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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345200 |
| Transcript ID | LotjaGi5g1v0345200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Diphosphomevalonate decarboxylase; TAIR: AT3G54250.1 GHMP kinase family protein; Swiss-Prot: sp|F4JCU3|MVD2_ARATH Diphosphomevalonate decarboxylase MVD2, peroxisomal; TrEMBL-Plants: tr|A0A1J7IDM5|A0A1J7IDM5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66195030..66200250) extracted from Lotus japonicus Gifu genome v1.2.
TGATCATTTATTGTTTTCTTCTTCATTTTTTATTATTAAACTCGGTGTCCCACGCGCAACTCCTTCAAATTTTTTGTCAC ATTTTTCAATTTACAATTCTTATGCAACTGAACCCTCGTGTAGCACGAGCAACTGAACATCGTGATATAGTTTTGTCCTA ATCACATGTTTAGCAGAGAATATTTCGGGTACCCTTTGAATTTGGAACCTGAAAAAGAGGTGTTTTATTAAGCCACAGAT TTATTTCACTTTCCATTTCATGCTACTACTACTACTATTGTTATTAATAGCCTCTTCTTCCTTCTTCTTCTTCTTCTTCT TCTTCTTCAATCAATCTCTCCTTTCAATTCCATCTCTCAGATCAGATCCAATCCCTCATTATTCCCACCACCCATTTCTT CAATTTCCCGCTGTTTTTGCCGGCATTTGAAATAATCACCGGGAAAAAAAACTGATTCAGATTTCTGCCAAACAGTGAAT AGAATAGTAGTAACCTGCTCTGTATTGGGTTGAGTTTGTGGAGGAGCTGCTTGTGGAAATGGCGGGTGAGTCGCAGAATT GGGTGTTGATGGTGACTGCTCAGACACCCACCAACATTGCTGTCATCAAGTATTGGGGTAAGAGAGATGAAACCCTAATC TTACCCGTCAATGATAGCATCAGTGTTACTCTTGATCCAAATCATCTCTGCACTACCACCACCGTTGCTGTCAGCCCCAC CTTCCACCAAGATCGGATGTGGCTCAATGGCAAGGTAAAGTTTGTTTTTTTACGTGATTTGTATGATTCAATTTTATGAA TGTTTAGTTTCTTTTTCGATTTTTTTTAATGGGGCATCAGGGAATTATTGTTTTCATGTATATCCATTGAAAGTTGTTTT TTTTTAAGAATTGGAAAGCAAAATGTATGCCTTCATGCAGATGAGGAAGTAATGCAGGTGTTTTCAGTTGGGAATTATTG ATTATTCATAGCATGCATGGATCCACTTTTAATCCTGCTATAATCACTTTTCTCTTGGTAAAAGCTATTACTAGTAATTA TTTGCCTGGCTAGGTTTCCAAACACATGTGTTTGGTTAAGCTTTTGGAAATGAATTTTGGATCCAGATTTAATTCTTATA AGAAGCTTCAATTTGTAGCTTTTGAGTAGAAGTGCATTGACTTTTCGGGCCACCACTCAACAAAACACGAATCAGGATAC TCTCATGTGAAAACTCTCTCATGTGCCATCATGAGAAATTTGTGCCTATCTCTCTCTCTTCATATGTATTAAATATGTGA CTGTACCCTTTAAATATTTATGAAGACTGAAGAGAGAGATAGACGGACGCAATGTTTCACTTGACATTGTCATGTCACAT GAGAGGATCCAAATCCACCAAACACACACTTAGTCAGCCATGATACAGTTAGATCGTATTATTTACGTGTGTCCACTACT TGATTGATACTTTCACACTCCTGTAAACTTCCACAGCAATGGCAATGATTATTTCTACATTTTTTTCTATGTAGTATCTA GTTGTTTGAAAGAGTGAAGGGGGAAAAAACAGAGATGTTCTTTGTGTGTGCCAAGATGCTAGCATAAAAAATTGTCATGC TTTTTTCTTTTTCTTTTTTTGATTCTTGGAATTTGATTTTGCTGGTTAGTGTAGGAGATTGCTCTTTCTGGGGGCAGGTT CCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGACGATAAGAAAAAGGGGGTTAAGATCACGAAGGAGG ATTGGGGTAAATTGCACGTGCACATTGCTTCATTCAACAACTTCCCTACTGCAGCTGGACTGGCTTCTTCTGCTGCGGGT TTTGCCTGTCTTGGTAATACACACTTTATTTGAAAAATTTCATTCAATAGATATGACAACAAGGTGGGTTGCATTGCATT AGCGATTACAGGCCAGCACTTGTGCTGTCTTATATTAGTTTGAAAATAACAAAACCTTTTACCCCCTTCAATATAATACA AATAATCAGTTTTCCATACTTATAGCTTATTAGCTTAATATGGATTGCACGGGTCGATCCATCAAATCTGGTTGTGATTG GTTGGCTGCTTTAGCAGCTTTAAGACTTAACCCAAATAGGGCAATGGATTTGGTGATACTTTTAACTGGTTGGTCCAATC TAGTTTCGGAAACCATGGAGAACTTTTTCCTGAACAAAGACACTTATCTGCTGTTGTATCTTTTATGCCTTAGGATTGGG ATTCACAGAGGACTGACCTAATTCTTTGTTCAAGAATTTTTGGAATATTGCATCTCACTTTATATTCTTCATTGCATTAA AGCAAATATCTTCAAATTTTAGTTTTGTTCTGTCTAGTGCAATTGCAATCTAATTCCCATGCTTTCTTATTTTCAATATC TTGGTTCTTGGTGCTATTAATTTTATATTAGGTTTAATATAGTTACGACATGTCATAATGATTCCTCTGTCTTTTTGTGT GTGCAGTTTATGCCCTTGGGAAGCTAATGAATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATTGCAAGGTCTTTCTTT TCTTAATGACTTTAAAGTGTTATGACTTGGTTGCAACATTTTGTATTTTGATAATATGTTGTACCAATTACGGACGGACA TTGTCATATACAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATATGGGGGATTTGTGAAGTGGATTATGGGAAAAGTA AGTTTATTTATTTTACATTTTTTAAGCATTATGTGTATCTAAAAATCCATTTGTAATTTCTACTCATTTGATATTTGTAG GAGGAGAATGGAAGTGATAGTCTAGCAGTTCAACTAGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCTGT GGTATGCTGCACTTTCAGTCTTCATATAATTGAATGGATTAGTTCACTGTTGAGTTTTAACTTTGAACATGTATCAGTAA TAATGGCCTGTTGCGATTATTTCTCGATGCAAAACCCGTAGCTCATGGTTTCTATTTCTCCATTCCTTTCTTCCAAGCTT TGTTGCTGTTGGTTTATTTTGTCATATTCTTAGACTGCTGTTTCTTATTCACTTGATGTCATTGTCTATCTTAAAGAAAC ATACATACATAATATACTAATTTAGAATTTTGTAATTTATCCAAGACATTTCTTGTCGATGAGGTGTTTCCATTTCATCT GAGCACCATGTATCTACACCGTTTTGTATTCTTATATGCCATACTTTGCTCAATATCCCCATCTTATTATTTATTTGTAG GTTAGTTCACGGCAGAAGGAAACTAGTAGCACCTCAGGAATGCGTGAGAGCGTTGAAACAAGTTTGCTTTTACAGCATAG AGCAAAGGTACTTCATCCCTTTCCTTTGTACAAGTTTTGCATCAACCATGTTAGATGAGCATTTCTTTGTATTTTAGTAG AGACCTTCCTAATCTATAATTCCATATAAAGGGGACCCTCCTTGGGGTTTTCCCTAAAATCTTGATATTATGTGCTTTGA AATTTTAAAATGAGGTAGAAAATTATATATTCCAATGCATTTTGTCCACAGTAAGACCCCTACTTTCAGGCAAATTACTA TTTAAAGGGATTGATTTTCCATAGTTTCTCTATCAATTTCAAAGAATTAATGTGAACTAGTATTTTGCTAATTGTTATGC AAACAACTATCTTATAGTAATTTAAGTTATATTAATTTTTACACTTTTGTTGTTTTCTCATTTGGACTGCAATAGGAAGT AGTGCCAAAGCGGATACTGCAGATGGAAGAAGCCATAAGAAATCGTGATTTTGCATCTTTTTCAAAACTGACCTGTACTG ATAGCAACCAGTTTCATGCAGTCTGCTTAGATACATGTCCCCCTATATTTTACATGAATGATACATCCCATAGGTAGGCT CTGGTAACTGTGACATTTAGTTATTACTATTACCTCTGTTATTAGATGATTAGATCACAAGTGTGTCATAATTATTTTCT AATTTATTATTGACGATCCTATTTCACTTCAGGATAATTAGCATCATTGAAAAGTGGAACCGCTCGGAAGAAGCTCCCCA GGTTTGAATTACTTTTGTGGTCACATTCTAATGTCAAAATGTAAATAAGTTTATGCCATAGTGGTCCTACCCAGCTTAAA CATGATTGCCTTAGTGGAGAATAGCTGTGGTTTAAACCAGAAAATCCATAGGATTCTGTTTGAATATTAATGTCTAGTTT TGACTTACAGGTAGCTTATACATTTGATGCGGGGCCAAATGCTGTTCTAATTGCTCGCAATAGGCAAGCTGCGGCCCTTT TGATTCAGAGGCTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAACAGGTGCTCTTTTTGTTTTGTGATTCGTATG CATACTCTTCTAGATTTTTGTCAATCTCTTTGAATTGCATAGTTACCTGCAAAAATTCTCCCCTCCAGTTATATTATTGG TGACAAGTCAATTGCAAAAGATGCTGGGATCAATGGAATTTCTGATGTAGAAGCTTTGCCACCTCCTCCAGAAATTAAAG ACAATATTCCATCACAAAAATACAAGGGGGATGTCAATTACTTCATATGTACCAGACCTGGAAGGGGGCCTGTTTTGCTA TCTGATGAAAATCAAGCTCTTCTCAATGGTGAAAATGGGCTTCCCAAGTGAGTTTAAGGACATATTCCCATGGTTGGTCA ATTCTTCATCAGACTCACCCAGTAGGGCTTCATTAACCTGAAATATTGAGTTTTTTACTACATGACCCTTTCAAGGAAGC ATGTGGTATCATTATTTGTTCATTCCGAGTTTGCAACTTGTGTTTTTTCATATATCTGTAATTCTTATTTCAAATCTTGG TGAAAAATAAGTCTCATTCCTTTCTGTATTGTTGAGCAAAAACTTGAGTTTGCAAGATGTCAGCTTTTTAGGTGAACAAT TTCCCTATTTTTGTTAGTGATATGACCACTGTTCTCATTCACCTCATGGGATGGCCCTCAACTTTTAACATTTTGTTAAA ACATACACAATATAACTAAGGCTAACGACACCGGTGTAAATGAATGTTAGCACATACTTTAAGATAAAAAAAAGCAAAAC ACTTGCCAATTGGGATGAAAGTCGGTTCATGTTATATTGTTATATGCTCAACTAGTATCTAAACCCAAGTAGTCAAACAT AATTCATAATTTGTATTACGC
CDS sequence (LotjaGi5g1v0345200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTGAGTCGCAGAATTGGGTGTTGATGGTGACTGCTCAGACACCCACCAACATTGCTGTCATCAAGTATTGGGG TAAGAGAGATGAAACCCTAATCTTACCCGTCAATGATAGCATCAGTGTTACTCTTGATCCAAATCATCTCTGCACTACCA CCACCGTTGCTGTCAGCCCCACCTTCCACCAAGATCGGATGTGGCTCAATGGCAAGGAGATTGCTCTTTCTGGGGGCAGG TTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGACGATAAGAAAAAGGGGGTTAAGATCACGAAGGA GGATTGGGGTAAATTGCACGTGCACATTGCTTCATTCAACAACTTCCCTACTGCAGCTGGACTGGCTTCTTCTGCTGCGG GTTTTGCCTGTCTTGTTTATGCCCTTGGGAAGCTAATGAATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATTGCAAGG CAAGGATCAGGTAGTGCTTGTCGCAGCTTATATGGGGGATTTGTGAAGTGGATTATGGGAAAAGAGGAGAATGGAAGTGA TAGTCTAGCAGTTCAACTAGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCTGTGGTTAGTTCACGGCAGA AGGAAACTAGTAGCACCTCAGGAATGCGTGAGAGCGTTGAAACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTAGTG CCAAAGCGGATACTGCAGATGGAAGAAGCCATAAGAAATCGTGATTTTGCATCTTTTTCAAAACTGACCTGTACTGATAG CAACCAGTTTCATGCAGTCTGCTTAGATACATGTCCCCCTATATTTTACATGAATGATACATCCCATAGGATAATTAGCA TCATTGAAAAGTGGAACCGCTCGGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCGGGGCCAAATGCTGTTCTAATT GCTCGCAATAGGCAAGCTGCGGCCCTTTTGATTCAGAGGCTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAACAG TTATATTATTGGTGACAAGTCAATTGCAAAAGATGCTGGGATCAATGGAATTTCTGATGTAGAAGCTTTGCCACCTCCTC CAGAAATTAAAGACAATATTCCATCACAAAAATACAAGGGGGATGTCAATTACTTCATATGTACCAGACCTGGAAGGGGG CCTGTTTTGCTATCTGATGAAAATCAAGCTCTTCTCAATGGTGAAAATGGGCTTCCCAAGTGA
Protein sequence (LotjaGi5g1v0345200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGESQNWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPNHLCTTTTVAVSPTFHQDRMWLNGKEIALSGGR FQSCLREIRARACDVDDKKKGVKITKEDWGKLHVHIASFNNFPTAAGLASSAAGFACLVYALGKLMNVKEDESQLSAIAR QGSGSACRSLYGGFVKWIMGKEENGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVV PKRILQMEEAIRNRDFASFSKLTCTDSNQFHAVCLDTCPPIFYMNDTSHRIISIIEKWNRSEEAPQVAYTFDAGPNAVLI ARNRQAAALLIQRLLYYFPPNSDDLNSYIIGDKSIAKDAGINGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRG PVLLSDENQALLNGENGLPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 2.6E-254 | – | |
| PANTHER | 1 | 420 | 420 | 2.6E-254 | – | |
| PIRSF | 4 | 411 | 408 | 6.6E-133 | ||
| SUPERFAMILY | 10 | 196 | 187 | 2.88E-42 | ||
| Gene3D | 13 | 405 | 393 | 7.9E-158 | ||
| TIGRFAM | 13 | 329 | 317 | 6.9E-99 | ||
| Pfam | 115 | 173 | 59 | 1.9E-7 | ||
| Gene3D | 195 | 404 | 210 | 7.9E-158 | ||
| SUPERFAMILY | 202 | 417 | 216 | 3.16E-53 | ||
| Pfam | 204 | 403 | 200 | 2.0E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Diphosphomevalonate decarboxylase activity | Catalysis of the reaction: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + H(+) + isopentenyl diphosphate + phosphate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Isopentenyl diphosphate biosynthetic process, mevalonate pathway | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. |
Expression pattern of LotjaGi5g1v0345200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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