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LotjaGi5g1v0190800.3

Overview

Field Value
Gene ID LotjaGi5g1v0190800
Transcript ID LotjaGi5g1v0190800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pre-mRNA-splicing factor SLU7; TAIR: AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor; Swiss-Prot: sp|A2YQU8|SLU7_ORYSI Pre-mRNA-splicing factor SLU7; TrEMBL-Plants: tr|A0A0A0LFN9|A0A0A0LFN9_CUCSA Uncharacterized protein; Found in the gene: LotjaGi5g1v0190800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:48333286..48339651) extracted from Lotus japonicus Gifu genome v1.2.

TGCTTTGATGTTGCAGCAACCTTTAAATCTAGGGAGGACCACAGAAAACAGATTGAATTGGAAGAGGCACGTAAAGCTGG GCTTGCACCAGCTGAGGTAGATGAAGATGGGAAAGAGATTAACCCTCATATCCCCCAATATATGTCTTCTGCTCCATGGT ATCTGAATGCTGAGAAACCTGTAAGCTTCACAACTTTCTACTACCTTCCTTCTTCTGTTCCTCTAGCCAGCCCCTATTTG TTATGACAGTAAAGTTCTGTATTCTGAGCCGCTTTTTCTATTTTTTCTTGGTAGAGTCTAAAACATCAAAGGAAATGGAA ATCTGATCCGAATTATACGAAGTCTTGGTACGACAGAGGAGCAAAAACATTTCAGGCTGACAATTACAGGAAGGGAGCAT GTGAAAAGTAAGTGGGCTTTGTTGTTTTTGTCAAGATTTTCAAATCCTTGTATGTCTCTGTTTATCTGTTTTGGGAACGG TGTCTTGCTACATGAAGATTTGAACTGTAAAACGAGTACAGGTTGGTTTTCTTTAGTTGCAATGATAAACATGGATTAGA TATGGAGTTATTATGCTGGTAAACTCATGTAATGATAATATTCAATTGTTGAACTTATCCTATTAATTATGTCCCTTAGT ACATAGTTTTGTGATGCTATTTTAATCAGATCAAAATGCTGGGCCAGGCATGATTAGTTTTATTTATTCTATTATAAATT CTTATACGAGAAATCATTTTATTTTTTCTTGAGGTTTACATTGATGAATTAAAGCCGACTTAGTTACTCATAAGTCATAT TGTCATAACCATAGACTTGTTGTTTAGGTGTCTTGTGCAAATTAAAATAACAGATGTATAGCCTCATTTGTTATTGCCAA ACATCCTGCTGTGCTATTTAGTTTAGCTCTCTCTTATGCAAAGTCAATCAAATTCTTTCCTGGACTCGTTTCTTCCGACT CAAATGTGCTTATGAAGATGGATGTGTGATAGAACTGGACGAATTTAAGGTAAAGATGCACTTTCTATTGGTAGCATGAT ATGAATACAGGATATCCTTCTCCAGCTATCTGAGAAAGCTGAGCTCTCCCTCCCAATTTTCACTCAATGACCCAAAATTC ATCTCCATTATTTGCCTCCTGGTATTTATATCTTCTGATTTCTCTCTTTACCTATCTCTAAATGATGATTGGGGATCTGC AAAAAATGTGTTGCTTATGAAGTTCACTTTTAAAGCTAGCATCTATCATACCATTTCATGTCTGCGAGAAATCTAGTCAT AATATTTTACGTAGTTAGTGTTAGAAATATAATCACATGGTAGGTGGACATGTGCAGTATCCACGGTTCAAGCCCAAGTG GGTTCTTGCGCTGCGTGAGGGGGCATGTTAGAAATATAACCACTCATGTACCCTTACCCAATAGCTTAAGCTTTTGGGAT TTTGGTTCATGACAATTGGGTTATGTAGAAATGCTCACCTTTTTTAGCTCAGGATATTGTGTAGCGTTTCTGATATACTC GTATTGTGATCTTGTCATCATGAGAATCTAGTTATCTTTATCTCGTTTCTGTGATCAAGAAGTGGGTGTTGTAAATTTTA GGTATCAATCACAGAATGGTTAAATCAAAGAAATGGTTCTTAAAGAAAAGCAAGCTTGCCTATATTTAGGGGTTTTTTTT TCCTTGCACTCCTTTTCTTCTTTGCTCTTTTTTTTTGTTATGTGGGCGGGGTTGCTTTTCTGATATCAATTGATAAAATT TAAAGATATGATAGTTTTATTTCAAGCGGCGTGAATAATTTTATTTAATATTTTAAGTTAAACTTGTTTTTTCTTGAATT TTTATTTGACTTATTTCGTTAGTTGTTAAGATTGGCATTATTTTTCACCCATTAATTTTTGGCTTATATTTGTTCTGAAG CTGTGGTGCAATGACACATAATACAAAATCATGCGTGGAGAGGCCTCGGAAGCTTGGAGCAAAATGGACCAACATGCATA TCGCTCCTGATGAAAAGATAGAAACATTTGAACTTGATTATGATGGCAAGAGAGATCGATGGAATGGTTATGATCCAGCC ACCTATGCTCGTGTCATTGAAAGATATGAGGCAAGGGAAGAGGCTCGGAGGAAGTATTTAAAAGAACAGCAATTAAAGAA ACTGGAGAAGAAAAACAAAAAGCAAAGAGGGGAAAATGAGTCTAGTGATGATGATGAATATGAAGATGAAGATGCTCATG CTCTAAAGGTTGATGAAGCCAAGGTTGATGAGAGCAAACAGGCGGACTTTGCCAAGGTTGAAAAGCGTGTTAGAACAACA GGAGGTGGTAGTACAGGAACTGTAAGGTGTGCTGCTTTACTGTTTGTATTTGTATTCCTATTTGTTTGTTATGTATGTAG CACATCAGAATCAGTGTCTCACGCAAATAGCTTCACCCAAAACAATGTCGTATTATGTGATTATTATTCTGATTCTATTT GTTTGCTTCAGAAACTTGCGTATCCGAGAGGACACTGCAAAATACCTTCTGAATCTTGATGTCAATTCTCCTTATTATGA TCCAAAAACCCATTCTATGCGAGAGGATCCCCTTCCTGATGCTGATCCTAATGAGAAGTTCTATGGAGTGAGTATCATGG AAGATTTTATTTGGTTGTTAGATCTGTAAAACATTGGAAATGCTTTACTTAATGTGCTTACTTTTGTCCTGACAGGGAGA CAACCAGTATAGAATGAGTGGACAAGCTTTGGAGTTCAAGCAACTTAACATTCATGCCTGGGAAGCATTTGAGAAAGGCC AGGATGTCCACATACAAGCTGCACCTTCCCAAGCTGAATTACTATATAAGAATTTTAAGATAATGAAAGAGAAGTTGAAG TCACAAACAAAAGATGCCATAATACAGAAGTATGGAAATGCAGCAGCCCAAGAAGAGCTTCCAAAGGAGCTTCTTTTGGG GCAAACTGAGAGACAAGTCGAATATGATCGCGCTGGCAGAATTATAAAAGGCCTGGTATTATTCAATATGAAAATCATGT CATTTTTGTTTTCTTTATATGGATGAAACATATTTAATTTAATTTTTATGCTTTATGGTTTTGTTTCCAGGCCTTTACTT ACCATTAGGTTTTAGTATGATATTCCATTTATTAGGCTTATCAGTGAGAAAATATAGGAGAGTCTGATATGATGTCTTTT AGATTTTGGTGATCTTGCATGTGATCATTTGACATGTTTTTCTTTGATTTCTGAATTTAGAACGTACAATGCTATGGGAG GATTAAATAAGTTACTAGAATCATATTCCTTAGTTTGAATGCATTTTAAACTACAACTGATCAATTGTAGTTTTCTCTGT GCAGTACCCATGTTTGAATGAAGTGGTGTATACTTTTTTTCTTTTTTGAAATTGTGCAAATTTTCTACTGCGATAAAGTT GTAGACTAGTTTTCAACTTTGTCACTTAATCATCATAATGCTTCAAATGGTGGAAACTTTTTCTCTTCTGGTGATTAATA TTTTGGTTTTATACTTGCAGGAGGCATCCCTTCCAAAAAGCAAGTATGAAGAGGATGTGTACATTAATAATCACACAAGC ATATGGGGTTCATGGTGGAATGATCATCAATGGGGATACAAATGTTGCAAGCAAACTATACGGAACAGTTACTGCACTGG CGCAGCAGGAATTGAGGCTGCTGAGGCAGCAGCGGATTTAATGAAGGCAAACATTGATCGTAAAGTAGCATCTGAAGGCA AGTCTTCCTATTTAACCATTTTTAGAATATTCTTTGGGCTGTCATTCTTTATTTGAAATTGCTTCTATATGATTTATATG GCATTCTGTTTATTTTATCTTCGTCAATGCTGTTGTTTTCCATTAACTTTGTTTGGACACACCTTGATTTTTTTTTTTGA AAATAAACATGAATATTATTATGGGCCAACCGGCCTAGAAGCAATTACATCCAAGTTTACCAAGCCAATAACGGCATCAG GAACTTCTTCCACCCATACAGAATTCGCATAAGTGGAAGCGTTCTTAGCCAAAAAGTCAGCAACCACATTACCAGAGCGT CTAACAAAGGACAAAGAAAATAAATCAAACAGCGGAACATAAGAACGACAATCTCTAATAATATTATCCAAATAGGAATG ACCCACCACCTCCTTCTGCCACCACTGAAATAACTGGAGACAATCTGATAGAAACCAGAAATTGTAGATGTATTATTGAA GAACCCTAATCCCTAATTTGGGAATTAGAGCAAGTTACATGGAAGAGATGCCAAACACTCTTCCCAAACCTAGAGAGAAA CCCAATGTTCTCCCTAAACCCCAATTCCAAACTGAATACAAAAGATACCCCTAATGTTCACTAACCTCTCTTATTTATAG GCAACATGCCTTATAACTGTCTAACTAACTTCCTAACAACTAACAATTCATAACTAACCCTGCATTCCTATCACAATCTG TCTCTAAACAAACTCGCCTGAAGCCAAGCTCAGTCGCCAGCTGCATCGTCCACCTCAAACCACACACCTCCGCCAAAAGA GATGAAAGAATGGGCACCGGGTAGGAGGTAGCAGCTGCCATGATCTCGCCTTGATGGTTGCGAGCCACCATACCCAGCCC CGCCACCTTACCGTCCACAAATGAAGCATCAAAATTCAGCTTAACCACTCTTTCTTGAGGCCTTCGCCACACAGATATGC TCGTCGATGTCCCCTCACGGGCCTTCGAAGGAAGCACCCTTGCCATCCCCATCACGCGGTCAATGACCTCTGCAACCACC AGCCTACCATTACGAAACAAGACCCTATTCCTCACCTCCCAAATCTGATAAATCAGTGTTTGTGCCATGGCTACCACCTC GGGCTGTTGCTCTTGCAGAATCGACGTCCACATCGCTTGGAAAGAAGGCACGTTCTCGACTCTAAGGGAGAGGGGAGAAG CGTACCAAATCGCCATTGCCGCCGGACACCGCATGAAGATGTGTTCCGTAGACTCGCTATCATGTCCACAAAGAACGCAG TCTGGGTCTGTGTCTACATGTCGCCGGAAAAGTTGTTCACGAACCGGAAGGAAGCCTCTGATAGCTCTCCAAGTTGTCTC CTTGCATCTAGGAAGTGCGCCGGTAGCCCAAAACTTTCGCCACAAATTTGGAAGCAAAGTCAACCTCATCGAGGAAGATG ACGAAGCCACCTCCAAGGCTAGTAAGCCACAAATGTAATTGTACCCTGTTTTTGATGTATATTGACCATCAGAAGTGTAA GGCCAAGATAAAACATCTTCACCCCCGTGCAAATCCAAAGGAATGGCTAGTATATGCGATGCTGTTGCTGGATGGAAAAT TTCCTCAATCCATTCTCGGTTCCAACGTTTTGGACCTTCCACAATCATGTCTGAAACACGAGCAATGCCAAGAGCTTCCG CCACATCAATACGATAGGTGAGCAGGACTCCATTTGGCAGCCACTTATCTGTCCATGCCTGGACCTTTGAGCCATCTCCT ATGTGCCATAAGCCACCTCTTTCAAAGATCCAACTAGTTTTAAGGATACTAGACCAAGCGTAGCTAGGGCGATAACCCTT CCGGGCTCCCCAAATCGACCCTCTCGGAAAATAAACCCCCTTGAAAACCTTTGCCAGTAAGGTATCCGGATGAGGACACA CCTTGAATTTGTTATGACATATGTTTGTTGACTATTTATGTGCTTTCCATATTGTATGATCTAATCTGATATAAGAATAA TAACAACTGCTTGTATCATCAATTTCTCATTGCATGTGTTTCATTTCAACAAAATGCAGATACTCCTGCTCCAGCAGAGG AAAAAAGGCTTGCTACTTGGGGAACTGATGTACCTGATGATCTGGTCCTGGACCAGAAAAAACTTGATGAGGCCCTTAGA AAGGTAACTTTTTATTATTATTTTTTTTCCAATTTTCTTTTTCCTTTCGAATATTCATTTCTTATTTAGATATCATGTGA AATTGTGAATCACTACATTGCCTAATTTGGAGCTTTACAGTTCGAAGATATGTCGGATATGAATAATCATTTGGTTATCT TAATTTGTTAAACAAACCATTTCTGTTTGATCAGGAGGATGAAAGGAAGAGGGAGGAAAAAGATGAAAGGAAACGCAAGT ATAATGTTAGATGGAATGATGAGGTAGTGTTTTTGTTTAGCAATTTTGTTCACCTGTAATGTAATTCATAACACATCAAT TATGTTGGGAAGATCAAGATTGTGTTGACACTATAATGCTTTTTGCAGGTCACTCCTGAAGAGATGGAGGCATATCGCGT GAAAAAGATTCATCATGATGATCCCATGAAAGATTTTCTGCATTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0190800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTCTGCTCCATGGTATCTGAATGCTGAGAAACCTAGTCTAAAACATCAAAGGAAATGGAAATCTGATCCGAATTA TACGAAGTCTTGGTACGACAGAGGAGCAAAAACATTTCAGGCTGACAATTACAGGAAGGGAGCATGTGAAAACTGTGGTG CAATGACACATAATACAAAATCATGCGTGGAGAGGCCTCGGAAGCTTGGAGCAAAATGGACCAACATGCATATCGCTCCT GATGAAAAGATAGAAACATTTGAACTTGATTATGATGGCAAGAGAGATCGATGGAATGGTTATGATCCAGCCACCTATGC TCGTGTCATTGAAAGATATGAGGCAAGGGAAGAGGCTCGGAGGAAGTATTTAAAAGAACAGCAATTAAAGAAACTGGAGA AGAAAAACAAAAAGCAAAGAGGGGAAAATGAGTCTAGTGATGATGATGAATATGAAGATGAAGATGCTCATGCTCTAAAG GTTGATGAAGCCAAGGTTGATGAGAGCAAACAGGCGGACTTTGCCAAGGTTGAAAAGCGTGTTAGAACAACAGGAGGTGG TAGTACAGGAACTGTAAGAAACTTGCGTATCCGAGAGGACACTGCAAAATACCTTCTGAATCTTGATGTCAATTCTCCTT ATTATGATCCAAAAACCCATTCTATGCGAGAGGATCCCCTTCCTGATGCTGATCCTAATGAGAAGTTCTATGGAGGAGAC AACCAGTATAGAATGAGTGGACAAGCTTTGGAGTTCAAGCAACTTAACATTCATGCCTGGGAAGCATTTGAGAAAGGCCA GGATGTCCACATACAAGCTGCACCTTCCCAAGCTGAATTACTATATAAGAATTTTAAGATAATGAAAGAGAAGTTGAAGT CACAAACAAAAGATGCCATAATACAGAAGTATGGAAATGCAGCAGCCCAAGAAGAGCTTCCAAAGGAGCTTCTTTTGGGG CAAACTGAGAGACAAGTCGAATATGATCGCGCTGGCAGAATTATAAAAGGCCTGGAGGCATCCCTTCCAAAAAGCAAGTA TGAAGAGGATGTGTACATTAATAATCACACAAGCATATGGGGTTCATGGTGGAATGATCATCAATGGGGATACAAATGTT GCAAGCAAACTATACGGAACAGTTACTGCACTGGCGCAGCAGGAATTGAGGCTGCTGAGGCAGCAGCGGATTTAATGAAG GCAAACATTGATCGTAAAGTAGCATCTGAAGATACTCCTGCTCCAGCAGAGGAAAAAAGGCTTGCTACTTGGGGAACTGA TGTACCTGATGATCTGGTCCTGGACCAGAAAAAACTTGATGAGGCCCTTAGAAAGGAGGATGAAAGGAAGAGGGAGGAAA AAGATGAAAGGAAACGCAAGTATAATGTTAGATGGAATGATGAGGTCACTCCTGAAGAGATGGAGGCATATCGCGTGAAA AAGATTCATCATGATGATCCCATGAAAGATTTTCTGCATTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0190800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSAPWYLNAEKPSLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKWTNMHIAP DEKIETFELDYDGKRDRWNGYDPATYARVIERYEAREEARRKYLKEQQLKKLEKKNKKQRGENESSDDDEYEDEDAHALK VDEAKVDESKQADFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGD NQYRMSGQALEFKQLNIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEELPKELLLG QTERQVEYDRAGRIIKGLEASLPKSKYEEDVYINNHTSIWGSWWNDHQWGYKCCKQTIRNSYCTGAAGIEAAEAAADLMK ANIDRKVASEDTPAPAEEKRLATWGTDVPDDLVLDQKKLDEALRKEDERKREEKDERKRKYNVRWNDEVTPEEMEAYRVK KIHHDDPMKDFLH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12942
1 491 491 4.0E-194
IPR039974
Pfam
PF11708
89 362 274 2.0E-94
IPR021715
Coils
Coil
115 149 35 - –
MobiDBLite
mobidb-lite
132 156 25 - –
Coils
Coil
436 456 21 - –
MobiDBLite
mobidb-lite
443 463 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000386
Molecular function Second spliceosomal transesterification activity Catalysis of the second transesterification reaction of spliceosomal mRNA splicing. Ligation of the two exons occurs via a transesterification reaction where the free 3'-hydroxyl group of the 5' exon is the nucleophile attacking the 3' splice site. Non-expressed sequences are now detached from the exons. In cis splicing, the intron is in a lariat structure.
Subterm of
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0030628
Molecular function Pre-mRNA 3'-splice site binding Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0190800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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