTTTTGAGTTGAGTTAGATTTT GAAAATTCTAATGACCTTATTAAAGTTTTCGATGGTTGATGAGTATTTCAGTGAGTCTACTCTCTATGTCCTTTCTTATC TACGTCATCATTCGATAACTGTGTATTTACATTATGAAACTACTTTCTCCATTTGAAACAATTGTTATTTTAGCTTTTCA CCAATTTTTCAAAACTCTTGTTGTTTTAGAAATTCAAGACTATTAATCACATTTTCTTCTATATATACCCTGATTGAATG TTATATTTGTCACCTACAACATCTAATCTTCACCTATCTCAAGTCTCATCAATTACTTAACCAATTTTCATTTAGGGGTT TCTGTGCTACTTTCTTTAGTTGTACCGATGTCAGTTACTATCTCAGGTATTTAGTTTCTAGCACCCCTTGTGCTAGCCCT TCAATATAATTCAACATTAAATTAGAGTGTTTTAATCTAATTATATATCAATTTATGCAAGTCTTAAATTATGTGTTACC TTAAACAGTAACAGTTTTTGGTTCCACGTGTAACCAAAAAACAACAACGTGTTTCAAAAAAAAGAGGGAGTAGATTTTTC TTTATGAGTAGTATATACTTTGTATTTGTTGTAACAAAATGTACATATATTATTACTCAGTTAGTTATGTGCCATATTTA AACAATGTTGCATGCCATTGTTGAGCAGATGATAAATGTGAAGGCGTAGGTTCATCAGAAGAGGATCAAGACAACAGTGG TGGAGAAACAGAACTGCCCGAGATTGATCCCCGGGCAGAAGACCGTGAACTCAAAACTCACTTGCTCAAGAAATACAGTG GTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCCAAAGATGCTAGACAAAAGCTG CTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGTATGTAAATTTACAATCTTCATCTTTGAACACTCAAA CAGTAATAAATTCACAATTTTTCCAATTTGGATTTGTTGTGGTAGAATTTTCCAAAATTCACCATAGTCATTGCTCCATT TTTTTTGATCAGCAAACTGTTTGATTAAGATCAGACGACTTAGATTTAAAGAGAATGACTATACATGTTTTTTTGTATAG GCAAATATAATAGTGTTTGTAAATTAATAAGTGGACCAATAATAATAGTTATAAATAATCAAGTAAAATCTAGGTGTAAT TCACGACTCATTTATGTTAAAACTTAAAACTATTGATCCAGATATTTTATTTTTGGGGGTAAGTTCACTCATGTTTTTTG CCTTCAAAATTGATGTTCTTGTTTGATAATTACTAGGAATCAGAGAAGGTGGCATTAGCTGAATCAACTGGTTTGGATCA GAAGCAGATAAACAACTGGTTCATTAATCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGG ATGGCCTCCATCCTCAAAATGCAACACTTTATATGGATGGTCATTACATGGCGGCTGATGGTCACTACCGCCTTGGGCCA TGACCATCTCTTATGTATAAGTGTATCAGGTGAGAGAAATGTTTAATTTAAGGCTCCAACCTCTCATAATAAAAAGTTCT CTCACTTGATACGAGCTTCTTATCAAGAAATTAGTAGAATCTCTATGGGTTGGGTTACCTCTAGTACCCCCTTTCTTTTC TCTATTAATAATATAATTTGACATTCCAAAAAAAAAAAAAGGATAAAAAGCCAACGCTTTAAGCTTGTAATATATCAAGC ATAACGTGAACATTAGTTTTGCTTGTGTAGTGTGAGCACTAGAGTATGTGATCGATATCTTTATTAATTACTGTTGCTTA TATTTTCAGTACAAGTAGTACCCAGGAACAGATAATCTATTGAGATGTTTGTTGGAACTTTGATTATTATTACTTCAACC TTCTTAATTGAAGTGTATAACTTTGTGGTATGATTGGTGTACGCAAAAGTTGTTTGTGATTTGGAGCTTCTGTACCATCA AGAGTTTGTAAGGAGTTACTGGGTATCAAGCTTTTAATGGACTGTATATGATGACAAAATCATTCTTCATGAAACTTGTG AATTTGATGCATGGTTGAAAAGTTCAATGTTATGCTTCCTTGTTGTTGGCAGTGACGGATCCAGAAATTTATTGTTGTGA GGGCAATATATACATATAAATTTGTATAAAAAAATTTAATTATATTACTAGAAGTGAGTGCATTTTTTACCAAATAAGAG AAGTAAATACATTTTTTACTAAAG
CDS sequence (LotjaGi5g1v0039100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAATACAATAATAATCATAATCACAACCACCTGAGTGAAAACTCAGGTCCAAGTCCAAGTTCAAGGCCAAATTT CTTGTACCATCATCAGTTTCCTATCAATAATTTTCATCTTCAATCAGGTGGATCAGATCATCACAACTTTCTTCCCGATC AATCACCACCGCAACAACCACCACTCCCTGCGGCGGTGAAAACTGAAGCCACCACCTCGCAGCTTCTTCACACTCCGATT TTCCACTACCCTTTGATGAGAGGAAATCTTATGCATCATTCTCAGCAAGGAGGAAGTGGGAGCCCGAGCTCTAGCGAAGT TGAAGCCATAAAAGCCAAAATCCTTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCTTACATGGATTGCCAAAAGATAG GTGCTCCACCGGAAGTGGTGGCGCGTCTGGTGGCGGCGAGGCAAGAGTTTGAGGCACGGCGGAGATCTTCAGTTAGCTCA AGGGAAAATTCCAAAGATCCAGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATT AACAAGGCCTATACAAGAGGCTATGGATTTCATGCGGAGGATTGAAACTCAGCTTAACATGCTTTGCAATGGACCCGTGA GGATCTTCAATGATGATAAATGTGAAGGCGTAGGTTCATCAGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAACTG CCCGAGATTGATCCCCGGGCAGAAGACCGTGAACTCAAAACTCACTTGCTCAAGAAATACAGTGGTTACTTGAGTAGCCT TAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCCAAAGATGCTAGACAAAAGCTGCTTAACTGGTGGGAAT TACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTAGCTGAATCAACTGGTTTGGATCAGAAGCAGATA AACAACTGGTTCATTAATCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGCCTCCA TCCTCAAAATGCAACACTTTATATGGATGGTCATTACATGGCGGCTGATGGTCACTACCGCCTTGGGCCATGA
Protein sequence (LotjaGi5g1v0039100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEYNNNHNHNHLSENSGPSPSSRPNFLYHHQFPINNFHLQSGGSDHHNFLPDQSPPQQPPLPAAVKTEATTSQLLHTPI FHYPLMRGNLMHHSQQGGSGSPSSSEVEAIKAKILAHPQYSSLLEAYMDCQKIGAPPEVVARLVAARQEFEARRRSSVSS RENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFNDDKCEGVGSSEEDQDNSGGETEL PEIDPRAEDRELKTHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQI NNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMAADGHYRLGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 70 | 70 | - | – | |
| MobiDBLite | 10 | 53 | 44 | - | – | |
| PANTHER | 65 | 370 | 306 | 5.2E-143 | – | |
| PANTHER | 65 | 370 | 306 | 5.2E-143 | – | |
| SMART | 108 | 152 | 45 | 5.1E-21 | ||
| Pfam | 109 | 151 | 43 | 3.3E-22 | ||
| SMART | 159 | 210 | 52 | 8.9E-30 | ||
| Pfam | 164 | 209 | 46 | 6.2E-25 | ||
| MobiDBLite | 220 | 248 | 29 | - | – | |
| Pfam | 251 | 272 | 22 | 7.5E-9 | ||
| ProSiteProfiles | 251 | 271 | 21 | 10.999 | ||
| SMART | 251 | 272 | 22 | 1.4E-6 | ||
| Gene3D | 268 | 341 | 74 | 2.3E-21 | – | |
| ProSiteProfiles | 271 | 334 | 64 | 12.989 | ||
| SUPERFAMILY | 272 | 346 | 75 | 1.5E-19 | ||
| SMART | 273 | 338 | 66 | 2.1E-13 | ||
| CDD | 283 | 335 | 53 | 1.3348E-12 | ||
| Pfam | 291 | 330 | 40 | 1.1E-16 | ||
| ProSitePatterns | 309 | 332 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0039100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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