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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0309600 |
| Transcript ID | LotjaGi5g1v0309600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disrupted meiotic cDNA 1 protein; TAIR: AT3G22880.2 DNA repair (Rad51) family protein; Swiss-Prot: sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog; TrEMBL-Plants: tr|A0A151U6N0|A0A151U6N0_CAJCA Meiotic recombination protein DMC1 isogeny; Found in the gene: LotjaGi5g1v0309600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62779756..62782650) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGCGACGCTGAAGTAAGCCACAGCTTCTTCATCCACTCTCTTCTCCGTCTCGCAGTTTCAATTCTACCTCAGTTT CTGATCGGCGATGAATGACTTTTGTGTAACCTTGCTCTCTTTTTCAGATCTGAAGACTCCAGCGGCCAGTTGCAGCTCGT TGAACGTGAAGACATCGACGATGAAGATGACCTCTTCGAAGCCATCGACAAACGTAACTTCTTCTCTCAGCTTCGTTTTC TTCCGTTGCTTTTCTAGATCTATTTACCAGAAACCGATCTCTGTAATTCGATCGTAAATTCTTCGTTCTGAACTGTTTTT GTCTTCATTTTCAATTTCCCTGCTATGCGCTAAGAGATTTCGTCAGATGCACTATTTCACTGAGAAAATCACTTGCAATT ACGAAATCTTCATCCTCACCTGTACTTGTTTACATTCTCTCTGGTTTTTGTTGAAATTTTGACTATACACTCTGTTTCAT CGAATACCGAGTTAGTTTGCAAAGCACAATTATGTCATCGTTTGATTATTTGAAAACGGAAATTGTATTGTCATTGATTG ATTCACGAGAATTTGCTTCTTCACAGTGATTTCTCAAGGCATTAATGCCGGAGATGTGAAGAAGCTTCAGGACGCAGGAA TATACACCTGCAATGGCTTGATGATGCACACAAAGAAGGTTTAGTTTTAAACACAGATCTGCTTGACTTAGAATTTCTCT GCAGTTCTATGACTATCTAACTTAATTTTGCTGCATGTTCGTAGAACTTGACTGGAATCAAAGGTCTATCTGAGGCCAAG GTTGATAAGATCTGTGAAGCTGCTGAGAAGATTGTGGTTAGTGATCGTAATATCTGGTTTCTAAGTTGCTTCAGAATACT GTTTCAGTTCCTTGTTTATAATTCGATCTTCGTTTCTATTTTCTCCTTTTGCGATGCAGAGTTTTGGTTATATGACCGGA AGTGATGCATTGCTGAAAGTATGTCGTTTATTTTGCTTGGAAATTTTGAAATATGGACTAGATCTGCATATCTCTAACAT TTTGGTGGTTTTGTTAAGCGTAAGAGCATTTGTGATCCGAATTAATTGTAATCTGTTAATGCAGAGAAAATCTGTGATCC GAATTACCACTGGAAGCCAAGCTCTTGATGAATTGCTTGGAGGTTGATTTACGCTGAGATTTTTCTTTTCTTATGTAGAC TTGTGTTTTACTGATCGTATGACTCGTTCATTTTGACTGTGTTATGCTCCTCTTTGAATTGCTCTTTCTGATATTTGAAA TAGGTGGGATCGAGACAACTTCGATTACTGAAGCGTTTGGAGAATTCCGGTGAGAACATAGCACATATCTGGTTTCAGAA TTCAGATAAATTCAATTCATACTCAGTTTCTGAAAAAGTTCATCCTAATGATATGATTTTTTTGTTGCAGATCTGGGAAA ACACAGCTTGCTCACACTCTCTGTGTTTCCACTCAGGTTTACTTCTATTAGGTGTTGTTAATTAGTATTTGTTAATTGTC ATTGAACCTGTTCTCTCAAGCTATCTACTGTATTAGAGTGGGTGAACAGAATGTTGAACTTAGATGAAATGCTAGTGTTT TTCTGAAGCGCCTTGTATCTCTTGTATTGTATCATTGTATGCATTCATAGCTTCTCAGGCACTGAATTTTGTTTATGCGT TTGTCCTGGCCGCATTTTCTCGCCCATTGATATATTTGGTGCATACTACTAACCTCTGATGACCCCTGCAGCTGCCAATT AATATGCGGGGAGGCCATGGAAAAGTTGCATACATTGACACAGAAGGAACTTTGTATGCCTTTTTCCCTTAGCATTATGT AACTTCTAAGAACTTTTGGTTGTGATTGTGCTTTTACTTACTAGTGTTTTGTCTTCATTCTCAAATACCTGTAGCCGACC TGACCGTATTGTCCCCATAGCTGAGAGATTCGGCATGGATCCTGGGGCTGTTCTGGATAATGTAAGTATTTCCTGGATCA TTCAGTTGGGTACTGAAGGGAAATAACTTTGTGCTGAGTTGCTGACTTCTTACCATTGTCTATTTGTGACTGCAAGATTA TCTATGCTCGTGCTTACACTTATGAGCATCAGTACAACCTCCTCCTTGGTTTGGCTGCTAAAATGTCTGAAGAACCATTC AGACTTCTGGTGAGATGTTACTAAAAGAGAACAGAGTTATCTTCCATTGCAATACTATGAGATATGGAGAGTTAACAGAA TTGATATATGGCAGATTGTAGATTCAGTGATTGCTTTGTTTAGGGTGGACTTCTCAGGAAGAGGAGAGCTCGCTGAGCGC CAGGTATATGAATCTGTCATTTAAATGCACTTTACAACAGCTTTTTTCCTTTTCTATATCAATTTTTGCTGATATGAACA ATAACCATTGCAGCAAAAACTGGCACAAATGCTTTCTCGATTGATAAAGATAGCTGAGGAATTCAATGTTGCAGTTTACA TGACAAATCAAGGTATAAATTCTGCACTTGTGTATGAAACTTCCCCTGTGAACTCTTCCCTCTCAAGTCCTAGTTGATTT TCTAAATGGTTTTGTTTAGAACAATAAGCAGAGGTATTTGATTTTTAGTTATGGCTTTTATAAGACTAATGCTTATCTAC AAATTTTTGTTGTTGTTTTGGTTGCAGTCATCTCTGATCCAGGAGGTGGAGTATTTGTGACTGATCCAAAGAAACCAGCA GGAGGGCATGTGCTAGCCCATGCGGCCACAATAAGGCTGATGTTTAGGAAAGGGAAAGGGGAGCAGCGCATTTGCAAAGT GTTTGATGCCCCAAATCTGCCAGAGGCTGAAGCAATATCCTTTATCAGACTTTGCCCCTTTAAAATAATCTGCTAGTTGA TCAAAAAGACTTTAG
CDS sequence (LotjaGi5g1v0309600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCGACGCTGAAATCTGAAGACTCCAGCGGCCAGTTGCAGCTCGTTGAACGTGAAGACATCGACGATGAAGATGA CCTCTTCGAAGCCATCGACAAACTGATTTCTCAAGGCATTAATGCCGGAGATGTGAAGAAGCTTCAGGACGCAGGAATAT ACACCTGCAATGGCTTGATGATGCACACAAAGAAGAACTTGACTGGAATCAAAGGTCTATCTGAGGCCAAGGTTGATAAG ATCTGTGAAGCTGCTGAGAAGATTGTGAGTTTTGGTTATATGACCGGAAGTGATGCATTGCTGAAAAGAAAATCTGTGAT CCGAATTACCACTGGAAGCCAAGCTCTTGATGAATTGCTTGGAGGTGGGATCGAGACAACTTCGATTACTGAAGCGTTTG GAGAATTCCGATCTGGGAAAACACAGCTTGCTCACACTCTCTGTGTTTCCACTCAGCTGCCAATTAATATGCGGGGAGGC CATGGAAAAGTTGCATACATTGACACAGAAGGAACTTTCCGACCTGACCGTATTGTCCCCATAGCTGAGAGATTCGGCAT GGATCCTGGGGCTGTTCTGGATAATATTATCTATGCTCGTGCTTACACTTATGAGCATCAGTACAACCTCCTCCTTGGTT TGGCTGCTAAAATGTCTGAAGAACCATTCAGACTTCTGATTGTAGATTCAGTGATTGCTTTGTTTAGGGTGGACTTCTCA GGAAGAGGAGAGCTCGCTGAGCGCCAGCAAAAACTGGCACAAATGCTTTCTCGATTGATAAAGATAGCTGAGGAATTCAA TGTTGCAGTTTACATGACAAATCAAGTCATCTCTGATCCAGGAGGTGGAGTATTTGTGACTGATCCAAAGAAACCAGCAG GAGGGCATGTGCTAGCCCATGCGGCCACAATAAGGCTGATGTTTAGGAAAGGGAAAGGGGAGCAGCGCATTTGCAAAGTG TTTGATGCCCCAAATCTGCCAGAGGCTGAAGCAATATCCTTTATCAGACTTTGCCCCTTTAAAATAATCTGCTAG
Protein sequence (LotjaGi5g1v0309600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLATLKSEDSSGQLQLVEREDIDDEDDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDK ICEAAEKIVSFGYMTGSDALLKRKSVIRITTGSQALDELLGGGIETTSITEAFGEFRSGKTQLAHTLCVSTQLPINMRGG HGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFS GRGELAERQQKLAQMLSRLIKIAEEFNVAVYMTNQVISDPGGGVFVTDPKKPAGGHVLAHAATIRLMFRKGKGEQRICKV FDAPNLPEAEAISFIRLCPFKIIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 19 | 337 | 319 | 5.7E-131 | ||
| PANTHER | 22 | 335 | 314 | 1.1E-154 | – | |
| PANTHER | 22 | 335 | 314 | 1.1E-154 | – | |
| SUPERFAMILY | 25 | 91 | 67 | 2.2E-13 | ||
| Gene3D | 28 | 95 | 68 | 1.7E-27 | – | |
| TIGRFAM | 32 | 333 | 302 | 3.2E-161 | ||
| Pfam | 92 | 335 | 244 | 2.3E-111 | ||
| Gene3D | 96 | 342 | 247 | 1.8E-79 | – | |
| ProSiteProfiles | 105 | 276 | 172 | 45.416 | ||
| SUPERFAMILY | 106 | 331 | 226 | 3.36E-53 | ||
| CDD | 109 | 331 | 223 | 1.25796E-129 | ||
| SMART | 126 | 312 | 187 | 0.0089 | ||
| ProSiteProfiles | 282 | 331 | 50 | 15.512 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Recombinase activity | Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Reciprocal meiotic recombination | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of LotjaGi5g1v0309600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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