Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350800 |
| Transcript ID | LotjaGi5g1v0350800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66661466..66666939) extracted from Lotus japonicus Gifu genome v1.2.
CAATCAAACAATCAGATAAGCACACAACACTATGACATCCCAATTCAAGAGCATGCTCCATTCCTAGCTCGACAGCCAAC GCCTCCACCATGAAAGCACTGTCATTGCTTTAGCTTTGGGCAACCCTTGAAACTCAATCACCGTCCTTATTCCTAACCAC CGCCGCACATCCCATGCGACCCAGCGTCGGGTTCCAACTACCATCCACCCACCATGCCCGTCCCGCGATCAATGATACTC GTGCTTCTGCAGTCCGGAAGATGATGAGGTTGAAGGTACCAGGTCATTTTTATTATTTTTATAAGAAAAAAAAAATTAAT CATTTTTATTGATATACTTATATAAAGTTCCATTAAATAAAAAAATCACAAGATACAAATAAACATTTTCGTTTTCTTCT ACCTCACTCTCCCCCGAACAAACAAACGCTCACCCTCCTCATCACTCACAGACACCACACCAGTCAGTACCTCCGCCGTC CAGATTTCAGATCAGCCAGACCGAGACGCCTTGGATCAGTAAACTCTCTTACCCCTCTCTCTCTCTCTCTCTGCGATTTC GTCATTCAGTTTCCTCGGGATCTGATCTCACTGCGATTTCCACTTTTTGTTTTGCAGATTATTCAATCGAAGACAATCAG CATTTTCTTCGATCAAACCAAAAAACAAAATGGTAACTATTTTGAAATTCCCTCAAGGATTTGCTGTACCTACTCAGATT TTGTCATGTGCATGCAGTTTTAATATGTGATCTGGATATAAAACCCCAACCCTAGGAACTTATTAACAATATTGAACTGT TTGTAATTAAAATTGAAACCTCTGCCATGGTGATGCTTTTAGCTTCAATCTGTTCTACAATTCTGGACGATTTTTTCATT TTCTTTCACCTCGATTTTAGTTATATAACTTCGAATGTGTAATTTCATCTTAACTTGATTGTACTAGCAATTTGCTTGTC ACTTTAGTGTAGCTCAACCGGTTAGCCCGTGGCATGGTTTACACAGAAGCCATTAGCTAAATCCTTTATGACATTTGTAA ACTGAAAAAGCAAACAGCTCACTGCTTAGGAAAATTAAAAGAAAAGTTCACCTAGGAATGGGAATGCTATGTTTTTTCTT CTTTTTATCTTTCCTGATTTCCGCTATGCTGTATTAGACGTTTTTCCAATTTTATTTTTCTTTGTTGTACAGGTTGTCCT TGCTGCATCCATTGTCAGCAAATCTGGCAAAGGTGAGTAATCGGCGTCCCCTAACGTGTCCTGGTTCTTTTTTTCCTAGT ATCTATCTAGATTGCTTCCGATTTTCTTTCAGTGTATTGTACCTCAGTAAATGACAATTCCACTAGAGGGAATAGAGGAA AGAGAAACATTAGATATATTGTATTCAAGCTGAGATTATTTTAATCCAAATTGACATTTTGAACATAGACCATGGACTTG ATATTTGCCTAAATAATTATGGATTGAACATCAATGCTCTTATGCCAATAAACCGATTGCTTTGTTTGCAGTGCTAGTTT CTAGACATTTTGTGGATATGACTCGTATAAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAA CAACACACATATGTTGAGACCGAGAATGTGCGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAA CAAACAGAGCAACATACTGGAGGATTTGGATACTCTGAGACTTCTCTCTAAACTGGTATCCTTTTCCTGATGCTTTTAGT TTGACCTCTTATATTCTCAAGTCCATTTGTTTTCAATTACTTAGTATTTTTTTTTCTGGTTAGGGTCATTTTTGGTTTTG TCTATTATTTTTATAGGAAATTTTCGGTCTGATCAAATGGTTTGTAGTTTGTACCTGTAGTTATATTAGAGTTATTTGGT CAGTTTTATAGACATTTAATGAAATTTCAGCCAAAATGTTGTGCTAATAGCCAGTTCATTCTTAATACTTTTAGGTGCCC GAATATTCTTACTCCCTTGATGAAGAAGGTATTTGCAAACATGCGTTTGAGCTGATTTTTGCATTTGATGAAGTCATCTC TCTTGGGCACAAGGAAAGTGTGACTGTTGCACAAGTTAAGCAGTATTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACA AGCTGGTTATGCAGAGCAAGATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTA CCATCTGGGGGACTTTTAATATTTTGTTTATATTTAAAGTCTGGGAGTGCACATAATTTATTTAAAATTAATATATGCTT ACCAAAAAAAAATTAAAATTAATATATGCATTTGGCAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCATTA CAGTCAATGGGCTCAGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAGTGG CTCTGGTTTTGGATTGACTCCTGATCTTGATTCCTTTTCTACCAAGTCTAAAGGTTAGTTTTCATAGATTTTCATGAATT CTTCTGGAATGCTTATTAATGTATTGACTTAAAATGAAAGTAAAGCATGCAATATCATTGCTACTATGTTCAAATTAACA TGTTTCTAAATAAAGTGTAATCTTTTCTTTTACCTATTCTTTCATTTTCTTCTATAGCTCGTCCAACTTCATCTGCCACT GCTCCGCCAAAAGGCCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGG TGAGGTCATTGTTGAAGATGTTCAGCCAAGACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTT TAACTGTTGAGGAGAAATTAAATGTGACATTGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCT CTCCAAATTCTTAACCAAGAGGATGCGCATATTCAAGTTCAGGTATTGCATTCTCATTTTCTCTTCCTCGGTCGTATGTC CTACTAATTTGCATAACCTAAGTTTTTTTTTTGAATAATTAATCATTCATTGACATGAAAATTGACAATGGTTTCTTTAA ATATAATCAGCATTTGGAGAAAGAAATTCATGTGAAACAGATTTCTTTTCCCGGCTTAATTTCTTTTGTTTTGTCATGTT GTCAATGTATTTTCCCCCTCAAACTCTCCTCTCGTGGTCTATATCTATTTTGGATAAACAACGAACTACTTCTCTTACAG ATAATTTCTAAAAAGCAGCCTTTATTTAAGTTCCTGGAGGCTCAAATGAGTCCATAATAGGTTTTATCTAGATATATTAT TGTTGGCGAGGCATTGACGTTATGCCCAAGATGAGCTTTTTTTGGCGTGTTTTATAACCACTGAAATTATCTTCTAATGC ACAACCAGCAGTTTGAATTGTTTTGTTGAACATGTCATATTCTTTTTTCTTGAAAAACTGAGACTTTTGAGCCAAGAATG ATGACAAAAAAGGCAGAAAAATAAAAGGGATGAAGATTGAAGAAAAAAAAAATGGAAAGGGGTCCAGATTATAGTGGCTT TGTGGCTGTTTTGTTAGGCAGAAAGGTTGTAATTGAAGAATTTAATGGGTTTTAAATAGCTGTGGTTCTTTGGTTGACCA TGAAGAATTTGACATCTGACGTATATTTAGGGTTTTCACTGACATTGTCATTTTGCTTATCATGAATTGATAATTTCTTT TTCCAATGAAGAAGAAAAATGAAGTCATTTGCATATTGGAAATACAAATGACAAATATTTTCTGTTTGATCAATTTTATT GGTTTTCTTTCTCTAGATTTTCCAAATATTTTGTGCATCATCCTTCATTCTTAGGTGCTCTTAGTCACCCCTCCCTTGTA GACTGGTTTTAAATGCAAATATCACTTTGGCTGTTTGGCGCAATTAACAGTATTGGTCCTCGCATATTGTGCCTTGTTTT TACAGGTCCAGACTGGCGACAATCAAGCCATCTCTTTCAAGACTCACCCTAACATGAATAAAGAATTATTTGCCAATGAA AACAAACTAGGCCTAAAGGATCCAAATAGGCCTTTCCCCACTGGTCAAGCCAGTGATGCTGGAGGTGTTGGTCTTCTAAA GTGGAGAATGCAAAGCACCGACGAGTCAATGGTGCCACTGACAAGTGGGTTTATAACTATCACTGATGTGTTTTACAACT TTGTTTTCATGTCTTAATAACTTACTGTGTACTATATATGTCTATTGCAGTCAACTGCTGGCCCTCTTCTTCTGGAAATG AAACTTATGTCAGCATTGAATATGAGGCTTCATCAATGTTTGATCTGCGGAATGTTGTAATCTCAGTACCTCTTCCAGCT CTTCGTGATGCGCCATCTGTTTCACAGATCGATGGGGAGTGGAGGTGTGGAATTTTTTTTTCCTTCCTCTATAAATATTA GGACATCTCTGATTTTTGTGCTGTGTTTAAGCTGGTAGTTGTGTTCAAAACTATTTCTGTTACACGCTAGTGGTTTGCAA TCTTTTTTAAGTATTTAGTCTCCTAACCATGACCAGATTCGCATGAATTTGAAAGTTCCATGTAGCCCATTATTTCGTCA GATCATTAGTTGATTGTTTCGAATATTTTAGCAATGGCTCTAAATCATTTTATCCCACGTTACGATTTTGCTTGGTTCAC AGTCCTTTATTTTAATTGGGTTTGCAGGTATGACTCTAGGAATTCCATTTTGGAGTGGTCTGTCATTCTGATCGATAATT CTAATCGCAGGTTTGCTAATTTTTGAGTATTTTAACGGTTAACTTATGCTGTGTTATTATCTTTGTATTTCTGGACTTAT TTTGTCTGACTTTAATGTATTTGGCAGTGGGTCAATGGAGTTTGTCGTTCCACAAGCGGACTCGTCGGCATTCTTTCCCA TTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGAGCTGAAGGTTTGGATTTTCTATTTTCTGCAACGATGGATTATA TACTTTACATACTGTTTCTGAATATTTGATTAATGGGAGCTCAAACATGCCCTTTTGTTTTCTCTCTTTGCAGGTTACAA ACATCTTACCACAAAAGGGTGGTAATCCTCCCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGCA TGATTGGTTTTACTCTCTGCTCTGAACTTGTATGACAGTTTTGCTTTTATAGTGGCGTTCTTTTATCAGTTAGCTTTTTA TTTGGCAAGTTGCATCATTTGCTACTAGTCATGAATTTATACTTTAGTTTTAGTACTTCACATAATAGTATGTTGTAAAG TATGACTTATCATAATCAATACTTGAATAATGCTTTGTGACCTGAGTCTTACAGCTAGCAAAACCCGTTTCCTACTGTTA AAGCTTTCGGGCTTGTCTCGATCTTTTGGGCCCA
CDS sequence (LotjaGi5g1v0350800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTCCTTGCTGCATCCATTGTCAGCAAATCTGGCAAAGTGCTAGTTTCTAGACATTTTGTGGATATGACTCGTAT AAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAACAACACACATATGTTGAGACCGAGAATG TGCGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAACAAACAGAGCAACATACTGGAGGATTTG GATACTCTGAGACTTCTCTCTAAACTGGTGCCCGAATATTCTTACTCCCTTGATGAAGAAGGTATTTGCAAACATGCGTT TGAGCTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAGTGTGACTGTTGCACAAGTTAAGCAGTATT GTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTTATGCAGAGCAAGATCAATGAAACTAAGGATGTTATGAAG CGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCATTACAGTCAAT GGGCTCAGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAGTGGCTCTGGTT TTGGATTGACTCCTGATCTTGATTCCTTTTCTACCAAGTCTAAAGCTCGTCCAACTTCATCTGCCACTGCTCCGCCAAAA GGCCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGGTGAGGTCATTGT TGAAGATGTTCAGCCAAGACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTTTAACTGTTGAGG AGAAATTAAATGTGACATTGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTCTCCAAATTCTT AACCAAGAGGATGCGCATATTCAAGTTCAGGTCCAGACTGGCGACAATCAAGCCATCTCTTTCAAGACTCACCCTAACAT GAATAAAGAATTATTTGCCAATGAAAACAAACTAGGCCTAAAGGATCCAAATAGGCCTTTCCCCACTGGTCAAGCCAGTG ATGCTGGAGGTGTTGGTCTTCTAAAGTGGAGAATGCAAAGCACCGACGAGTCAATGGTGCCACTGACAATCAACTGCTGG CCCTCTTCTTCTGGAAATGAAACTTATGTCAGCATTGAATATGAGGCTTCATCAATGTTTGATCTGCGGAATGTTGTAAT CTCAGTACCTCTTCCAGCTCTTCGTGATGCGCCATCTGTTTCACAGATCGATGGGGAGTGGAGGTATGACTCTAGGAATT CCATTTTGGAGTGGTCTGTCATTCTGATCGATAATTCTAATCGCAGTGGGTCAATGGAGTTTGTCGTTCCACAAGCGGAC TCGTCGGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGAGCTGAAGGTTACAAACATCTTACC ACAAAAGGGTGGTAATCCTCCCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGCATGA
Protein sequence (LotjaGi5g1v0350800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVLAASIVSKSGKVLVSRHFVDMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDL DTLRLLSKLVPEYSYSLDEEGICKHAFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMK RKASEIDKSKIEKNRGDKVGFGPLQSMGSGRIENSFSDLSISSSGTGFGSGSGFGLTPDLDSFSTKSKARPTSSATAPPK GLGMKLGKSQRTNQFLESLKAEGEVIVEDVQPRLGQSQSAAPPLTDPITLTVEEKLNVTLKRDGGVSNFDVQGTLSLQIL NQEDAHIQVQVQTGDNQAISFKTHPNMNKELFANENKLGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCW PSSSGNETYVSIEYEASSMFDLRNVVISVPLPALRDAPSVSQIDGEWRYDSRNSILEWSVILIDNSNRSGSMEFVVPQAD SSAFFPISVRFMATDTFSELKVTNILPQKGGNPPKFSQRTQLITENYQVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 529 | 529 | 5.7E-297 | – | |
| PANTHER | 1 | 529 | 529 | 5.7E-297 | ||
| Gene3D | 3 | 155 | 153 | 1.9E-11 | – | |
| CDD | 4 | 133 | 130 | 1.26491E-84 | – | |
| SUPERFAMILY | 5 | 142 | 138 | 7.32E-30 | ||
| MobiDBLite | 222 | 248 | 27 | - | – | |
| Pfam | 285 | 528 | 244 | 5.7E-34 | ||
| ProSiteProfiles | 285 | 530 | 246 | 32.979 | ||
| SUPERFAMILY | 286 | 529 | 244 | 1.31E-24 | ||
| CDD | 286 | 527 | 242 | 2.14212E-113 | – | |
| Gene3D | 288 | 509 | 222 | 7.0E-11 | – | |
| Gene3D | 393 | 492 | 100 | 7.0E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi5g1v0350800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…