Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0343900 |
| Transcript ID | LotjaGi5g1v0343900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|G7II11|G7II11_MEDTR Coatomer subunit delta-like protein; Found in the gene: LotjaGi5g1v0343900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66092734..66098168) extracted from Lotus japonicus Gifu genome v1.2.
AAGGAAGTAAACAAAACGGCATCGTATTATGCTGTGGTGAGATCAACCCCGCGTTTCCTTACATTTCGAGCCTTCTCTTG TTCACAGTGATCCAATTCTCTTCTCAGATCTCACTCTCGTTCGTTCTGGTACACCATTTCTCTTCTCCGATCCCAATTTC ATCGTTTTCTCCTTCTTCATCATCATCTTCTTCATCTTCTCTCTGCAACTTCACCATTCATTTGCATCACATTGCATACC TAACAACTGGATCTGATAGACTCTGTTTTGTTTTTTGCAGATTCAATTCGATTAAGAAGCATTTTCGTGATTTCAAAGAT CAAAGGGAAAGATGGTAACGTTCTCTTTTTTCGCTCCGCAATTCAATACTTCAGCGCTTGCTCAGTTGTTTGTTTTGGTT AACTGTAATCTTAATCTGTGATCTAGAATTACGGATAGAAGGATCTGCATTGTATATCTTGATCTGTTTTGAATTTGATA TTGAAATTCATGCATAATTTTGGATCATTTCTGGGATAGCTTTGATTTGTTCTTCACCTCAATTTTAGCTGCGTGTCATT GAAATTTCAATATAATCTAAAATTAGGGTCGAATTTGATTGCATGAATGATTTGCTTGCCGAATTCCAGTTGGGTGTAGG CGAGCTCAAATGGCGAGGGTAGGGTGGGGTTCGAACTGAGGTCATAGGCTGGTTCCCTTTTGTAAACTGAAATAACAAAG TGTAGATTTAGGCTTAGGAAAAATAAGAATTCACTTCTGATTGGGAATGATGTATTCTTCTAATTTCTACATGTTCTTGA CTTCCCTTATGCTGCATTAAGTTTTTGTTTTATTTGTCAAACAGGTTTGCCTTGCTGCATCCATTATCAGCAAATCTGGC AAAGGTGAGCCTCTGACTCTTTCCGTCCTTGTTTCTGGGATGATTTACTCTGATATTGTCTGTAGCTTGCCTCCTATTTT TTGTCATAGTATTGTACTTCGGTAAATGGCCTTTCCAGCGAAGGGTAGAGAACATTATATATATTGCATTCAAGGTTCAT TTATTTTTTAGTTAATTATAACTAGAGTCTGGACATGTACTCATCTCTCTTTATGTCATTTGAATTTGAATTTTGAACAA CTATAACCTGTAACAATGAAACATATACTTCATGATTAAGAAAAAACAAAATTGAAACACCTACCCCTCTTTGCTATTCG GTTGAAACTTGAAACAATAGCTGACTTCTCCCTTCTCAGCAATATGAAATAACGTGCTACATGACTTTGGGAAATATAAG ATGTATAAGACCTACCCCTCATTGCTCTTATGCTGACAAACCTTTTCCTTTGTTTGCAGTCCTAGTTTCTAGACAGTTTG TGGAAATGTCCCGTATAAGAATTGAGGGTCTTCTTGCTGCGTTTCCCAAGTTGGTAGGTACTGGGAAACAACACACATAT GTTGAGACTGAGAATGTGCGCTATGTTTATCAGCCCATTGAAGCACTGTACCTGCTTCTTGTAACGAACAAACAGAGCAA CATACTTGAAGATCTGGAAACTCTGAGGCTTCTATCTAAACTTGTATCCTTTTCCTCATGCTTTACATTTGACGGTGTTG TTCTCTAGTCCATTTGTTTTCAATTGCTTGGTGTTTTCATGTGGTTATGGGGATTCTAGGTTTTGTGGCTTTATGCCCCG TGCTCAGAATGTGTTCTATACCTTGTTTACTTATTTTCCTTTCATATTGCAATTTTCATGGTATTTTAATGGTACAATTA GTTTCTCTTCTTAGTTTGAAAACATGGGATTTATTGCATAGATTTTTATAGGAAGATTTGTGAGGGGTTAGGATTGATTG ATTGATCAAATTGTTTATAGTGGGAGTTATTTTAGCTTTTATTGGTAGTTTTAGAGCCATTCAATAAAACTTTTGCAAAA TGTTGTGCTTATGGTTAGTTCATACCTTAACATTATTAGGTGCCAGAGTATTCTTACTCTCTTGATGAGGAGGGTATTTG CAGACATGCATTTGAGCTGATTTTTGCATTTGATGAAGTAATCGCTCTTGGGCACACGGAAAATGTGACTGTTGCTCAAG TTAAGCAATACTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTCATGCAGAGCAAGATCAATGATACTAAG GATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTATGATTGGAGGGAGTAATTTTTATTGATTCATTTAC ATTTAACTCTGGTACTGTACTCATTTATTCAATCAATGCTTGTATTTTACAGATTGAGAAGAGAGGCGATAAAGGAGGAT TCGGTCCATTACAGTCAATGGGCTCAGGAAGAGTTGAAAATAGCTTTAGTGATATGAGCATATCTAGCAGTGGAACTGGG TTTGGAAGTGGCTCTGGTTTTGGATTGACTACTGATCCCGATTCCTTTTCTACCAAGCCTAAAGGTTAGCTTTCATAGTT TTTCATGAATTCTTCTGGAGTGCTTATAAATGCATTCACTTAAACGACAGTAAAGCATGGATTCTAAATAAAGAGTAATA TTTTCTTTTATGGATTCTCCCATTCTTTTCTGTAGGTCGTCCAACTTCATCTGCCACAGCTCCGCCAAAGGGCCTTGGAA TGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCATTGTTGAAGATGTT CAGCCAAAACTTAGCCAGTCTCGGTCAGCTGCCCCACCACTTACTGATCCCATCACTTTAACTGTTGAGGAGAAACTAAA TGTGACATTGAAACGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTCTCCAAATTCTTAACCAAGAGG ATGGGAACATTCAAGTTCAGGTATTGCATTCTCATTTTCCCTTCCTTGCTCGTGTGTCCTCTGGGCTACTGATTTGCATA ATCTAAGTTATTTTTTGAATAATTAATCATTCATTGACATGAAAATTGACAATTATTTCTTTAAATCTCATCAGCATTTG GAGAAAGAAGTTCATGTGAAACAGATTTCTTTTCCCTGCTTAATTTCTTTAGTTTTGTCATCTTGTCAATGTTTTTACCC CTGATACTCTCCTCTCATGGTTTATATCTATTTTGGAAAAACAATTAACTATTTCTCTTACAGATGATTTTAAAACGCAG CCTATATTTAAGATCCTAGGCTCAAATGAGTCAATTATTAGTTTTATCTAGATATTTTATTGGAGGCATCGATGTTATGC TCAAGCTGAGATTTTTATTTTTCTGTTTGATCAGTTTTATTGGTTTTCTTTCTCTACATTTTTCAAATATTTTGTGTGTT ACCTAAAGTTGCTCCTACAGGTCTGATCCTATCATCCTTCATTCTTAGGTGCTCTTAGCCTCCCCTCCCTTCTAGACTGG TTTTGAATGCAAATATCACCTTGGCAGACAATTAACAGTATTGGTTCGCATACTGTGCCTTGTTTTTGCAGGTCCAGACT GGTGACAATCAAGCCATCTCTTTCAAGACTCACCCTAACATGAACAAAGAATTATTTGCCAATGAAAACATACTAGGCCT AAAGGATCCAAACAGGCCTTTCCCCACTGGTCAAGCCAGTGATGCTGGAGGTGTCGGTCTTCTAAAGTGGAGAATGCAAA GCACTGATGAGTCAATGGTGCCACTGACAAGTGGGTTTATAACTATCATTGATGTGTTCTACTTCTATAACTTGGTTTTC ATGCCTTCATAACTTACTGTGTGCTATATATGTCTATTGCAGTCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTAT GTCAGCATCGAATATGAGGCTTCATCAATGTTTGATCTGCGGAATGTTGTGATCTCAGTACCTCTTCCAGCTCTTCGAGA TGCACCATCTGTCTCACAGATTGATGGAGAGTGGAGGTATGGATTCCCCCCCCCCCCTTTCTCCCCTTTCTCTGAGCTAA TAATAGGACATCCATGATTAGTGTGCTGTGGTAAAGCTTGCAGTGAGTGAGCTGGTGGTTTTGTATGCAAAATTATTTCT GTTACACGCTAGTGGTTTGCAATCTTTTTTAAGTGTTCAGTCTCCTAACAAGTTGCCAGATTTGCATGAATATGAAAGTT CTATGAAGCCCATTATTTCTTCAGATCATTAGTTGATCATTTCAATCATTTATATTTTACTTATGATTCTCAATCATTTT ATCCTACATTACGTTTTTGCTTGCTTCATAGTATTAAAATTGGCTTTGCAGGTATGACCCTAGGAATTCCATTTTGGAGT GGTCTGTCCTTCTGATTGATAATTCAAATCGCAGGTTTGCTAATTTTGGAGTATTTTAATTATAAACTTGTGCTGTATTA TTATCTTTGTATTTTTGGACTTATTTTGTCTGACTTAAATATATTTGGCAGTGGGTCGATGGAGTTTGTTGTTCCTCAAG CGGACTCATCTGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGACCTGAAGGTTTGTATTTTA TACTTTTGGCATTAGAATTTAATTGTGACAGTGGATGCATGGTACTGCTATTTGGTTCAAAACGTTCTAGTTGAAACTAA CATTTATTGACCTGAAGAATGTTATTTTATTTTTATTTTTATTTTTTATGGCTGGAAGTCTTATATTATGTCTGAATATA AAGTACCTTTCTATTCAATTCATTTACCTGCATCGATGAAATCTTTAATTTTCATATTGTGTATCCCTAGAATATTATTT TATTTAATGGGAGCTTAAACATGCCCTTTTTTCTTTCTCTTTGCAGGTGACAAACATCATACCACTAAAGGGTGGTAATC CTCCCAAGCATGCTCAGAGAACACAGTTGATTACGGAAAACTACCAAGTTGCGTGATTGATTTTACTCTCTGCTCTGAGC TTCTATGGCAGTTTTGCTTTTACAGTGGCGGTTCTTTTACCAGTTACCTTTTTCTTTGGCAAGTTGCATCATTTGTTACT TGTCATGAATTTATGCTTTAGTTTTACTTCACAGAACATGTTATGCTCTGTGGCCTGAAATTATGATGCTTGAGAGGTCA CGATTTGTATGTGGCAGTATTGTCAAATTCCAAGCTCCCATGTATGTATGATCATTTGACCATTATGGTACACATTTGAT TGGTTGCAGGGTTAGAAGCAGATAAGTGGCAAATTTTCACAAATTAAAAATCAATAGTGGCTAATTGAAAGAGCAAATAT AAAATATTTTAAGGGAGTAATTAGTCATTGAAATACTATTAAGATTTTTTTTTTCTCTTGGGGTCCCATTGCCCCATAGA CTCCATAGTTCTCGTATTCTTTTGAGGCCATTTCCTTACTCTTTTGAGGCCAGTTCCAGACGGTTTTAAAGGGAG
CDS sequence (LotjaGi5g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTGCCTTGCTGCATCCATTATCAGCAAATCTGGCAAAGTCCTAGTTTCTAGACAGTTTGTGGAAATGTCCCGTAT AAGAATTGAGGGTCTTCTTGCTGCGTTTCCCAAGTTGGTAGGTACTGGGAAACAACACACATATGTTGAGACTGAGAATG TGCGCTATGTTTATCAGCCCATTGAAGCACTGTACCTGCTTCTTGTAACGAACAAACAGAGCAACATACTTGAAGATCTG GAAACTCTGAGGCTTCTATCTAAACTTGTGCCAGAGTATTCTTACTCTCTTGATGAGGAGGGTATTTGCAGACATGCATT TGAGCTGATTTTTGCATTTGATGAAGTAATCGCTCTTGGGCACACGGAAAATGTGACTGTTGCTCAAGTTAAGCAATACT GTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTCATGCAGAGCAAGATCAATGATACTAAGGATGTTATGAAG CGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAGAAGAGAGGCGATAAAGGAGGATTCGGTCCATTACAGTCAATGGG CTCAGGAAGAGTTGAAAATAGCTTTAGTGATATGAGCATATCTAGCAGTGGAACTGGGTTTGGAAGTGGCTCTGGTTTTG GATTGACTACTGATCCCGATTCCTTTTCTACCAAGCCTAAAGGTCGTCCAACTTCATCTGCCACAGCTCCGCCAAAGGGC CTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCATTGTTGA AGATGTTCAGCCAAAACTTAGCCAGTCTCGGTCAGCTGCCCCACCACTTACTGATCCCATCACTTTAACTGTTGAGGAGA AACTAAATGTGACATTGAAACGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTCTCCAAATTCTTAAC CAAGAGGATGGGAACATTCAAGTTCAGGTCCAGACTGGTGACAATCAAGCCATCTCTTTCAAGACTCACCCTAACATGAA CAAAGAATTATTTGCCAATGAAAACATACTAGGCCTAAAGGATCCAAACAGGCCTTTCCCCACTGGTCAAGCCAGTGATG CTGGAGGTGTCGGTCTTCTAAAGTGGAGAATGCAAAGCACTGATGAGTCAATGGTGCCACTGACAATCAACTGCTGGCCC TCTTCTTCTGGAAATGAAACTTATGTCAGCATCGAATATGAGGCTTCATCAATGTTTGATCTGCGGAATGTTGTGATCTC AGTACCTCTTCCAGCTCTTCGAGATGCACCATCTGTCTCACAGATTGATGGAGAGTGGAGGTATGACCCTAGGAATTCCA TTTTGGAGTGGTCTGTCCTTCTGATTGATAATTCAAATCGCAGTGGGTCGATGGAGTTTGTTGTTCCTCAAGCGGACTCA TCTGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGACCTGAAGGTGACAAACATCATACCACT AAAGGGTGGTAATCCTCCCAAGCATGCTCAGAGAACACAGTTGATTACGGAAAACTACCAAGTTGCGTGA
Protein sequence (LotjaGi5g1v0343900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCLAASIISKSGKVLVSRQFVEMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL ETLRLLSKLVPEYSYSLDEEGICRHAFELIFAFDEVIALGHTENVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMK RKASEIDKSKIEKRGDKGGFGPLQSMGSGRVENSFSDMSISSSGTGFGSGSGFGLTTDPDSFSTKPKGRPTSSATAPPKG LGMKLGKSQRTNQFLESLKAEGEVIVEDVQPKLSQSRSAAPPLTDPITLTVEEKLNVTLKRDGGVSNFDVQGTLSLQILN QEDGNIQVQVQTGDNQAISFKTHPNMNKELFANENILGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCWP SSSGNETYVSIEYEASSMFDLRNVVISVPLPALRDAPSVSQIDGEWRYDPRNSILEWSVLLIDNSNRSGSMEFVVPQADS SAFFPISVRFMATDTFSDLKVTNIIPLKGGNPPKHAQRTQLITENYQVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 528 | 528 | 2.2E-294 | ||
| PANTHER | 1 | 528 | 528 | 2.2E-294 | – | |
| Gene3D | 4 | 154 | 151 | 2.3E-11 | – | |
| CDD | 4 | 133 | 130 | 3.30696E-85 | – | |
| SUPERFAMILY | 5 | 142 | 138 | 3.66E-30 | ||
| MobiDBLite | 171 | 194 | 24 | - | – | |
| MobiDBLite | 207 | 247 | 41 | - | – | |
| MobiDBLite | 207 | 231 | 25 | - | – | |
| Pfam | 283 | 508 | 226 | 2.5E-34 | ||
| ProSiteProfiles | 284 | 529 | 246 | 33.188 | ||
| CDD | 285 | 526 | 242 | 1.82761E-114 | – | |
| SUPERFAMILY | 285 | 526 | 242 | 2.35E-25 | ||
| Gene3D | 287 | 514 | 228 | 1.7E-11 | – | |
| Gene3D | 392 | 491 | 100 | 1.7E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi5g1v0343900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…