Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0350800 |
Transcript ID | LotjaGi5g1v0350800.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66662676..66666668) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTCAGCAAATCTGGCAAAGGTGAGTAATCGGCGTCCCCTAACGTGTCCTGGTTCTTTTTTTCCTAGTATCTATCTAG ATTGCTTCCGATTTTCTTTCAGTGTATTGTACCTCAGTAAATGACAATTCCACTAGAGGGAATAGAGGAAAGAGAAACAT TAGATATATTGTATTCAAGCTGAGATTATTTTAATCCAAATTGACATTTTGAACATAGACCATGGACTTGATATTTGCCT AAATAATTATGGATTGAACATCAATGCTCTTATGCCAATAAACCGATTGCTTTGTTTGCAGTGCTAGTTTCTAGACATTT TGTGGATATGACTCGTATAAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAACAACACACAT ATGTTGAGACCGAGAATGTGCGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAACAAACAGAGC AACATACTGGAGGATTTGGATACTCTGAGACTTCTCTCTAAACTGGTATCCTTTTCCTGATGCTTTTAGTTTGACCTCTT ATATTCTCAAGTCCATTTGTTTTCAATTACTTAGTATTTTTTTTTCTGGTTAGGGTCATTTTTGGTTTTGTCTATTATTT TTATAGGAAATTTTCGGTCTGATCAAATGGTTTGTAGTTTGTACCTGTAGTTATATTAGAGTTATTTGGTCAGTTTTATA GACATTTAATGAAATTTCAGCCAAAATGTTGTGCTAATAGCCAGTTCATTCTTAATACTTTTAGGTGCCCGAATATTCTT ACTCCCTTGATGAAGAAGGTATTTGCAAACATGCGTTTGAGCTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCAC AAGGAAAGTGTGACTGTTGCACAAGTTAAGCAGTATTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTTAT GCAGAGCAAGATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTACCATCTGGGG GACTTTTAATATTTTGTTTATATTTAAAGTCTGGGAGTGCACATAATTTATTTAAAATTAATATATGCTTACCAAAAAAA AATTAAAATTAATATATGCATTTGGCAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCATTACAGTCAATGG GCTCAGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAGTGGCTCTGGTTTT GGATTGACTCCTGATCTTGATTCCTTTTCTACCAAGTCTAAAGGTTAGTTTTCATAGATTTTCATGAATTCTTCTGGAAT GCTTATTAATGTATTGACTTAAAATGAAAGTAAAGCATGCAATATCATTGCTACTATGTTCAAATTAACATGTTTCTAAA TAAAGTGTAATCTTTTCTTTTACCTATTCTTTCATTTTCTTCTATAGCTCGTCCAACTTCATCTGCCACTGCTCCGCCAA AAGGCCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGGTGAGGTCATT GTTGAAGATGTTCAGCCAAGACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTTTAACTGTTGA GGAGAAATTAAATGTGACATTGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTCTCCAAATTC TTAACCAAGAGGATGCGCATATTCAAGTTCAGGTATTGCATTCTCATTTTCTCTTCCTCGGTCGTATGTCCTACTAATTT GCATAACCTAAGTTTTTTTTTTGAATAATTAATCATTCATTGACATGAAAATTGACAATGGTTTCTTTAAATATAATCAG CATTTGGAGAAAGAAATTCATGTGAAACAGATTTCTTTTCCCGGCTTAATTTCTTTTGTTTTGTCATGTTGTCAATGTAT TTTCCCCCTCAAACTCTCCTCTCGTGGTCTATATCTATTTTGGATAAACAACGAACTACTTCTCTTACAGATAATTTCTA AAAAGCAGCCTTTATTTAAGTTCCTGGAGGCTCAAATGAGTCCATAATAGGTTTTATCTAGATATATTATTGTTGGCGAG GCATTGACGTTATGCCCAAGATGAGCTTTTTTTGGCGTGTTTTATAACCACTGAAATTATCTTCTAATGCACAACCAGCA GTTTGAATTGTTTTGTTGAACATGTCATATTCTTTTTTCTTGAAAAACTGAGACTTTTGAGCCAAGAATGATGACAAAAA AGGCAGAAAAATAAAAGGGATGAAGATTGAAGAAAAAAAAAATGGAAAGGGGTCCAGATTATAGTGGCTTTGTGGCTGTT TTGTTAGGCAGAAAGGTTGTAATTGAAGAATTTAATGGGTTTTAAATAGCTGTGGTTCTTTGGTTGACCATGAAGAATTT GACATCTGACGTATATTTAGGGTTTTCACTGACATTGTCATTTTGCTTATCATGAATTGATAATTTCTTTTTCCAATGAA GAAGAAAAATGAAGTCATTTGCATATTGGAAATACAAATGACAAATATTTTCTGTTTGATCAATTTTATTGGTTTTCTTT CTCTAGATTTTCCAAATATTTTGTGCATCATCCTTCATTCTTAGGTGCTCTTAGTCACCCCTCCCTTGTAGACTGGTTTT AAATGCAAATATCACTTTGGCTGTTTGGCGCAATTAACAGTATTGGTCCTCGCATATTGTGCCTTGTTTTTACAGGTCCA GACTGGCGACAATCAAGCCATCTCTTTCAAGACTCACCCTAACATGAATAAAGAATTATTTGCCAATGAAAACAAACTAG GCCTAAAGGATCCAAATAGGCCTTTCCCCACTGGTCAAGCCAGTGATGCTGGAGGTGTTGGTCTTCTAAAGTGGAGAATG CAAAGCACCGACGAGTCAATGGTGCCACTGACAAGTGGGTTTATAACTATCACTGATGTGTTTTACAACTTTGTTTTCAT GTCTTAATAACTTACTGTGTACTATATATGTCTATTGCAGTCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTATGT CAGCATTGAATATGAGGCTTCATCAATGTTTGATCTGCGGAATGTTGTAATCTCAGTACCTCTTCCAGCTCTTCGTGATG CGCCATCTGTTTCACAGATCGATGGGGAGTGGAGGTGTGGAATTTTTTTTTCCTTCCTCTATAAATATTAGGACATCTCT GATTTTTGTGCTGTGTTTAAGCTGGTAGTTGTGTTCAAAACTATTTCTGTTACACGCTAGTGGTTTGCAATCTTTTTTAA GTATTTAGTCTCCTAACCATGACCAGATTCGCATGAATTTGAAAGTTCCATGTAGCCCATTATTTCGTCAGATCATTAGT TGATTGTTTCGAATATTTTAGCAATGGCTCTAAATCATTTTATCCCACGTTACGATTTTGCTTGGTTCACAGTCCTTTAT TTTAATTGGGTTTGCAGGTATGACTCTAGGAATTCCATTTTGGAGTGGTCTGTCATTCTGATCGATAATTCTAATCGCAG GTTTGCTAATTTTTGAGTATTTTAACGGTTAACTTATGCTGTGTTATTATCTTTGTATTTCTGGACTTATTTTGTCTGAC TTTAATGTATTTGGCAGTGGGTCAATGGAGTTTGTCGTTCCACAAGCGGACTCGTCGGCATTCTTTCCCATTTCAGTTCG TTTTATGGCAACTGATACATTTAGTGAGCTGAAGGTTTGGATTTTCTATTTTCTGCAACGATGGATTATATACTTTACAT ACTGTTTCTGAATATTTGATTAATGGGAGCTCAAACATGCCCTTTTGTTTTCTCTCTTTGCAGGTTACAAACATCTTACC ACAAAAGGGTGGTAATCCTCCCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGCATGA
CDS sequence (LotjaGi5g1v0350800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGTATAAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAACAACACACATATGTTGA GACCGAGAATGTGCGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAACAAACAGAGCAACATAC TGGAGGATTTGGATACTCTGAGACTTCTCTCTAAACTGGTGCCCGAATATTCTTACTCCCTTGATGAAGAAGGTATTTGC AAACATGCGTTTGAGCTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAGTGTGACTGTTGCACAAGT TAAGCAGTATTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTTATGCAGAGCAAGATCAATGAAACTAAGG ATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCA TTACAGTCAATGGGCTCAGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAG TGGCTCTGGTTTTGGATTGACTCCTGATCTTGATTCCTTTTCTACCAAGTCTAAAGCTCGTCCAACTTCATCTGCCACTG CTCCGCCAAAAGGCCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGGT GAGGTCATTGTTGAAGATGTTCAGCCAAGACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTTT AACTGTTGAGGAGAAATTAAATGTGACATTGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTC TCCAAATTCTTAACCAAGAGGATGCGCATATTCAAGTTCAGGTCCAGACTGGCGACAATCAAGCCATCTCTTTCAAGACT CACCCTAACATGAATAAAGAATTATTTGCCAATGAAAACAAACTAGGCCTAAAGGATCCAAATAGGCCTTTCCCCACTGG TCAAGCCAGTGATGCTGGAGGTGTTGGTCTTCTAAAGTGGAGAATGCAAAGCACCGACGAGTCAATGGTGCCACTGACAA TCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTATGTCAGCATTGAATATGAGGCTTCATCAATGTTTGATCTGCGG AATGTTGTAATCTCAGTACCTCTTCCAGCTCTTCGTGATGCGCCATCTGTTTCACAGATCGATGGGGAGTGGAGGTATGA CTCTAGGAATTCCATTTTGGAGTGGTCTGTCATTCTGATCGATAATTCTAATCGCAGTGGGTCAATGGAGTTTGTCGTTC CACAAGCGGACTCGTCGGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGAGCTGAAGGTTACA AACATCTTACCACAAAAGGGTGGTAATCCTCCCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGC ATGA
Protein sequence (LotjaGi5g1v0350800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLDTLRLLSKLVPEYSYSLDEEGIC KHAFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNRGDKVGFGP LQSMGSGRIENSFSDLSISSSGTGFGSGSGFGLTPDLDSFSTKSKARPTSSATAPPKGLGMKLGKSQRTNQFLESLKAEG EVIVEDVQPRLGQSQSAAPPLTDPITLTVEEKLNVTLKRDGGVSNFDVQGTLSLQILNQEDAHIQVQVQTGDNQAISFKT HPNMNKELFANENKLGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCWPSSSGNETYVSIEYEASSMFDLR NVVISVPLPALRDAPSVSQIDGEWRYDSRNSILEWSVILIDNSNRSGSMEFVVPQADSSAFFPISVRFMATDTFSELKVT NILPQKGGNPPKFSQRTQLITENYQVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
CDD | 1 | 110 | 110 | 6.76741E-71 | – | |
PANTHER | 1 | 506 | 506 | 6.9E-283 | – | |
PANTHER | 1 | 506 | 506 | 6.9E-283 | ||
SUPERFAMILY | 3 | 119 | 117 | 1.28E-22 | ||
Gene3D | 12 | 132 | 121 | 2.8E-8 | – | |
MobiDBLite | 199 | 225 | 27 | - | – | |
Pfam | 262 | 505 | 244 | 5.1E-34 | ||
ProSiteProfiles | 262 | 507 | 246 | 32.979 | ||
CDD | 263 | 504 | 242 | 4.71786E-114 | – | |
SUPERFAMILY | 263 | 506 | 244 | 1.22E-24 | ||
Gene3D | 265 | 486 | 222 | 6.3E-11 | – | |
Gene3D | 370 | 469 | 100 | 6.3E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi5g1v0350800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…