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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0359600 |
| Transcript ID | LotjaGi5g1v0359600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U4/U6 small nuclear ribonucleoprotein Prp3; TAIR: AT1G28060.1 Pre-mRNA-splicing factor 3; Swiss-Prot: sp|Q9C7E7|RDM16_ARATH Protein RDM16; TrEMBL-Plants: tr|A0A151SCZ2|A0A151SCZ2_CAJCA U4/U6 small nuclear ribonucleoprotein Prp3; Found in the gene: LotjaGi5g1v0359600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67420014..67423208) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGCTTGTTTACTTTACTATTAATTCTGTATGTTCCTCTGAATGTATTAAGTGCTGTGCTTTTGGTTGTGCAGTCGA ATAAAATTTCTACCCCAAATAATGAATCAACTGTACCCTCTCTCAGTGTTGAAAAGCCATCAAGTCCTGCCCCCTTAGCT TCTTCTGGGCCTGTTGCAAGTATGTCAATTTTCCCTAATGCTGCTGCTGCTACTTCTACTCTTGCAAGTCCTGCAGCTAG TGGTACTAGTGCTGCTGGTGTACCCAACTATGAAGCTGTCAGGCGTGCTCAGGAGCTTGCGGCCAGGATGGGGTTTCGTC AAGATCCACAATTTGCTCCTCTTATAAACATGTTTCCTGGTCAGATGGTACCGGATGTTACAATCCCACAGAAACCCACA AAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGGAAATAGATGAACATGGAAATGTTGTTAATGTAACTAAACCAAG CAACCTTAGCACTTTGAAGGTGCGTGATTTATCCATTGTCTCTTTTTATATTGTATCCTTTTGCGCTTTGGATTTGTGTC TTAACACTACAATTTGTGTATCAACATTCCAGGTCAACATTAACAAACAGAAGAAAGATGCGTTTGAAATACTGAAACCT GTATTAGATGTCGATCCTGATTCTAATCCTCATTTTGATCCAAGGATGGGGGTCAACAAGACAAAGCTCCTGCGGCCCAA AAGGAATAATTTCCTGTTTGTGGAAGAGGGAAAATGGTCAAAAGATGCTGAAACAATAAAATTGAAGGTATCTTTTTGCC ATTCATCTTCTCTTACTCTAGACATGGACCTACCCTTCGACTTAATTATTTTTAAGTGTCTTATATGTTTTTTTTAAATA AGCAATTGTCTTATACGTGTTTTTACATATTATTTGACTCATTCAGAGTCAATTTGGAGAAGCTCAAGCAAAGGAGCAGA AGGCCAAACAAGCGCAGTTGGCAAAGGCGAAGGCTGCTCCTGATATAAATCCAAACTTAATAGAAATAACAGAGAGGGTT GTGATTAAAGAAAAACTCAAGGATCCAATTCCAGAAATCGAGTGGTGGTAAGTTCTTGCCTATTTAGACTACTAGTTTCT ATTCTACATGATTGCAAATTATAAGGATTATGTTAATTTTTTTTAGCTAGTATGCTGTATATGATTAAGAGGTTATGGCT TTAATTTTCCTTTCTATTGCTTGTAATGATGACTTTAATCAGAAGAAGATACAAAGTTATAAACTGGAATAGCCTGATGT TCTCAATGGCAGATGATGTTTTGTTGCGGAAAGCCGGAAAGCCAAAAATCCGCCATAGAAATATGGAGGATGGTGTTGTG GAGTATGGCGGAAGCCATGGCCACCGCAATTAAAATATAGTATATATAAAACTATATAAAATAGGCCTGCATAGTATAAT AAAGTAAATAATTACCTATGTCGATATCAGCGATCTGAACTGATAGGAAACCCTTAAATATAACACAATATAGAACACCA TAAGTCTCTTAACATTAATTCAAAAGAAAGTAAAATACCTTCACGTTTGAGTTTCAAGTGAAAATCAAAGATTGAAAACA TGACAAACTGAAATAATAGTGAGAATGAGAACCATACTGAGCTAAAACTTAAAGGGAAGTGGACTGTTACGAATATGAGG GTGATGTCTACTTGTATAGTAACATGAAACGAATGGGTTGAGTACACTGGGGGGGGGTGTAATTCACAAAGTAGATGAGC AGAAAAAACATAAATGTCGAATTGGTGGGGAACGAGAGGTGGGGAACAGAAAGAACAGGAGTTCTGGTTATCGATGGTAG AAGTGGGTTTTAGGGTTTCAGATTGGTTTATCCCTTAAAATGTGCAGGGTCACAACTTCTGCCAGTTTTGCTATTTTGAC CCATTGCCGCATGGGGATTGCAGCTGCCATCCAAAACCTGCCACACCATTGTACTTGTATGGTTGTGTGGCCAAATTCCG CCATGGCCTCCATTTGGTAACACTGAATAGACCACCTTGATTGATTAATGAGAAACTGCTAGAGTACTCAGTTGAATAAG TGACTATTTGTGTCTACCTTAGATTGCCAGTAAGTTAAGACTTGGCAGTAAACTGAACAACTTGACATCAGTGACTATTT GTGAATCTAGTATTGCCTTTCTTCTGGAAATTTTGTCTTATTTAGCTGTTCTTAAATACAGAAAAATTAGAAGCAGGAAA TATGATCAAAATATATATATTTCTTTAGTTCATGAGTTTATAAATATCTAATCAACTGTTTGAAATTATTAGGGACTTGC CTCTTTTGCAATCTGGGAATTATGGTGACATTGCTGACGGATCCATAGATGAAGATAAACTGAAAATGGAAAAAATCACT TTTTATGTGGAGCATCCTCGTCCCATTGAGCCACCTGCTGAGCCTGCCCCACCTCCACCTCAACCCCTCAAGCTAACCAA GCAAGAACAGAAGAAACTCCGGACACAAAGGCGTATAGCTAAGGAGAAAGATAGACAGGAGATGATAAGACAGGGAGTCA TAGAACCCCCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGTGCTGAGGCAACTCAAGATCCTACTCGG CTTGAAAAGGAAATACGCAGTGCAGCTGCTGAGCGTGAGCAGGCCCACATAGATAGGAACATTGCTCGCAAGCTCACTCC TGCTGAGCTGCGTGAGAAGAAGGAGAGGAAGCTGTTTGATGACCCAAATACAGTTGAGACACTTGTCTCACTCTACAGGA TAAACGATCTCTCTCATCCGAAGGCCCGCTTTAGAGTTGATGTTAATGCTCAAGAGAACCGTTTGACTGGATGTGCTGTG ATCAGCGATGGTATGAGTATTGTTGTGGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGAAAGCTCATGCTTAGACG TATCAATTGGAGTGATGTTTCAAAAGAGAATGAAGAAAATGACGAGTCAGATGATGACAAGCCTGTCAATAAATGTGTTT TGGTGTGGCAAGGAAGTGTTGCCAAACCGAGCTTCAATAGGTTCAGTGTTCATGATTGCATCACTGAAGCAGCTGCTCGA AAAGTCTTTGTGGATGCTGGTGTTCCTCATTATTGGGATCAAGCTGTCAACTACGTAGATGATGGAGCTGTTTGA
CDS sequence (LotjaGi5g1v0359600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATTTTCCCTAATGCTGCTGCTGCTACTTCTACTCTTGCAAGTCCTGCAGCTAGTGGTACTAGTGCTGCTGGTGT ACCCAACTATGAAGCTGTCAGGCGTGCTCAGGAGCTTGCGGCCAGGATGGGGTTTCGTCAAGATCCACAATTTGCTCCTC TTATAAACATGTTTCCTGGTCAGATGGTACCGGATGTTACAATCCCACAGAAACCCACAAAGGCCCCTGTTCTTCGTCTT GATGCTCAGGGACGGGAAATAGATGAACATGGAAATGTTGTTAATGTAACTAAACCAAGCAACCTTAGCACTTTGAAGGT CAACATTAACAAACAGAAGAAAGATGCGTTTGAAATACTGAAACCTGTATTAGATGTCGATCCTGATTCTAATCCTCATT TTGATCCAAGGATGGGGGTCAACAAGACAAAGCTCCTGCGGCCCAAAAGGAATAATTTCCTGTTTGTGGAAGAGGGAAAA TGGTCAAAAGATGCTGAAACAATAAAATTGAAGAGTCAATTTGGAGAAGCTCAAGCAAAGGAGCAGAAGGCCAAACAAGC GCAGTTGGCAAAGGCGAAGGCTGCTCCTGATATAAATCCAAACTTAATAGAAATAACAGAGAGGGTTGTGATTAAAGAAA AACTCAAGGATCCAATTCCAGAAATCGAGTGGTGGGACTTGCCTCTTTTGCAATCTGGGAATTATGGTGACATTGCTGAC GGATCCATAGATGAAGATAAACTGAAAATGGAAAAAATCACTTTTTATGTGGAGCATCCTCGTCCCATTGAGCCACCTGC TGAGCCTGCCCCACCTCCACCTCAACCCCTCAAGCTAACCAAGCAAGAACAGAAGAAACTCCGGACACAAAGGCGTATAG CTAAGGAGAAAGATAGACAGGAGATGATAAGACAGGGAGTCATAGAACCCCCAAAACCAAAGGTCAAGATTAGCAATTTA ATGAAAGTACTTGGTGCTGAGGCAACTCAAGATCCTACTCGGCTTGAAAAGGAAATACGCAGTGCAGCTGCTGAGCGTGA GCAGGCCCACATAGATAGGAACATTGCTCGCAAGCTCACTCCTGCTGAGCTGCGTGAGAAGAAGGAGAGGAAGCTGTTTG ATGACCCAAATACAGTTGAGACACTTGTCTCACTCTACAGGATAAACGATCTCTCTCATCCGAAGGCCCGCTTTAGAGTT GATGTTAATGCTCAAGAGAACCGTTTGACTGGATGTGCTGTGATCAGCGATGGTATGAGTATTGTTGTGGTTGAAGGTGG AAGCAAGTCAATTAAGAGGTATGGAAAGCTCATGCTTAGACGTATCAATTGGAGTGATGTTTCAAAAGAGAATGAAGAAA ATGACGAGTCAGATGATGACAAGCCTGTCAATAAATGTGTTTTGGTGTGGCAAGGAAGTGTTGCCAAACCGAGCTTCAAT AGGTTCAGTGTTCATGATTGCATCACTGAAGCAGCTGCTCGAAAAGTCTTTGTGGATGCTGGTGTTCCTCATTATTGGGA TCAAGCTGTCAACTACGTAGATGATGGAGCTGTTTGA
Protein sequence (LotjaGi5g1v0359600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIFPNAAAATSTLASPAASGTSAAGVPNYEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVPDVTIPQKPTKAPVLRL DAQGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFEILKPVLDVDPDSNPHFDPRMGVNKTKLLRPKRNNFLFVEEGK WSKDAETIKLKSQFGEAQAKEQKAKQAQLAKAKAAPDINPNLIEITERVVIKEKLKDPIPEIEWWDLPLLQSGNYGDIAD GSIDEDKLKMEKITFYVEHPRPIEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKDRQEMIRQGVIEPPKPKVKISNL MKVLGAEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTVETLVSLYRINDLSHPKARFRV DVNAQENRLTGCAVISDGMSIVVVEGGSKSIKRYGKLMLRRINWSDVSKENEENDESDDDKPVNKCVLVWQGSVAKPSFN RFSVHDCITEAAARKVFVDAGVPHYWDQAVNYVDDGAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 518 | 494 | - | – | |
| PANTHER | 27 | 511 | 485 | 6.2E-252 | ||
| Pfam | 131 | 360 | 230 | 4.8E-63 | ||
| MobiDBLite | 261 | 284 | 24 | - | – | |
| MobiDBLite | 262 | 278 | 17 | - | – | |
| Coils | 277 | 299 | 23 | - | – | |
| Pfam | 385 | 509 | 125 | 1.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | U4/U6 x U5 tri-snRNP complex | A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. |
Expression pattern of LotjaGi5g1v0359600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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