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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0081500 |
| Transcript ID | LotjaGi5g1v0081500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A072VC98|A0A072VC98_MEDTR ATPase, AAA-type, CDC48 protein; Found in the gene: LotjaGi5g1v0081500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13327667..13331252) extracted from Lotus japonicus Gifu genome v1.2.
ACTCCGTCGTCGCTCTTCACCCTGAAACCATGGAGAAGCTTCAACTCTTCCGCGGTGACACAATTCTCATCAAGGTAAAT TCTCATAAACCCCAGTTTTGTTTTTCTGTTTCAGATTAGGGGAATTGCTCTTACTTGATGTTAGGGTTTGATTTGATTGG TAAACTATGTGATTTTATTGTAAAGGTGAGTTTTTTAATTTTTTTGTTGGTTGATTTTAGGGGAAGAAGAGGAAAGACAC AATTTGTATTGCACTTGCTGATGATACGTGTGAGGAGCCGAAGATAAGGATGAACAAGGTTGTGAGGAACAATCTTAGGG TTAGGCTTGGAGATGTTGTTTCTGTTCATCAGTGTGCTGATGTTAAATATGGGAAGCGAGTTCACATTCTTCCTGTGGAT GATACCATTGAAGGAGTCACTGGGAATCTCTTTGATGCATACTTGAAACGTGAGTTTCTTGCTGTTTCAGTGTTTTTTGT TGGTAGTTTGATTCATTATCTGATGTTGGTGTCTTTTGATTGAGAATAGGATTAATATAGTTAGTCAAACAATTCTTATT TCTTAGGTGGACACAGTTTTTATAGATGCATGTAATCATCAGGGTTTATGAAAATAATAATGAAAAAGATATCAGGGCTA ATGTCAAATTTATAATATTATCTTGTTTTTGATTGGTTATGTATTTTTTATTTATTTTAACATATTTTGTTAATAAGATG GTCTGATAAATTGGCAAGAAGAATACTGTGTTTTCTACACATTGAAAATTAGTGACCCTTTTGAATAACTATTGGCTTCC CTAGGCTTAACTACAACATGGATGAAAAACTAATCTTTTCATTGAAGTCAAATGGCAGTAGCACATATTTTAAGTCCTGT TCTGTCACTTTTTATTGGGTTCTGTTTGGCTTACTAACACAGCTGCTGCATTCTATTTCATTATGAATACTGAGTCTAGT TTTTCTTTTGCAGCTTATTTCCTGGAGGCATATCGTCCTCTAAGGAAGGGAGATTTCTTCCTTGTGAGAGGGGGGATGAG AAGTGTGGAATTCAAGGTTATTGAAACCGACCCTGCTGAGTATTGTGTTGTTGCTCCAGACACTGAGATCTTTTGTGAAG GAGAACCTATTAAAAGAGAAGATGAGCAACGATTGGATGAGGTTGGTTATGATGATGTTGGTGGGGTTAGAAAGCAGATG GCACAGATTAGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCGAAAGG AATTCTGCTGTATGGACCCCCTGGGTCTGGTAAAACTTTAATTGCCCGAGCAGTTGCAAACGAAACCGGTGCCTTCTTTT TCTGCATCAATGGCCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTGCGTAAGGCATTTGAGGAAGCT GAGAAAAATGCTCCCTCTATCATCTTCATTGATGAGATAGATTCTATTGCTCCAAAAAGGGAGAAGACTCATGGTGAAGT TGAGAGACGTATTGTCTCTCAGCTCTTGACCCTCATGGATGGGCTTAAGTCCCGTGCCCATGTAATTGTTATGGGAGCCA CTAACCGTCCCAATAGCATTGACCCTGCTCTTCGAAGGTTTGGAAGGTTTGACAGGGAGATAGACATTGGTGTGCCCGAT GAGATTGGGCGTCTTGAGGTTCTTCGTATCCATACTAAAAATATGAAGCTTGCCGAAGATGTAAGATTGAATCCCCCTTG AATTATGGATTAATTTGAACTTTTTGATATCTGACAAATTTGTCCATTTTGTGATTTGTAGGTTGATTTAGAAAGGATTT CTAAGGACACCCATGGATATGTTGGTGCTGATCTAGCGGCTCTGTGTACTGAAGCTGCGCTTCAGTGCATCAGAGAGAAA ATGGACGTGATTGACTTGGATGATGAGTCCATTGATGCTGAGATACTGAACTCAATGGCAGTGTCTAATGAGCATTTCCA TACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTAGTTTTCTAGCCGTTTTTATTTCAGCTCTACATT TGCTCTCATCTTGTTTTCCCCACCTTGGTATACCTTGTGATTACTCCTTTTGAACTTTTGGTTTTCTAACTCTGTCTTTG CTAATGAACCAGGTTGTTGAAGTACCTAATGTCAGCTGGGAAGATATCGGTGGTCTTGAGAATGTTAAGAGAGAACTCCA AGAGGTAACTAGAGCTCTTCATTAAATTACATCATTCTAGTTTATTATCATCAACCTCTGGGTTTTAATAATGCTCTCTT TTGCAGACTGTCCAATATCCAGTGGAGCACCCAGAGAAATTCGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTT CTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCAAAAGCTATTGCTAACGAATGTCAGGCTAATTTCATCAGTGTCA AAGGACCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAAGCTAATGTCAGGGAAATTTTTGACAAAGCTCGTGGTTCT GCGCCATGTGTCCTATTCTTTGATGAACTTGACTCCATTGCAACTCAGGTTTGTTGTGCCATACTAAGCTATGATTTGGA CTTCAGATAAAGCTTTTGTTTTCTAAAACATTGTTTTATTCCCTTAAAAAATATATTAAATACAGCAAGTTAGTGTGCCT ATAGGCTCTGCTTAATTTTATCTTCTTATTAGGTGTATTTAAATTAAATCTTGTGTGCTTTATCTTGCAGAGAGGCAGTA GTGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTCTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCGAAGAAA ACTGTGTTTATCATTGGGGCCACTAATCGGCCAGACATCATAGACCCTGCTCTTCTACGACCGGGCCGTCTGGACCAATT GATTTATATTCCCCTTCCGGACGTGGATTCTCGGCATCAGATATTCAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAG ATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAAGGCTTCAGCGGTGCTGATATTACCGAGATTTGCCAGCGTGCATGC AAGTATGCCATAAGGGAGAACATTGAGAAGGTACAGTTTTTTGAGACCCCTTTTTCACTGTGATATATTTACTAATATAC GTTGATTACTATTAAAATTAAAATTTTCAATTGGATTCAACGTAAAGCTAATTTTCCCCCCTAACTTCTCTGGGCAGGAT ATTGAGAGAGAAAGGAGGAGAAGTGATAATCCTGAGGCTATGGAAGAGGATATTGAAGACGAAGATGTAGCTGAGATAAA AGCAGCTCACTTTGAAGAGTCAATGAAATATGCACGAAGGAGTGTAAGTGATGCTGACATTCGAAAGTACCAGGCGTTTG CCCAAACATTGCAGCAATCAAGAGGGTTTGGATCGGAGTTCAGGTTTGCAGATACCAGTGCCGGTGGGACTGCCGCTGCC GCTGCCGCTGCCACTGATCCATTTGCAAGTGCTGGTGGTGGTGATGAAGATGATCTATATAGTTAG
CDS sequence (LotjaGi5g1v0081500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAGGTTGTGAGGAACAATCTTAGGGTTAGGCTTGGAGATGTTGTTTCTGTTCATCAGTGTGCTGATGTTAAATA TGGGAAGCGAGTTCACATTCTTCCTGTGGATGATACCATTGAAGGAGTCACTGGGAATCTCTTTGATGCATACTTGAAAC CTTATTTCCTGGAGGCATATCGTCCTCTAAGGAAGGGAGATTTCTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAATTC AAGGTTATTGAAACCGACCCTGCTGAGTATTGTGTTGTTGCTCCAGACACTGAGATCTTTTGTGAAGGAGAACCTATTAA AAGAGAAGATGAGCAACGATTGGATGAGGTTGGTTATGATGATGTTGGTGGGGTTAGAAAGCAGATGGCACAGATTAGGG AACTGGTGGAACTGCCATTGAGGCATCCACAATTATTCAAGTCTATTGGTGTTAAGCCACCGAAAGGAATTCTGCTGTAT GGACCCCCTGGGTCTGGTAAAACTTTAATTGCCCGAGCAGTTGCAAACGAAACCGGTGCCTTCTTTTTCTGCATCAATGG CCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTGCGTAAGGCGTTTGACAGGGAGATAGACATTGGTG TGCCCGATGAGATTGGGCGTCTTGAGGTTCTTCGTATCCATACTAAAAATATGAAGCTTGCCGAAGATGTTGATTTAGAA AGGATTTCTAAGGACACCCATGGATATGTTGGTGCTGATCTAGCGGCTCTGTGTACTGAAGCTGCGCTTCAGTGCATCAG AGAGAAAATGGACGTGATTGACTTGGATGATGAGTCCATTGATGCTGAGATACTGAACTCAATGGCAGTGTCTAATGAGC ATTTCCATACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTACCTAATGTCAGCTGGGAA GATATCGGTGGTCTTGAGAATGTTAAGAGAGAACTCCAAGAGACTGTCCAATATCCAGTGGAGCACCCAGAGAAATTCGA GAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCAAAAGCTA TTGCTAACGAATGTCAGGCTAATTTCATCAGTGTCAAAGGACCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAAGCT AATGTCAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCGCCATGTGTCCTATTCTTTGATGAACTTGACTCCATTGCAAC TCAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTCTGAATCAACTGCTTACAGAAATGGATGGAA TGTCAGCGAAGAAAACTGTGTTTATCATTGGGGCCACTAATCGGCCAGACATCATAGACCCTGCTCTTCTACGACCGGGC CGTCTGGACCAATTGATTTATATTCCCCTTCCGGACGTGGATTCTCGGCATCAGATATTCAAAGCTTGCTTGAGAAAATC CCCCATCTCAAAAGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAAGGCTTCAGCGGTGCTGATATTACCGAGATTT GCCAGCGTGCATGCAAGTATGCCATAAGGGAGAACATTGAGAAGGAGAAGTGA
Protein sequence (LotjaGi5g1v0081500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPLRKGDFFLVRGGMRSVEF KVIETDPAEYCVVAPDTEIFCEGEPIKREDEQRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY GPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLE RISKDTHGYVGADLAALCTEAALQCIREKMDVIDLDDESIDAEILNSMAVSNEHFHTALGSSNPSALRETVVEVPNVSWE DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA NVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPG RLDQLIYIPLPDVDSRHQIFKACLRKSPISKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 0.0 | – | |
| Gene3D | 1 | 24 | 24 | 1.8E-6 | – | |
| PANTHER | 1 | 207 | 207 | 0.0 | – | |
| SUPERFAMILY | 24 | 116 | 93 | 1.08E-33 | ||
| Gene3D | 25 | 119 | 95 | 9.6E-48 | – | |
| SMART | 42 | 108 | 67 | 2.5E-14 | ||
| Pfam | 44 | 107 | 64 | 5.9E-11 | ||
| SUPERFAMILY | 116 | 305 | 190 | 2.51E-35 | ||
| Gene3D | 120 | 208 | 89 | 1.3E-32 | – | |
| CDD | 123 | 245 | 123 | 6.11154E-13 | – | |
| SMART | 153 | 318 | 166 | 1.9E-4 | ||
| Pfam | 157 | 208 | 52 | 2.4E-15 | ||
| PANTHER | 206 | 547 | 342 | 0.0 | – | |
| PANTHER | 206 | 547 | 342 | 0.0 | – | |
| Gene3D | 215 | 310 | 96 | 5.3E-33 | – | |
| Pfam | 236 | 277 | 42 | 7.6E-14 | ||
| Gene3D | 315 | 490 | 176 | 4.1E-100 | – | |
| SUPERFAMILY | 315 | 547 | 233 | 7.71E-72 | ||
| CDD | 323 | 490 | 168 | 1.88632E-31 | – | |
| SMART | 353 | 492 | 140 | 2.4E-24 | ||
| Pfam | 357 | 490 | 134 | 1.7E-46 | ||
| ProSitePatterns | 460 | 478 | 19 | - | ||
| Gene3D | 491 | 548 | 58 | 4.1E-100 | – | |
| Pfam | 512 | 547 | 36 | 1.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0081500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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