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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0229400 |
| Transcript ID | LotjaGi5g1v0229400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere repeat-binding factor 4; TAIR: AT1G72740.2 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5; TrEMBL-Plants: tr|V7APC8|V7APC8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0229400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53655697..53659859) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTTCCTTAAACCCTAGTTCGTTCTTTCTTTTGCGATTCTTCGTTCCTCTCGCTTCTCTCGCTCCTACTACCACCAG GTACATGATTCCCTCTTCTCCCTCTCTTGAATCACTGTTGAAATTTATGTTGGTTAATCTGATTGCATCTTTGAATCTTC TTATGCATGCAAATGCGATGTTGTCTGGTCTGCTTCTTTTCTACTATGTAATTGTAATGTAGACTTGTTGGAATTCTATT TTATTTGTGATTTCTTGTTGTGTGGTCAGTTTCAACCTAATATTTGAATCATAGCTTTGACACCATTATTGGGAGGGAGT GGTAAGTAAAAATATAAACGTTTAGTATAAAAGTCAGGCAATTAATATTATTGGTACAAGTATTGTAACAAGAAACAATA TTTTGTCACTGACTTGAACTATAGCCATAAGCGACGTGAATCCGGACAACCGTTAAACACATAATTAATGTCTTCTTACT TCGCGCGCCGCACATAGAGCAATTCAAAAATCAGTTAACTTCGATTATCTATTACTCACAATTTTTATTTTACACTAAAA AAATTTCTCATAATCACTCATAATTTTTATTCTTTTGGGTGAAGGATGATACTTTGCAAAATGAATTAAATTGAATAGAA TCATGTAAATTTTGAAGTTCAATTGAAATTGAAAACACTTACTTGTGCAGTGAAAGATGGGGAATCAGAAGCAGAAGTGG ACGGCTGAGGAAGAAGACGCTCTCCACCGTGGCGTCCAGAAGTACGGCGCAGGCAAGTGGAAGAACATCCTCAAAGATCC CGAATTCGCTCCTTCCCTCACGAGCCGTTCCAACATCGATCTCAAGGTCAGAACTTGCCATGTATTTTCCTTTTGATTTT TTCCAATTTCTCTGAATCTTTTTCTAGGATTAGGGTTTTGTTTTCCTTCAATCAATTTTTTATTTTTCAGGATAAATGGA GGAATTTAAATGTTGGCACTGGTCAAGGCTCCAATGTTAAGTCTAGAACTCTCAAGCCCAAACTACCAGCACCTTGTGCA GTTACAACTCCTGATCCTACTGTGCAAGATGTTGCTCCTGTGCAAAATGCTACTCCTAAGATTCCATCTCAAAATTCTTC TGAAAAGGATCATGATGTCAAAGTTCCTCCTCGGTATGTAGCCTCTTAACATGAATACATGTTATACCTTACTTTGTCCT GTCAATCCCTTATTAAGAGGAGTTTCTGAACTCTTATTATTTCTATTAGGTACAATGGAATGATATTTGAAGCTTTATCG ACGATCCAGGATGCTAATGGTTCTGATATGAATGCCATTGCTAGTTTCATCGAGGTTAGGTGATTCTTTTTTGGGGGTTG GGGTAATATATTTGTTTATGTGGCAATACGCTATCACTATGATTTAATTATGGGTCAAAAGAGTTAAAGATTGAATGAGT CAAATTGTGATTAAATATCATGGATGGAATTGTGGCTGTGCAATTAGGTTCTATGGCTCCCCATTGCTGTTTCGCGAGAT AGTACTAATAAACTAGTTTTTAGATGAGGATTAATTATCCTTATAACAGAGGATATCTTTGAATTTAAATATCCTAATGC CATCTGCAGTTTATGTTTCACAACAATAACATAAGCCTATCCCCACTAGATGGAAAGTTACTTTAATGTCGATATTTAGG GATTAGTTTTTATGGGATACAATTGTAGTAATGGGATTTGACCCTATGACCTCATGGAAGTTATCCATTCCCTCACGCAC TTATCAATCTTAGTGGTGTGCCATTTGTATTTTACATTTGAGAATTTGAAATCAATTCGTCATCTCAAAGGACCTTCTTG TATAGTTACCATGTTTAAATTGTATTCACTCTACTATGATCTATCAAAGCAATAAGCTTACTTTCTTATTTCTTACGGTT ACAGCTATTTTTATTCCAATTGTGAGAAGCAAAAGTATGTCACATAGACTGATCATATTGGTTCGTATCCTCATTTTAAC TTACTTTTTAGCCAAAACAAATGGGTTTGTCTTACATTTTCCTTCTATCTGCGCTCATCCCTGCACTTTTCTTTTCGGAG TGTAGGTGGAAATGTAGTTAGTTGACTATGTAGCATGTATTTGTGCATAATTTCATTTTGATCTTTTAAATACCAGTAGT ATATCGTAGTATGCTTTTATTTTAGAATTTACAAGGAATAATGATTTATATTATACTGCAGCAAAAACACACACTTCATC AAAATTTCAGAAAGGCATTAGGTGCAAGGTTAAGGAAGCTTGTTAGTCAGGGGAAGCTTGAAAAGGTAAATAAGTCCTCT ACGCTGCTTGTATCGAAATATATGTAATAGCTTTTCATTTGTTATTTCAATCTTGAAGCTTTTCCTTTAAATCTAAAATC TGTAATATGTGCATTCCTTTATTTACTGATTCCCATTTTTCATGAATTATGGCATTGTTGCACCATAAAAGATACATCTA AATTCTTTTAGTTTTTATCCTTATCATGTTACACTTGGCTTTCATACTTGCTTAACATCGGATGGTTGACATCTTTTCTC ATTTTGAAGAGCAAGCATCTGCCCCCTTCCCATCGTTTAATGTTCTTATTTTTAGTTTTGAGTCATTTGTCATGGTTACT TCTCAGTTCTCACCTGGGTTTTTCAGGTAATTTTCATTCTAGACATGCATCTGTTGGAACTTGGAAAGCTATTTTGCATT AATAATAATGCTTTGTTTTGCTTTGCTTCACTTTGTGGGTTCTATGAGGAGGAGCTCTTAGCTTCCTCTTCTTTGTTTTC CTTTACTTCAACGGGATTAATTTTTTTTAATCACTTGTTAAATTGTTGCTTTAGGATTGCTAGAGGCTGTAGGCCGCCTT TTCTCAGAGACTCTACATTCTTGGAACATAAGCAAAACATTTCCCATATTAAAGCAGAATGATCTTGAAACTTGAAGCTT GTTTTCTTATGTGAGTATTTGAACTCTTTACATCTCCTACAGGTACACAATTGCTACAAGATTAAAAAGGACACCCCATC AGGAACGAGATTACCCTCTCCAAAATCACCTGTGCCAAAACAAAATGAGATTTGGCCACAACAATCCCCGACCTCTAGTT TTGTAACAAGGGATGAGATAATAAAGGATGCCGCTGATACTGCAGCCTACAGAGTTGCTGACGCCGAGAACAAATCATTT TTGGCCGCCGAGGCAATCAGGGAGGTGGTGAGAATCTCAAGGCTGGCTGAAGATACTGATTCAATAATACAGCTTGTGCA AGATATTTATGAACGATGTACGGCAGATAAGCAACCCTAACTACACATCAATATATTTTCTATTCGTAATTTTTTAAGTA GAATAACCATTGTTCTTTCGGGTCAATTGATGGCAGGTTCACGTGGTGAAATTGTTCTTTTGGCTTGAGTTAGTGAATGT GAGCCGATATGGATCCAGCAAATTCATCAATCCGGTGAATATTATTTGAGTAGCTCTCTATTTTTCCTCCCTCTCCAATA GTATTAGTACCGGTTAGTATTTCTTGTGAAGCCATGTTTCTTTGAGGCTGGTACACCTTCCTTGGTCTCTAGATATTATC CATGGAAGCTGTCTTTCATTTGAGATTGCCACAAAGAAAAATGTCTTCTTTGATGTATACCTCCATATGGCTGCTGATGT TAGAATTTTTACTGGTATATGTAAGTAGGAGTATAAAAGTTGTAAGTGTTTGTTTGTAAGATATATCATTATTCAAACAA ATTTGATGGAATATTGAGCTTCTCCAAAAATTCATTGAACTGTTGTTTTTCAAATTATGAATTTGGACTTACCTAGTAAA TTGAGTTTTATGTTCGCTGTGGTAAATTTAACTTACATGTGGGGATTCTAGAATTTTATGGTGAAGCCAATGTCAAAACT TAAGTAGTGTTTTAATCTGGAAGAGTGCCACCAACACTTTCTTTTACACTCTTTCCAGCCCTCTCTCATTGATTTGTTGA AATACATGTGAGTCCCACTAAATTAGAAGAGAACCTGATTTTTTAGTGGACCCCGCATGGATTTTAACTAATTAATGGGA GAATATTGATAAGAGAGTGATAAAGTGCGTGTTGCTAGCATTTTTCTTTGATTTTTGGATGTGATGTTAAGAGGAAGTCT GCC
CDS sequence (LotjaGi5g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATCAGAAGCAGAAGTGGACGGCTGAGGAAGAAGACGCTCTCCACCGTGGCGTCCAGAAGTACGGCGCAGGCAA GTGGAAGAACATCCTCAAAGATCCCGAATTCGCTCCTTCCCTCACGAGCCGTTCCAACATCGATCTCAAGGATAAATGGA GGAATTTAAATGTTGGCACTGGTCAAGGCTCCAATGTTAAGTCTAGAACTCTCAAGCCCAAACTACCAGCACCTTGTGCA GTTACAACTCCTGATCCTACTGTGCAAGATGTTGCTCCTGTGCAAAATGCTACTCCTAAGATTCCATCTCAAAATTCTTC TGAAAAGGATCATGATGTCAAAGTTCCTCCTCGGTACAATGGAATGATATTTGAAGCTTTATCGACGATCCAGGATGCTA ATGGTTCTGATATGAATGCCATTGCTAGTTTCATCGAGCAAAAACACACACTTCATCAAAATTTCAGAAAGGCATTAGGT GCAAGGTTAAGGAAGCTTGTTAGTCAGGGGAAGCTTGAAAAGGTACACAATTGCTACAAGATTAAAAAGGACACCCCATC AGGAACGAGATTACCCTCTCCAAAATCACCTGTGCCAAAACAAAATGAGATTTGGCCACAACAATCCCCGACCTCTAGTT TTGTAACAAGGGATGAGATAATAAAGGATGCCGCTGATACTGCAGCCTACAGAGTTGCTGACGCCGAGAACAAATCATTT TTGGCCGCCGAGGCAATCAGGGAGGTGGTGAGAATCTCAAGGCTGGCTGAAGATACTGATTCAATAATACAGCTTGTGCA AGATATTTATGAACGATGTTCACGTGGTGAAATTGTTCTTTTGGCTTGA
Protein sequence (LotjaGi5g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNQKQKWTAEEEDALHRGVQKYGAGKWKNILKDPEFAPSLTSRSNIDLKDKWRNLNVGTGQGSNVKSRTLKPKLPAPCA VTTPDPTVQDVAPVQNATPKIPSQNSSEKDHDVKVPPRYNGMIFEALSTIQDANGSDMNAIASFIEQKHTLHQNFRKALG ARLRKLVSQGKLEKVHNCYKIKKDTPSGTRLPSPKSPVPKQNEIWPQQSPTSSFVTRDEIIKDAADTAAYRVADAENKSF LAAEAIREVVRISRLAEDTDSIIQLVQDIYERCSRGEIVLLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 62 | 62 | 12.117 | ||
| PANTHER | 1 | 282 | 282 | 8.7E-110 | – | |
| PANTHER | 1 | 282 | 282 | 8.7E-110 | – | |
| Gene3D | 2 | 58 | 57 | 2.5E-17 | – | |
| SUPERFAMILY | 2 | 58 | 57 | 5.89E-16 | ||
| SMART | 4 | 59 | 56 | 3.8E-8 | ||
| Pfam | 5 | 56 | 52 | 6.6E-10 | ||
| CDD | 6 | 57 | 52 | 3.11163E-21 | – | |
| MobiDBLite | 55 | 77 | 23 | - | – | |
| Gene3D | 113 | 201 | 89 | 6.6E-9 | ||
| SMART | 113 | 178 | 66 | 2.7E-12 | ||
| ProSiteProfiles | 115 | 183 | 69 | 20.585 | ||
| Pfam | 117 | 177 | 61 | 3.4E-10 | ||
| SUPERFAMILY | 117 | 192 | 76 | 7.07E-14 | ||
| MobiDBLite | 183 | 209 | 27 | - | – | |
| MobiDBLite | 189 | 209 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0229400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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