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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243900 |
| Transcript ID | LotjaGi5g1v0243900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7H2S4|A0A1J7H2S4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0243900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55248421..55251303) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTGGGAATTTGAGGTTTCTTACTTCTTATAATATGTTTATTCTAGGGTGTTCTGTGAAGGCTCTTTAAAATTCTGC TAGTGACAGGTTGAATTGTATTTTCCACTCTTTGCTTCTGCTTAAAAATTTTCTCTTTTTTTTTATGGCAATTGATGTTC TTTGTTGTATTGGATATTTATTTTTATCAAGGGGGTGAAGCCTTGCTGTGATTTGCAGGAAATTAAGGAAATCGGCAGAA AGTAAGGTTACTAAAAAATCTCCGGTGAAAGCGGTGTATGGCGATGAATTTTGGACACCTGAGAGGAGTTCAACTCAGGG TATTTGGTCCATGAGGTAGATTTTATTTTGTTATTTGTTTTATCATTTAGCTTTGTTGGTTAGGAATAGATTTTTAGGTG CCAACAAGCTTATTCTTATTTATCTGACTTGGGTTTTCTTTAAGGAATGATTTGCAAGTCCCATCTTCCCCTTATTTTCC TGCTTATGCACAAGGACAAGGGCCACCCCCAATGGTGCAGGAGCGATTCATGAGTGTTATAAGTCAGCTTTTCCAATATG TAGGCATTTTTTACTCTTGCTGTTACTTAAGGTTGAGCATTCAGCTTGTTTTTATCTTTCAAGTGTTGATAATGTGTTTT GGTATTTAGAGAATCATCCGTTGTGGTGGAGCAGTTGATGATGATATGGCAAACATCATAGTTGCTCAGCTCCTTTACCT CGATGCTGTTGATCCTAACAAGGTGTGTTCAAACTCATGACTTCTCTTATATGTTTGTCTATATGAAGTGATCCTTTGCA TTCCTGGACATGTCTTCAAATGCTTATATTGCTGTATTTTTTTCACTATGTTATGATTATTGTCTTGAATTTGTCTTTAA TCTTTTCAACTGTGTTAAACTAAAAAATTGTTGTGACTGCCACTTTTCTGATTTTGTTGAACAGGATATTGTCATGTATG TAAATTCTCCAGGAGGATCGGTTACAGCTGGTAAGATTTTTTTTATGTATCTATCTTGAATTATTTTTATTACATACAAC CTGCACTAGGACTCAAAAAAAATATTATTCTTTTTTAAAATGTGTTTTTTATTATTTTTTCATAGGTATGGCAATATTCG ATACAATGAGGCATATCCGACCTGATGTGTCCACTGTTTGTGTTGGATTAGCGGCTAGGTAATGCTTCATCTTGCTCTTG ATAACACCTAAATGCTGACAAGTTGCTATCAGTAAAAGGCTAAAGTTTTTTTCCTAACATGATCTTGATGTATGCTCACA GAAAGTTCATTCATTTATTTTTGCTGAATTCTAGGAGAATTAAGATGATTAAGTATTAATTAATTTTAGACCCTCCCTTT GACACAGTACTTTTTCTCTTAAATGAATTTTTTTTGGGTATGATTACATTTCTGTGAATGATGTGCTACATCCATGGGTT ACCGCTGACTTCAGGAATAGCCAAATGTGAATCTAGAGAACAAATTGGTCCCCTCTTATCTTAACTGCTGTAGTTCATTT TAGAAAATCTTCTCCACTGGTAATTGTCATGTTGTGGACAATATCGTTTTTTCCAGTTTCATGTTGGTCCCTAGATAGCA TTGCAGAAGTAATGTAAGGACTGTTGACTGTAATATTAACTAAGAACTTTTGAACTAAAAACTTGGTAGCTTCTTAGGCT ATGCCTTTTCATGCTCTGGATTTGAGTTCCACCTTTGACCTGGTAGTCCGGCACTTCTCAACAGCTAAACTAAAGTCAGA GACTGTATTTTCAGAGATACCATTATTAAAAATTTGAGATAGAATTTGCACTTGTGACATTTGCTGATGATATATGCATT GAACAGTTTGAAGAACTTAAAATCTCCAATTCTCCATTAATTCACAATATGACACTGAAAGATGATTAATTTGTATGCTA GTTTCTTTTAAAAAAAAATTGTTGAAGAAATTATGTTTCACATTCATACTTACAAAGACCTTTTCATGAGCAGTATGGGA GCTTTTTTGCTTAGCGCAGGGACCAAAGGTAATGATGATTCCTTAAACTTGCAGTCACTATCCATTTTTTTTTTCTCTTT TCTTTCTTTCTTCTTTTGGCGAATGTCATTTTCCACTTTTCTGAAAAAGAAATTCTTCTTTCTAACTCTATATCCCCACT ACCTCACTTCTGAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTATGATCCATCAACCGCTTGGTGGTGCTCAAGGA GGGCAAACTGACATAGATATTCAGGTTTAGGTTCCCTTTTTCTCCCTTTTGTTCTTGTTTACTTTGAAAAAATTATATTC TTTTATCATAGAAAATTAAAACCTGTCATCGGATATTACTCAGTCCAATAAATTGATTTAAACCAAGAAGATGGTAAATT CCCTGATAACCTAAATCTATGAATAAAATATCTCTAGCAATTTCCTTATATTCCTTTGTTTTGTCCTTTTTATATTTCAT TTTCTATTATTATGTGTTGGGCTTTGGTTTGTTTTTGTCTGGATTTGATCAGATATTTTCAGTTAGTTGATTTTGAACCC CATTATAATGGGTGATAATTTCTCTATGGACAAGTATCATAAATTTGTGATTCTCTTCGTAACCCTGTTACAGAAAATTA ATTATGGTTTGTAATCCTTAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGATATCTGTCCTATCATACTGG CCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATGAGCGCAAAAGAAGCCAAAGAATATGGACTCA TAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGCCGGCTGCAGAGGAGGGAAAAGATCGGGCTGTTGTT TGA
CDS sequence (LotjaGi5g1v0243900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAATGATTTGCAAGTCCCATCTTCCCCTTATTTTCCTGCTTATGCACAAGGACAAGGGCCACCCCCAATGGTGCA GGAGCGATTCATGAGTGTTATAAGTCAGCTTTTCCAATATAGAATCATCCGTTGTGGTGGAGCAGTTGATGATGATATGG CAAACATCATAGTTGCTCAGCTCCTTTACCTCGATGCTGTTGATCCTAACAAGGATATTGTCATGTATGTAAATTCTCCA GGAGGATCGGTTACAGCTGGTATGGCAATATTCGATACAATGAGGCATATCCGACCTGATGTGTCCACTGTTTGTGTTGG ATTAGCGGCTAGTATGGGAGCTTTTTTGCTTAGCGCAGGGACCAAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTA TGATCCATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCATAAG GCAAACCTGAATGGATATCTGTCCTATCATACTGGCCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTT CATGAGCGCAAAAGAAGCCAAAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGC CGGCTGCAGAGGAGGGAAAAGATCGGGCTGTTGTTTGA
Protein sequence (LotjaGi5g1v0243900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNDLQVPSSPYFPAYAQGQGPPPMVQERFMSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSP GGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHK ANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLPAAEEGKDRAVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 9 | 206 | 198 | 39.402 | ||
| PANTHER | 16 | 219 | 204 | 1.4E-150 | ||
| PANTHER | 16 | 219 | 204 | 1.4E-150 | – | |
| Gene3D | 17 | 207 | 191 | 2.5E-70 | – | |
| SUPERFAMILY | 27 | 203 | 177 | 2.05E-66 | ||
| Pfam | 27 | 205 | 179 | 1.3E-80 | ||
| PRINTS | 32 | 47 | 16 | 4.4E-48 | ||
| CDD | 33 | 202 | 170 | 1.48851E-107 | ||
| PRINTS | 72 | 92 | 21 | 4.4E-48 | ||
| PRINTS | 103 | 120 | 18 | 4.4E-48 | ||
| ProSitePatterns | 103 | 114 | 12 | - | ||
| PRINTS | 124 | 143 | 20 | 4.4E-48 | ||
| ProSitePatterns | 125 | 138 | 14 | - | ||
| PRINTS | 181 | 200 | 20 | 4.4E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0243900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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