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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0230100 |
| Transcript ID | LotjaGi5g1v0230100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1-like 1; TAIR: AT1G70510.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1; TrEMBL-Plants: tr|I3SV38|I3SV38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0230100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53740431..53747569) extracted from Lotus japonicus Gifu genome v1.2.
CCGTCCCGTCCCGCCAACCCATATTGCCACCCTATATGTATTGAAGTTATGATTCATTCATACTTTTACTCATTTTATAT CTTTATTTTTTATTAATTTTTTTCTTTTTTCAATTAAATTAGCTATCACATTTTACTTTATCTCTCTTTTATTTTTATTT CTCTCTTTTTTCCATACTTCCATTTCAGTACAAGGTGTGAACAAAACAATATGTGAAGTATCAGTATCACAAGCCTTATA CATAAGTGTGAGCAAACTAATTGAGTGACCTTGCAGAATGTCATGTCTAGATGAAAATCAGTGACTGACTGACGTATCCA AATACAGCCTACGCATGCCCTACAGGGTTAGCTATCCAGCAACACACACAGTCACACACCTTAACCTTGTCAAATCCTTT CCACTGTTCCTTCACTTGGCAGACTCACACACATGACACACATCCACATTCCCAAAAATCTTAGATAGAGTAGATAGATA CACAAGTGCACGCATATTCACACACACACACCATAACTCTCTTTCACTGTTCACTCTTTCCTCTCTCATCTGTCTGCTCC TGCTTTCCTTTCTTCCAAGCTTTCTTGGAAAAGAAAAGCCACCAGGTCTTGTCTCTTTCCAGGTGCCCTCAACTTTCCAT TCCTAGCTTCTCCTCCAAAGACTAAAAAATTTCACAAGTTTATAGAGTCTCATCTCTCAGCAGAAACTTAGATGGATGAA TAAACTGAGGACTTGCTTGGTTGATTCAACTTGTTGTGATGGAAGATATTTACAGGATGAACCCTTTTCTATCTAGTCCA CAAGATCATGTTGTTGCCACTGCTGGTTCTTCTCAACTGCATCTAGGCCTTGTGGCTAGTAACTACCTTCAGATGGAAGA GCCTGAACCGGGTTTGACCGGGTCAGAAATGTCGGATCGGTTGATCAAGAGCCAGATCGCCTCTCACCCTCTTTATCCAA ATCTTGTTTCTGCTTACATCGAATGCCAAAAGGTTATTATATACTTATGTATATATTTTGATAAAGTTTATGCTTTAACC ATGAACCATAAGTATTAAGGAAAACAAGCAAGTAAAATATTAGTATTATAACATTCAATTCCTATATGTGAATATAAATA GTACTAGCTTGTTGTGTTCAAAGGTTGGAGCACCGACAGAACTAGCTTCCTTTCTTGAAGAAATAGCCCGTGAGAACCAC AATAGTTCTAATGGTTTCGGCCGTGAGATAGGAGATGATCCAGAACTTGATGAATTCATGGTACTTTTTTTTTTGTGATC ACAAACTTAAATTTCTTTGTACTGTTATGTGAATGAAAAATTGATATATAGTTTGTTGGTGTTAATTAGGAATCATACTG CGAAGTTCTTCAGAGATACCAACAGGAGTTGTTCAAACCCTTCAATGAAGCAACCTTGTTTTTGTGTGATATTGAATCAC AGTTAAGTGAGCTTTGTAAAGGAACACTAACAATGCCATCAGATAACAACCGGTCAGGTATGAATCTCCAACATTAATCT TGATTATTCTCTAACTATGGTGTGTGAAAACTCTAGATATATTGTTTTAAATTATATATGGACGGAGGAAGCTGTATTCT CTCTCTTTTTATTACTATTATTATTATTATTATTATTATTATATTATTATTATTGTATTAGTATTTTGTTTTTAGCTGAA GAAAAGAATGGCCCCCCTCATCTCTGTACGTTTTAGATGAAGACGATTTAGTATTCTTTAATTAAATCTTTACATGGAGG CCCACGAGCGACCATATGATCAGACCGGTTAACAGAACCTTCATGAAATAAAATTTTCAGACAGTGCTGTAGTTTGGTTT TTTCTTATCTTGTATATTAGTTATCTGTGGTCTGTAAAAAACTCAACACTGATACACACATTCAACTGCATACTAGAAAA AACAAAAAATAGGTCCCCTATAAAGTGAGAGCAAATTAGGAATGACAATTTTGCCCAAACCCATGGGTACCCGCCCGAAC CCGATTTGACGGGCAAAATCCGAGTTGACTGGATTTGAGTTTGGGTTTGGGTTTTGCCCGTTACTGTAGCCATTTATGGG TTTGGATTTGGTATTAGTTAAATCCGTGTACATACCCGCCCAAACCCGAACCCAAAGATACCCGAAACATAAAATTACAA AAAAACCCTCATACATATATATATTTATAAACTTTGTTCTTAGTGTTTGATGATTAATTGTACTTTTGTATGTTTGAGAA AGTAAACTTTAAACTATTGTTGTCTCATTTTAGTGATGAACGAGGATGATGAATAGTATTTTTTTTCTTTATATGAATTT CACTTTTTTTTATATGAAAGTAAGTTCTGAATTAAGTTGCTACGTAACTAATGAGTTTGGGTTTGGGTTTCGGGTAAATC CGAAACCCAATGGATTTAGGCATGGATTTCATTTTATCGCCCATAAGGGTTTGTGTTTGGGTTCTGGGATTTGGGTTTGG GTTTGGTAATTGTAAAACCCGTGCCCGATCCTACCCGTTGCCATCCCTAGAGCAAATTTCAACAAAAAAGGTGAGAGCGG TGTTTATTATGAAATATGAATCCATTAAATCGTGACCGCAAGTATTCTTACATTTTTCGCGTTTTAATCTTATAACCGTT CATGATTAGACTATTTAATGGTCAAGATTTAATGCTCTTATCTCTTATAATAAACACTCCTCTAGCTAGATATGCTCCCG ATATCGTCATAGCATGGGATGAGATATTGGTATTATAATTCACATATTTAGAAGAAAATAATGTATCTACACCCCAATTC CACACCAAACTAGAGAGACGGAATAAAAGTGAGAGGAGGGAGAGATACAATGAGTTATAGGATGGAAAATGAATAAGAAG ATATTATTCTCAAACATCAATTCATTTTTTTTAAATAAATTGTGTCAATCTTTAGCAGGTTGTTATTATAATCATGGATT TACTTTAGTCTAGTGATAATTAACTCATTGGGTCTTGTTTCCATTAGGAGTGCTCTGTGGATGGAATTGAATTTGAGAAA GAAAGTAATTGGCTCACGCATTAATTTTATTTTATTATTTAGTTAATTTAATCTTTAATTTAAACCAACTATTCAAAAAA ATGTATGTTTCCTTAATTGCTCACTTATAAATGTGTGTTTTAATTTTTATCTACTTGTTCAGAAAACTATAGTTGTTGCT CTATGATAATTTTATAGGGATTTGTCTCCTCAAAATTAAGTTCTTCGATTTAAAGGATGTACAATTATAACAGTTGATTA AAAAAAATAATGTTTTGAGATTATTCATATTAAGTCTTAAGTTACACCCTCTAAATTCACACTAGCTAACTAAAACATTC GATCTGATTAACAAAAAAACGAGGTTTAAATAAGTTTGTAGTCACATTTTACACTAGCTTATCAAATATCCGCCATGGTG GGTTTTTGGTTCTCTGCCATGACCACCACTATCCCATCGTCATTATTTGTTAAATATGGTGGGTTTTTGGCTCTCCGTGC CATCCGCCATTAACAACATTGTTTTACACACAAATTTGGTTTTGGTCCCTACTTATACAAATAAATATGGCTTCCCTCTA CTATTTTACAGTATCACACTATTAGCTAATGGTGTGGCTAATAGAGAGCCATGTTATCTATATGGTCTATGTTGGTGCCG AGTAATACTTTTAATATAAAATTTCATAGAGATCAAAACTCAATAAACTTTCATAGAGTGTAGTTTATTTTTTATGTAAA GAGTTATTGATCTAATTTGGAAGCATTATATGTCACATATGATTACTCTGGATACATGACAATAATAATTCGACCCTTTG TTGGCCACATTTTCATTAGTTATTTTTTTATCAGCCAAATCTTTATTGGACGGTTTTTTTTGTCCTTTGTCAGGTTTGAT CCCAACACCTGCCTGCCTTAGCTCTTACCACTTGAGTTGTCCTTTGGGGGCATTATTAGTTCATATGTAAAAGTAGTAAC CAAAACCAAAAATAGTAGATGATCGGGACCAAAACCAAATCCAGCTGTAAAATGAGGGACTAGACATTTTTTAAGCCCCA TAAGTTTCAGTGAGCCATCTTGATGTAATTATTGTGATCGCTTCTAGCTCTCTAATACTATTAATACCTTTAGATACAAC GAGGTTTTGATCAGTCTATCCATGGAATTATAACTATTGATTACCTTGACCTTGACCAATTGTGTTAAACTTTGCAAATA TTTAGAATATAATGAAATGGCTCTTATTTATGTATGTGTCAAAATAATTTTGGATTAATGCGAAATGTGTTAACATATGC ATGTACTTCTACATCACACAGGATCTGGTAATTAATTTACTTGTTAATTGTAATGATGATGCAGTTGTGTGTATTTTGAA CAAATATCCATATGGATAATTTATCGGTTACAAAATCAAAGTTGAATATTTTCTGCAAGTAGTTTTAAGTATTAGGTCTG GAATGTGTATTCGCCCTAAGTACACATTCTTTGCCCTGTTAACAAATATTGTTGGTAATGCAAGTGTGATGTCTAGAGTT CCACATTTGTTAAGACTGAGTGAGGTGAAGATCATATAAGTGATTTTGTCCATCAACTCAATTTTTTAGGTTTTGGGTAA AGATGTGGCGTCAAATTCTCTTTGTGGTCTTCTTTGTTAGTCCATTGGTGCTGTAGCTTAAATAGAAGTTTGATTATTTT CTAGAGTGTAAGAGCATGTTTGGACATCAGTTGATTGAACTCCAATAGCTCATTTCCCTCATTTTAGAGCAACCAAAGGG ATGGAGTAATAAGATAGAAACGTGTTGGCTCTAGGTTGCATGGTGACAATACACTTCTGCTTACCTTAAAATCTAATGAG GTTTTATATGTTGTTTCTATATGGAGTATATATTTATGAAAGGGACAATCAGCATTTGCTTTTTGTACCTGAAAGCGAAA GAATCATGTTGGATTCTTGCTATAAATGAAAAGAGTTGGTCATAGGTTGGAAATTTTGCTGGGGGGGACCATTTTAATCC AATGCAATGAACAAATGTAAAAAAGAAAGAAAACGAAAGAGCATGACCTGCCTAGTTTGACATGTAATAATTGGTGTATC ATTTCCTGTACTATTGTCACTCAATGATTATAGCTAAACTATTTCTCTGTCTTCAAGTTTGTGATGCAAACTTTGGCTTT TCACCAACAATGTTCTTTGATCTGCACTCCAACTGTATGGGTAAATGCCAGTACTGCCATTATAAACATAACTATCAACT ATCTATTCAATTAGGTGGTCCCCAGAAAACTACATAATCTTAACATACAATGCTTTTTGACAAATGCTGAAATTACTTGT GTTTTCTCTAGGTATGTTTCTATGCTTTAGTCCCCTGGCTTTTCATTTTATCCTTTTGTTCTGTGCACACATTCAAGGTA AACTGAGAAAAAAAAAATTCTAAGTTGACATGCAGTTTGGCCAATCATTCATAATCTCCTAAATTGAAAGTTTAAATCAT TTTTGTCTTGCATAATCTCTTACATTCATAAACTCTTATTTGTTGAAGCATTTTGATTAATCCCTTGTGTGTTGCATTCA GATGAGGCTGCTGGGACATCAGAGGATGAATTGAGTTGTGGGAAGGTGGAAGCGGTGGAATATTCCGGCATGCGTCAGGG GGATCAAGAGCTAAAAGAAATGCTCCTTCGTAAGTATGGCGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAA GGAAAAAGGGTAAGCTACCAAAGGATGCAAGGAAAACGCTTACGGATTGGTGGAACACCCACTATAGGTGGCCTTATCCT ACGGTAATTGAAATTAATATAACATAGTATACTATTATACTGCAATCATTTTATTGTATAATAATGCATTAATATTCATC AGCGCAATGTGGTCAAATTTCAAATATGCCTAATCATGTAGGTACCTTGAATGGACTGGAAACATTCAGGGAATCCTACA TTCGATGAAGTATGCCGTCCTCGGACGACTCATATTTAAAGAGGCAACTGTACACGGACGACTCATTTAAAGAGGCAACC GTACAATAAAAAATCAGCCTCTTTAAATTTGAGCTATCCGACTTGATATAGAGTCCGAACTTCACTGAATTCAGGATTCC ATGATGAAATGAGCTTATGTATGGTGCTTACCTTGTGCACTTTTTTGGCCACAAGTCAATTAATAAATCAAAACCATATA TGTTGCTATTTTGAATAGACAATGCTCATTCTATGCAAAATGCCTTGAATTATTGACAACAGGAGGAAGAGAAATTGCAG CTATCAGAAATGACTGGACTTGATATAAAGCAGATCAACAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATC TGAAGATATGAGATTTGCAATAATGGAGGGTGTAAGTGGTGGCATAATAGGACCTATGTAATTAATTAATTCTGGATGTG GATCGTGATTATTTCTTTAAGTTTCCTGCTACCTGCACTTGTGGAACCTGCACCAATATATATATGACGAGGACATGAGG TGCTCTATTCAGCTTATATACATAACTGTAAAATATTGATCTCCACCATTGATCAATGGTCCCTATTCCCTAAGACCTAA ACCCATTATTTTACGACAATAAGTTACTTTTTTTTTTGTGAGATCAGGATATTCACTGCCGACAACAATGACCAATCTCT TTGCTTTGAGTGTTTGCACTAAACAGTAAATGACTGTCCACAATAAGCGCTTTATTCTGATGGGTGGGCCATGTTACTAT TGATTCTTTATGAATATATACTGTGACAATCAATATGAAGATTATATTGTGACAATCAATATGAAGATTTGGCACGGATA AAGAAATTTTCTTATACGCTACTATAGTGTGTGGTAGCTATTTTGGTGATGTTGCCTATGACCTTGTAAATGCAATGGAG CCAGTCCAAGTAGTATTCACACATTGTTTAAGGATGAGTTTGAAGTCTCATGGTTTAAGGCTTTAAGCTATGTTATCCAA GGTGTACCTTTTTTTTTGTCTCTGTCATCCAACGTGTACTAATAATGTTTCTTATGCAAGTGAGATCGATGTCAATATTT TGAAGTACGGTTTGATGTA
CDS sequence (LotjaGi5g1v0230100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATATTTACAGGATGAACCCTTTTCTATCTAGTCCACAAGATCATGTTGTTGCCACTGCTGGTTCTTCTCAACT GCATCTAGGCCTTGTGGCTAGTAACTACCTTCAGATGGAAGAGCCTGAACCGGGTTTGACCGGGTCAGAAATGTCGGATC GGTTGATCAAGAGCCAGATCGCCTCTCACCCTCTTTATCCAAATCTTGTTTCTGCTTACATCGAATGCCAAAAGGTTGGA GCACCGACAGAACTAGCTTCCTTTCTTGAAGAAATAGCCCGTGAGAACCACAATAGTTCTAATGGTTTCGGCCGTGAGAT AGGAGATGATCCAGAACTTGATGAATTCATGGAATCATACTGCGAAGTTCTTCAGAGATACCAACAGGAGTTGTTCAAAC CCTTCAATGAAGCAACCTTGTTTTTGTGTGATATTGAATCACAGTTAAGTGAGCTTTGTAAAGGAACACTAACAATGCCA TCAGATAACAACCGGTCAGATGAGGCTGCTGGGACATCAGAGGATGAATTGAGTTGTGGGAAGGTGGAAGCGGTGGAATA TTCCGGCATGCGTCAGGGGGATCAAGAGCTAAAAGAAATGCTCCTTCGTAAGTATGGCGGTTATCTTAGCAGCTTGAGAA AGGAATTTCTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGAAAACGCTTACGGATTGGTGGAACACCCAC TATAGGTGGCCTTATCCTACGGAGGAAGAGAAATTGCAGCTATCAGAAATGACTGGACTTGATATAAAGCAGATCAACAA TTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATCTGAAGATATGAGATTTGCAATAATGGAGGGTGTAAGTGGTG GCATAATAGGACCTATGTAA
Protein sequence (LotjaGi5g1v0230100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDIYRMNPFLSSPQDHVVATAGSSQLHLGLVASNYLQMEEPEPGLTGSEMSDRLIKSQIASHPLYPNLVSAYIECQKVG APTELASFLEEIARENHNSSNGFGREIGDDPELDEFMESYCEVLQRYQQELFKPFNEATLFLCDIESQLSELCKGTLTMP SDNNRSDEAAGTSEDELSCGKVEAVEYSGMRQGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLTDWWNTH YRWPYPTEEEKLQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGVSGGIIGPM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 2.1E-125 | – | |
| PANTHER | 1 | 293 | 293 | 2.1E-125 | – | |
| SMART | 54 | 98 | 45 | 3.1E-20 | ||
| Pfam | 56 | 97 | 42 | 6.3E-20 | ||
| SMART | 103 | 154 | 52 | 2.0E-20 | ||
| Pfam | 107 | 153 | 47 | 6.1E-21 | ||
| MobiDBLite | 157 | 177 | 21 | - | – | |
| ProSiteProfiles | 196 | 216 | 21 | 11.366 | ||
| Pfam | 196 | 217 | 22 | 3.3E-10 | ||
| SMART | 196 | 217 | 22 | 5.0E-7 | ||
| Gene3D | 214 | 287 | 74 | 1.8E-23 | – | |
| ProSiteProfiles | 216 | 279 | 64 | 12.6 | ||
| SMART | 218 | 283 | 66 | 1.0E-12 | ||
| SUPERFAMILY | 218 | 288 | 71 | 9.84E-20 | ||
| CDD | 228 | 280 | 53 | 2.97688E-12 | ||
| Pfam | 236 | 275 | 40 | 3.6E-17 | ||
| ProSitePatterns | 254 | 277 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0230100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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