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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350800 |
| Transcript ID | LotjaGi5g1v0350800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit delta-like protein; TAIR: AT5G05010.1 clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q93Y22|COPD_ARATH Coatomer subunit delta; TrEMBL-Plants: tr|A0A1J7FSC8|A0A1J7FSC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66662936..66666668) extracted from Lotus japonicus Gifu genome v1.2.
TCAATGCTCTTATGCCAATAAACCGATTGCTTTGTTTGCAGTGCTAGTTTCTAGACATTTTGTGGATATGACTCGTATAA GAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAACAACACACATATGTTGAGACCGAGAATGTG CGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAACAAACAGAGCAACATACTGGAGGATTTGGA TACTCTGAGACTTCTCTCTAAACTGGTATCCTTTTCCTGATGCTTTTAGTTTGACCTCTTATATTCTCAAGTCCATTTGT TTTCAATTACTTAGTATTTTTTTTTCTGGTTAGGGTCATTTTTGGTTTTGTCTATTATTTTTATAGGAAATTTTCGGTCT GATCAAATGGTTTGTAGTTTGTACCTGTAGTTATATTAGAGTTATTTGGTCAGTTTTATAGACATTTAATGAAATTTCAG CCAAAATGTTGTGCTAATAGCCAGTTCATTCTTAATACTTTTAGGTGCCCGAATATTCTTACTCCCTTGATGAAGAAGGT ATTTGCAAACATGCGTTTGAGCTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAGTGTGACTGTTGC ACAAGTTAAGCAGTATTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTTATGCAGAGCAAGATCAATGAAA CTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTACCATCTGGGGGACTTTTAATATTTTGTTTA TATTTAAAGTCTGGGAGTGCACATAATTTATTTAAAATTAATATATGCTTACCAAAAAAAAATTAAAATTAATATATGCA TTTGGCAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCATTACAGTCAATGGGCTCAGGAAGAATTGAAAAT AGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAGTGGCTCTGGTTTTGGATTGACTCCTGATCTTGA TTCCTTTTCTACCAAGTCTAAAGGTTAGTTTTCATAGATTTTCATGAATTCTTCTGGAATGCTTATTAATGTATTGACTT AAAATGAAAGTAAAGCATGCAATATCATTGCTACTATGTTCAAATTAACATGTTTCTAAATAAAGTGTAATCTTTTCTTT TACCTATTCTTTCATTTTCTTCTATAGCTCGTCCAACTTCATCTGCCACTGCTCCGCCAAAAGGCCTTGGAATGAAGCTT GGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGGTGAGGTCATTGTTGAAGATGTTCAGCCAAG ACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTTTAACTGTTGAGGAGAAATTAAATGTGACAT TGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTCTCCAAATTCTTAACCAAGAGGATGCGCAT ATTCAAGTTCAGGTATTGCATTCTCATTTTCTCTTCCTCGGTCGTATGTCCTACTAATTTGCATAACCTAAGTTTTTTTT TTGAATAATTAATCATTCATTGACATGAAAATTGACAATGGTTTCTTTAAATATAATCAGCATTTGGAGAAAGAAATTCA TGTGAAACAGATTTCTTTTCCCGGCTTAATTTCTTTTGTTTTGTCATGTTGTCAATGTATTTTCCCCCTCAAACTCTCCT CTCGTGGTCTATATCTATTTTGGATAAACAACGAACTACTTCTCTTACAGATAATTTCTAAAAAGCAGCCTTTATTTAAG TTCCTGGAGGCTCAAATGAGTCCATAATAGGTTTTATCTAGATATATTATTGTTGGCGAGGCATTGACGTTATGCCCAAG ATGAGCTTTTTTTGGCGTGTTTTATAACCACTGAAATTATCTTCTAATGCACAACCAGCAGTTTGAATTGTTTTGTTGAA CATGTCATATTCTTTTTTCTTGAAAAACTGAGACTTTTGAGCCAAGAATGATGACAAAAAAGGCAGAAAAATAAAAGGGA TGAAGATTGAAGAAAAAAAAAATGGAAAGGGGTCCAGATTATAGTGGCTTTGTGGCTGTTTTGTTAGGCAGAAAGGTTGT AATTGAAGAATTTAATGGGTTTTAAATAGCTGTGGTTCTTTGGTTGACCATGAAGAATTTGACATCTGACGTATATTTAG GGTTTTCACTGACATTGTCATTTTGCTTATCATGAATTGATAATTTCTTTTTCCAATGAAGAAGAAAAATGAAGTCATTT GCATATTGGAAATACAAATGACAAATATTTTCTGTTTGATCAATTTTATTGGTTTTCTTTCTCTAGATTTTCCAAATATT TTGTGCATCATCCTTCATTCTTAGGTGCTCTTAGTCACCCCTCCCTTGTAGACTGGTTTTAAATGCAAATATCACTTTGG CTGTTTGGCGCAATTAACAGTATTGGTCCTCGCATATTGTGCCTTGTTTTTACAGGTCCAGACTGGCGACAATCAAGCCA TCTCTTTCAAGACTCACCCTAACATGAATAAAGAATTATTTGCCAATGAAAACAAACTAGGCCTAAAGGATCCAAATAGG CCTTTCCCCACTGGTCAAGCCAGTGATGCTGGAGGTGTTGGTCTTCTAAAGTGGAGAATGCAAAGCACCGACGAGTCAAT GGTGCCACTGACAAGTGGGTTTATAACTATCACTGATGTGTTTTACAACTTTGTTTTCATGTCTTAATAACTTACTGTGT ACTATATATGTCTATTGCAGTCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTATGTCAGCATTGAATATGAGGCTT CATCAATGTTTGATCTGCGGAATGTTGTAATCTCAGTACCTCTTCCAGCTCTTCGTGATGCGCCATCTGTTTCACAGATC GATGGGGAGTGGAGGTGTGGAATTTTTTTTTCCTTCCTCTATAAATATTAGGACATCTCTGATTTTTGTGCTGTGTTTAA GCTGGTAGTTGTGTTCAAAACTATTTCTGTTACACGCTAGTGGTTTGCAATCTTTTTTAAGTATTTAGTCTCCTAACCAT GACCAGATTCGCATGAATTTGAAAGTTCCATGTAGCCCATTATTTCGTCAGATCATTAGTTGATTGTTTCGAATATTTTA GCAATGGCTCTAAATCATTTTATCCCACGTTACGATTTTGCTTGGTTCACAGTCCTTTATTTTAATTGGGTTTGCAGGTA TGACTCTAGGAATTCCATTTTGGAGTGGTCTGTCATTCTGATCGATAATTCTAATCGCAGGTTTGCTAATTTTTGAGTAT TTTAACGGTTAACTTATGCTGTGTTATTATCTTTGTATTTCTGGACTTATTTTGTCTGACTTTAATGTATTTGGCAGTGG GTCAATGGAGTTTGTCGTTCCACAAGCGGACTCGTCGGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACAT TTAGTGAGCTGAAGGTTTGGATTTTCTATTTTCTGCAACGATGGATTATATACTTTACATACTGTTTCTGAATATTTGAT TAATGGGAGCTCAAACATGCCCTTTTGTTTTCTCTCTTTGCAGGTTACAAACATCTTACCACAAAAGGGTGGTAATCCTC CCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGCATGA
CDS sequence (LotjaGi5g1v0350800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGTATAAGAATTGAAGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGTAAACAACACACATATGTTGA GACCGAGAATGTGCGCTATGTTTACCAGCCAATAGAAGCACTGTACCTGCTTCTCGTAACAAACAAACAGAGCAACATAC TGGAGGATTTGGATACTCTGAGACTTCTCTCTAAACTGGTGCCCGAATATTCTTACTCCCTTGATGAAGAAGGTATTTGC AAACATGCGTTTGAGCTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAGTGTGACTGTTGCACAAGT TAAGCAGTATTGTGAGATGGAGAGTCATGAAGAGAAGCTGCACAAGCTGGTTATGCAGAGCAAGATCAATGAAACTAAGG ATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAGAATAGAGGTGATAAAGTAGGATTCGGTCCA TTACAGTCAATGGGCTCAGGAAGAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGTGGAACTGGTTTTGGAAG TGGCTCTGGTTTTGGATTGACTCCTGATCTTGATTCCTTTTCTACCAAGTCTAAAGCTCGTCCAACTTCATCTGCCACTG CTCCGCCAAAAGGCCTTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAATTTTTAGAATCATTGAAAGCAGAAGGT GAGGTCATTGTTGAAGATGTTCAGCCAAGACTTGGCCAGTCTCAGTCAGCTGCCCCACCACTTACTGATCCCATCACTTT AACTGTTGAGGAGAAATTAAATGTGACATTGAAAAGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGAACATTGTCTC TCCAAATTCTTAACCAAGAGGATGCGCATATTCAAGTTCAGGTCCAGACTGGCGACAATCAAGCCATCTCTTTCAAGACT CACCCTAACATGAATAAAGAATTATTTGCCAATGAAAACAAACTAGGCCTAAAGGATCCAAATAGGCCTTTCCCCACTGG TCAAGCCAGTGATGCTGGAGGTGTTGGTCTTCTAAAGTGGAGAATGCAAAGCACCGACGAGTCAATGGTGCCACTGACAA TCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTATGTCAGCATTGAATATGAGGCTTCATCAATGTTTGATCTGCGG AATGTTGTAATCTCAGTACCTCTTCCAGCTCTTCGTGATGCGCCATCTGTTTCACAGATCGATGGGGAGTGGAGGTATGA CTCTAGGAATTCCATTTTGGAGTGGTCTGTCATTCTGATCGATAATTCTAATCGCAGTGGGTCAATGGAGTTTGTCGTTC CACAAGCGGACTCGTCGGCATTCTTTCCCATTTCAGTTCGTTTTATGGCAACTGATACATTTAGTGAGCTGAAGGTTACA AACATCTTACCACAAAAGGGTGGTAATCCTCCCAAATTTTCTCAGAGAACACAGTTGATAACGGAAAACTACCAAGTTGC ATGA
Protein sequence (LotjaGi5g1v0350800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEALYLLLVTNKQSNILEDLDTLRLLSKLVPEYSYSLDEEGIC KHAFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNRGDKVGFGP LQSMGSGRIENSFSDLSISSSGTGFGSGSGFGLTPDLDSFSTKSKARPTSSATAPPKGLGMKLGKSQRTNQFLESLKAEG EVIVEDVQPRLGQSQSAAPPLTDPITLTVEEKLNVTLKRDGGVSNFDVQGTLSLQILNQEDAHIQVQVQTGDNQAISFKT HPNMNKELFANENKLGLKDPNRPFPTGQASDAGGVGLLKWRMQSTDESMVPLTINCWPSSSGNETYVSIEYEASSMFDLR NVVISVPLPALRDAPSVSQIDGEWRYDSRNSILEWSVILIDNSNRSGSMEFVVPQADSSAFFPISVRFMATDTFSELKVT NILPQKGGNPPKFSQRTQLITENYQVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 110 | 110 | 6.76741E-71 | – | |
| PANTHER | 1 | 506 | 506 | 6.9E-283 | – | |
| PANTHER | 1 | 506 | 506 | 6.9E-283 | ||
| SUPERFAMILY | 3 | 119 | 117 | 1.28E-22 | ||
| Gene3D | 12 | 132 | 121 | 2.8E-8 | – | |
| MobiDBLite | 199 | 225 | 27 | - | – | |
| Pfam | 262 | 505 | 244 | 5.1E-34 | ||
| ProSiteProfiles | 262 | 507 | 246 | 32.979 | ||
| CDD | 263 | 504 | 242 | 4.71786E-114 | – | |
| SUPERFAMILY | 263 | 506 | 244 | 1.22E-24 | ||
| Gene3D | 265 | 486 | 222 | 6.3E-11 | – | |
| Gene3D | 370 | 469 | 100 | 6.3E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi5g1v0350800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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