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LotjaGi5g1v0145300.2

Overview

Field Value
Gene ID LotjaGi5g1v0145300
Transcript ID LotjaGi5g1v0145300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q54XD8|IF2G_DICDI Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|G7IJ99|G7IJ99_MEDTR Eukaryotic translation initiation factor 2 EIF2-gamma-II; Found in the gene: LotjaGi5g1v0145300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:36854707..36858102) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGTCAAAATTGCATCCACTTTCGCCTGAAGTCAT ATCTCGGCAAGCTACTATTAATATTGGTAATACGTTCTGTATTTATTTCCGATTTGTTACAGCATTAGTATTTGAACTTG AACAATTTTGTGATTTAAAAAATCATGTTAGCTTCTTTCCATATTGATGGGCATTAATCCTGATGAGTAATATTGTAACC TGGCAGGCACCATAGGCCATGTGGCCCATGGAAAGTCAACCGTTGTGAAAGCAATATCAGGTGTTCAGGTATTCTTTTGT TTTAAATTTTTCATTTTTCACTAGGATAATGCTGTTTAACACTTTAACTTTGAACATATATGTAATTCCCGTTATATAGA CTCTTTGTTGTCTCATGTGTGATCTGTTTCAAATGGAAATAAAGTATCTACTCAATTGACATAAGTCATAACTCATAAGG GTTATTGCTAACCGCTTATATTTGCTCAGTATAAGTAGCTGTTACTTGGTACCTACATCAAGTTTGTCAAAATGAGTTGC CATAGAATATGAAGTGGCAATCATCTCCTGGTGGTTACATAGATATTTGACAATATTTTGATCAATTGAATATGCTACCC TCTTTATTTTCCATCTTCAATCTTTAAGAAGGATTATGCAAAACCTTGCAAGATTGTATTCTTGATATATTTCCCCTCAA TGGTTTCCTGTGATTGTTGTGCAGACCGTGCGTTTTAAAAGTGAGTTGGAACGCAACATTACAATAAAGCTTGGCTATGC AAATGCAAAAATATATAAATGTGAAGATGCACGGTGTCCGAGGCCTATGAGCTACAAGTGGGGTTATTGTTTTGCACCCT CTTTCTCTATTATATTATCAGTTTATTTCAACTCTTGTGATGTGATCTAACATTTTGCACAGGGCTTATGGAAGTGGGAA GGAAGATGCTCCTATGTGTGAAGTACCAGGGTTTGAAAACTGCAGGATGAAATTGTTGAGACATGTTTCTTTTGTCGATT GCCCGGTAAATTCCAGTAGTCATTTGCTAGCTAGGCTGTTTTATTCATGCTTTCATTAGATTTTAGATATAATGTAGGAG TATTTACGTTTTGGTTTTACGTTTCTTCCCCTCAACCCAATTCTTTTAATCCTAGGAAGATACTGTTATTGTTATGCGTG TGTATATGAATGTACTTATATACCTATATGTCTATTGACAAATTCTCAAGTGCTCTAGAGCAAGAGATAACACTTGTTCT TTACCATTAAATGTGTCCACCCTCAACCATGTAATCCATCATGATGTCTCTGTAGTTTCATTTTTAATATATTTGATGTG ATTCAGATCCAATGGCTTAGAATAAGAAACCTAAAATTTGCTTGTATATTTTAGCTTTGACTGTTTCCCATATGGTGAGA TTTTTATATTCCTATGGGAATTCTTTTTAGTAGAGTGTCAGGTGGCTACAGGTTTCCACTCTGCTAAATCATTGAATATA TGTTTAGGTTGGTTGCTTTTACTTATGATTTCTGTTTTTACTTGGCCGATCTGTAGGGACATGATATTCTCATGGCTACA ATGCTTAATGGAGCAGCAATCATGGATGGAGCTCTGCTACTCATTGCTGCTAATGAAAGCTGCCCTCAACCTCAAACTTC TGAGCATTTAGCTGCGGTTGAAATTATGCGTCTGCAGCACATTATAATCCTTCAGAACAAGGTAGACCTAATCCCAGAAA ACGTGGCAATCAATCAGCATGAAGATATTCAGAAGTTCATTGCAGTAAGTGTTCTTTGAAGTGGTCTATGCTATACATGT GAATCCCTTACACTGTCCTGAGCATACTCTTCTTTTTTGGTGGTTTACCAGGGAACTGTTGCTGTTACGGCACCTGTGGT ACCTATTTCAGCACAATTGAAGTATAACATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCAATCCCCGAAAGGA ACTTCATTTCTCCACCAAATATGATATTAATTCGATCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATAAAA GGAGGTGTAGCTGGTGGAAGCATTCTGAGGGTAATTCTTTTTCTGGTCCATTTCCCAAATATAATTCTTCATTTGCACGA CGAACTTGCAGATGTTAATATTTTTAATGGTTGGAATGATTCTACTGTAGAATTTGAAAGTGTTTGGCGAATAATGCCAA TTGCCAAGGGTGAGCCCTATTATACATGGATTCTTAATCAATGAGTAATACACGGCCTTCAATTTGTTGAATCTTTTTCT ATTTTTGAAAACTTATTTACACATGTAATTTTTCAGAATACATGGAACATTGTATGCCATTCTGTTGACAAACAGAATGT CAGTATTTTGGTGTTTGGAATGATATCTGCCTTTACATTTATATGTATAATTTTTAAAATGTTAAGTCTGCTGTAGATTT TTGAAGTGTATGTTGTGTGCTTTATAATACATGGATGCTTAATGAATGAGAAGCAAGTGGCCTTCTAATTTGTTGATTTT TGTTTTGGAAACTCTTGATGCATGTTATTTTCCAAAACTTTTACAGGGTGTAAAGCAAAGCTGACAATTTGTATTTTACA GGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGGTTAATTGGTAAAGATGTGAATGGAAACATTCAATGCA CACCCATATACTCCAGGATAGTTTCATTGTACGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTTATTGGT GTTGGGACCACGATGGATCCTACTTTGACGCGTGGTGACCAGTTGGTAGGGCATATTCTTGGAGAGGTTGGATCACTGCC TGAGGTTTTTGTTGAACTTGAGGTAGGTGGTTATTTAGTTCATAATGACAAGTGGGGATAAATAACTTGCCTTTCAAAAT ATCTTCGTTATTCATTTTTACTTGTGTGTTAAGCTTCCTTGTCATGACTTGCGAGAGAGATGACATTCAGTTCTCCTGTT GCTGGAAAAACTTTATTTGTAGATGAATTGGTGACTTGGTATTGCAGGTTAACTTTTTCTTGCTTCGGCGGCTTCTTGGT GTCCGAACAAAAGGCTCAGAGAGACAGGAAAAGGTAGCTAAGCTGACCAAAGGAGAGCCGCTACTGTTGAACATTGGATC AATGTCAGCAGGTGGCAAAGTAATTGCTGTGAAGAATGACCTTGCTAAATTGCAACTCACTACCCCTGTGTGTACTAGCA AGGGTGAGAAGATCGCACTTAGTCGACGTGTCAAGAAGCTTTGGCGTCTTATCGGGTGGGGTCAAATTCAAGCCGGAATC ACTCTTGATGTCCCTCCTGCCCCTGCACTGTGTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0145300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGAAGTACCAGGGTTTGAAAACTGCAGGATGAAATTGTTGAGACATGTTTCTTTTGTCGATTGCCCGGGACATGA TATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTCTGCTACTCATTGCTGCTAATGAAAGCTGCC CTCAACCTCAAACTTCTGAGCATTTAGCTGCGGTTGAAATTATGCGTCTGCAGCACATTATAATCCTTCAGAACAAGGTA GACCTAATCCCAGAAAACGTGGCAATCAATCAGCATGAAGATATTCAGAAGTTCATTGCAGGAACTGTTGCTGTTACGGC ACCTGTGGTACCTATTTCAGCACAATTGAAGTATAACATTGATGTTGTGTGTGAATATATTGTGAAAAAGATCCCAATCC CCGAAAGGAACTTCATTTCTCCACCAAATATGATATTAATTCGATCATTTGATGTCAATAAACCTGGTTATGAGGTTGAT GAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGG GTTAATTGGTAAAGATGTGAATGGAAACATTCAATGCACACCCATATACTCCAGGATAGTTTCATTGTACGCTGAACAAA ATGAGCTTCAATTTGCTGTGCCTGGAGGCCTTATTGGTGTTGGGACCACGATGGATCCTACTTTGACGCGTGGTGACCAG TTGGTAGGGCATATTCTTGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTTAACTTTTTCTTGCTTCG GCGGCTTCTTGGTGTCCGAACAAAAGGCTCAGAGAGACAGGAAAAGGTAGCTAAGCTGACCAAAGGAGAGCCGCTACTGT TGAACATTGGATCAATGTCAGCAGGTGGCAAAGTAATTGCTGTGAAGAATGACCTTGCTAAATTGCAACTCACTACCCCT GTGTGTACTAGCAAGGGTGAGAAGATCGCACTTAGTCGACGTGTCAAGAAGCTTTGGCGTCTTATCGGGTGGGGTCAAAT TCAAGCCGGAATCACTCTTGATGTCCCTCCTGCCCCTGCACTGTGTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0145300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCEVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV DLIPENVAINQHEDIQKFIAGTVAVTAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMILIRSFDVNKPGYEVD EIKGGVAGGSILRGVLKVNQFIEVRPGLIGKDVNGNIQCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRGDQ LVGHILGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVKNDLAKLQLTTP VCTSKGEKIALSRRVKKLWRLIGWGQIQAGITLDVPPAPALC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51722
1 135 135 26.271
IPR000795
PANTHER
PTHR42854:SF9
1 359 359 1.5E-222 –
PANTHER
PTHR42854
1 359 359 1.5E-222 –
Gene3D
G3DSA:3.40.50.300
2 136 135 6.1E-39 –
SUPERFAMILY
SSF52540
16 134 119 8.4E-27
IPR027417
Pfam
PF00009
16 132 117 5.0E-17
IPR000795
SUPERFAMILY
SSF50447
136 250 115 4.99E-35
IPR009000
CDD
cd03688
137 250 114 7.0758E-61 –
Gene3D
G3DSA:2.40.30.10
137 252 116 6.1E-48 –
Pfam
PF03144
164 236 73 1.2E-8
IPR004161
SUPERFAMILY
SSF50465
251 348 98 2.4E-29
IPR009001
CDD
cd15490
253 347 95 9.55758E-45
IPR015256
Gene3D
G3DSA:2.40.30.10
253 353 101 5.4E-37 –
Pfam
PF09173
258 347 90 2.2E-34
IPR015256

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0145300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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