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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0360800 |
| Transcript ID | LotjaGi5g1v0360800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT3G60750.1 Transketolase; Swiss-Prot: sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic; TrEMBL-Plants: tr|A0A151RWZ7|A0A151RWZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0360800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67507057..67510549) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCTTCTTCTTCCCTTCACTTATCACAAGCACTTGCTGTGAATCTTCACGGTGGCTTCAACTCTTCTTCTTCTTC CTCTGATCGTGTTGCACTCTCCAATTCTTTCCCTGCATTCTCTGGTTTGAAATCGCATTCTTCATGCAAACATGCTGCTA CCCCTTCACGCAGAAGGGTTGGTGGAACTACCACCTCCACCATGGTTCGTGCCACTGCTGTTGAGACACTTGACAAGACC GCTGAGGTTTCTCTGGTGGAGAAATCTGTTAACACCATTCGGTTTCTCTCCATTGATGCTGTTGAGAAGGCCAATTCCGG TCACCCGGGTTTACCTATGGGTTGTGCTCCGATGGGTCATATTCTCTATGATGAGATCATGAGGTACAATCCTAAGAACC CTTCTTGGTTCAACCGTGACAGGTTTGTTCTCTCTGCTGGCCATGGATGCATGCTCCAGTATGCTCTGCTTCACCTTGCT GGATATGACAGTGTCAAGGTGAATTGTCCTTTTCCTTGTCTTTATCTATTTACTGCTGGTTTGGTTGGGATTAATGCATA GAATCAATTTTGGGGAGAAGTTTTTATGAGTAATATATGGGTTTTATAATTGATTATAAAGAGAGAGAAGCTGGATCTGT GAGAATCTAAATCCGGGCTTTACTTTTTTAATGAAAAGCTGTCATGGGAATGAAACATGCAAAGAATTGTAAGGATGTCA GTTTTCAATTAGTTGTGATATTCATGCCATCTGCATTATTAATGATGTAACATTGTTGTTTTGTTTTAGATGCAAATAAT TTCATTTACTTTGATTGGTGAAACTGTTTTGAATGAATCCTTTTAAATGTGTGACATTGTTTTATATCTGTTTTGGTGAG ATGTGTTGTGATATATACCTATCAAAATGTTTATTATGACTTTTTATGAAAATATAGCTGTGGGATCTTCATTAAGCTGA ATTTATTGTGCTGTGGTGAAATAATAGGAAGAGGACTTGAAGGAATTCCGTCAGTGGGGAAGCAAAACTCCTGGGCATCC TGAGAATTTTGAGACATATGGAATTGAAGTGACCACAGGTCTGATATCTCTTTAGTTTATGTTACCACGAGTATGACCCC TTTTTGGCTATGTTTTGTTATCCCAATTATCCTCTTGTTTTGTTTAGGTCCTCTGGGTCAGGGCATTGCCAACGGCGTTG GATTGGCACTTGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAGTGAGATTGTTGACCATTACACGTAAGCT AACTGCATCTTGTTCCCGGCCCTCTATCTACATTGTGATCTGTGCACTTGTAATGCCTTGCTTTCTTGGTGTTTACTAAT GAGATTTTTCTTATCTTTTGCCTCCAGGTATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATATCGAATGAAGCAT GCTCACTTGCTGGCCACTGGGGTCTAGGGAAGCTTATTGCTTTATATGATGACAACCACATTTCCATTGATGGTGACACT GAAATTGCATTCACTGAGAATGTTGATAAACGTTTTGAGGCACTTGGGTGGCATGTAATTTGGGTAAAGAATGGAAATAC TGGGTACGATGAGATTCGTGCAGCCATTAAGGAAGCAAAGGCTGTCAAAGACAAACCTACCCTGATCAAGGTTAGTGACA TGAAATGGAGCTTCCAGTAAATGGATTTATCCAATCCATCTGATGTTTGACTTTATCATACTAGTCGAAGTAGCTTAACA AACAATAACATGAGTACTGCAAGAATGAAACTAAACCATTTTTATGTGTTTTTTTTATTGTTTATATCTGTTTTATTCAG CTTATTTGTTGGTCATATCATATTTCATTGTGATTATTTTTTCACAGGTAACCACTACCATTGGATTTGGTTCTCCAAAC AAGGCTAATTCATACAGTGTTCATGGAAGTGCATTGGGTGCTAAAGAAGTGGATGCTACTAGGAAGAATCTTGGATGGCC ACATGAACCTTTCCATGTGCCAGAAGAAGTTAAAAAGTATGCATTTTGGGTGGTTAAATGTTCTGTTTCCTGTTAGTCAA CTGAAATTTTCATGATCTTGAATGAAACTCATTTAACATTCTACAGGCATTGGAGTCGCCATGTCCCTGAGGGTGCTGCA CTTGAAGCTGAGTGGAATGCTAAGTTTGCTGAATATGAGAAGAAATACAAGGAGGATGCTGAAGAGCTAAAATCTATTAT TACTGGTGTATTACCTGCTGGTTGGGAGAAAGCACTCCCGGTGAGTAAAGTGCCAAACTTTTAGGCTTCTTCTTATCTTT GTCTTGAGGTATCTCCCCAGTAGTTTACATTATGTCCGATCCAAATTTATCATGAATTTTACGCAAAAGGGTGTTAAAAT TCATGTTAATTGGCATGTTAATTGCATCTTCTTCATCACACTTCTGCTTCAAAGTTTTAAGATAAGTAAACCCGTCCTCC ACTAATAGTTTCTGGAATATTGATCACATTTCCAATTTGATTTCATCTTTCAGACATACACTCCAGAAAACCCTGGTGAT GCTACAAGAAATCTGTCTCAGCAAAATCTAAATGCCCTTGCTAAGGTTCTCCCTGGTCTGATTGGTGGCAGTGCAGATCT TGCTTCTTCCAACATGACCTTGTTGAAAAGTTATGGAGATTTCCAAAAGGATACCCCAGAAGAGCGCAATGTTCGATTTG GTGTTAGAGAGCACGGAATGGGAGCAATCTGCAATGGTATTGCTCTTCACAGCCCTGGATTCATTCCATATTGTGCAACT TTCTTTGTCTTCACTGACTACATGAGAGCCGCCATAAGGATTTCGGCGCTGTCCGAAGCTGGAGTTATCTATGTTATGAC TCATGATTCAATTGGACTTGGAGAGGATGGACCAACTCATCAGCCAATAGAGCACTTGGCAAGCTTCCGGGCAATGCCGA ATGTTTTGATGCTTCGTCCGGCTGATGGTAATGAAACTGCCGGATCATACAAAGTTGCCGTGCTTAACAAGAAGAGACCC TCAATCCTTGCCCTTTCTCGGCAAAAGTTACCCCAGCTTCCGGGAACTTCTATTGAAGGAGTTGAAAAGGGTGGCTACAT CATTTCAGACAACTCATCAGGTAACAAGCCTGATGTGATCTTGCTGAGCACTGGTTCTGAGTTGGAAATTGCCGCCGCTG CTGGTGAGGATCTAAGGAAGGAAGGAAAAACTGTTAGAGTTGTTTCTTTTGTTAGCTGGGAACTTTTTGATGACCAGTCA GATGAATACAAGGAGAGTGTTCTCCCTGCTGCTGTGACAGCTAGAGTTAGCATTGAGGCAGCATCAACCTTTGGTTGGCA TAAGCTTGTTGGAAGCAAAGGAAAAGCCATAGGCATTGATCGATTCGGAGCAAGTGCTCCAGCAGGAAAAATATATAAGG AGTTCGGTATCACCAAGGAAGCTGTTATTGCTGCTGCCAAAGAAGTTTCTTAG
CDS sequence (LotjaGi5g1v0360800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCTTCTTCCCTTCACTTATCACAAGCACTTGCTGTGAATCTTCACGGTGGCTTCAACTCTTCTTCTTCTTC CTCTGATCGTGTTGCACTCTCCAATTCTTTCCCTGCATTCTCTGGTTTGAAATCTACCACCTCCACCATGGTTCGTGCCA CTGCTGTTGAGACACTTGACAAGACCGCTGAGGTTTCTCTGGTGGAGAAATCTGTTAACACCATTCGGTTTCTCTCCATT GATGCTGTTGAGAAGGCCAATTCCGGTCACCCGGGTTTACCTATGGGTTGTGCTCCGATGGGTCATATTCTCTATGATGA GATCATGAGGTACAATCCTAAGAACCCTTCTTGGTTCAACCGTGACAGGTTTGTTCTCTCTGCTGGCCATGGATGCATGC TCCAGTATGCTCTGCTTCACCTTGCTGGATATGACAGTGTCAAGGAAGAGGACTTGAAGGAATTCCGTCAGTGGGGAAGC AAAACTCCTGGGCATCCTGAGAATTTTGAGACATATGGAATTGAAGTGACCACAGGTCCTCTGGGTCAGGGCATTGCCAA CGGCGTTGGATTGGCACTTGCTGAGAAGCACTTGGCTGCACGATTTAACAAGCCTGACAGTGAGATTGTTGACCATTACA CGTATGTTATATTGGGTGATGGTTGTCAAATGGAGGGAATATCGAATGAAGCATGCTCACTTGCTGGCCACTGGGGTCTA GGGAAGCTTATTGCTTTATATGATGACAACCACATTTCCATTGATGGTGACACTGAAATTGCATTCACTGAGAATGTTGA TAAACGTTTTGAGGCACTTGGGTGGCATGTAATTTGGGTAAAGAATGGAAATACTGGGTACGATGAGATTCGTGCAGCCA TTAAGGAAGCAAAGGCTGTCAAAGACAAACCTACCCTGATCAAGGTAACCACTACCATTGGATTTGGTTCTCCAAACAAG GCTAATTCATACAGTGTTCATGGAAGTGCATTGGGTGCTAAAGAAGTGGATGCTACTAGGAAGAATCTTGGATGGCCACA TGAACCTTTCCATGTGCCAGAAGAAGTTAAAAAGCATTGGAGTCGCCATGTCCCTGAGGGTGCTGCACTTGAAGCTGAGT GGAATGCTAAGTTTGCTGAATATGAGAAGAAATACAAGGAGGATGCTGAAGAGCTAAAATCTATTATTACTGGTGTATTA CCTGCTGGTTGGGAGAAAGCACTCCCGACATACACTCCAGAAAACCCTGGTGATGCTACAAGAAATCTGTCTCAGCAAAA TCTAAATGCCCTTGCTAAGGTTCTCCCTGGTCTGATTGGTGGCAGTGCAGATCTTGCTTCTTCCAACATGACCTTGTTGA AAAGTTATGGAGATTTCCAAAAGGATACCCCAGAAGAGCGCAATGTTCGATTTGGTGTTAGAGAGCACGGAATGGGAGCA ATCTGCAATGGTATTGCTCTTCACAGCCCTGGATTCATTCCATATTGTGCAACTTTCTTTGTCTTCACTGACTACATGAG AGCCGCCATAAGGATTTCGGCGCTGTCCGAAGCTGGAGTTATCTATGTTATGACTCATGATTCAATTGGACTTGGAGAGG ATGGACCAACTCATCAGCCAATAGAGCACTTGGCAAGCTTCCGGGCAATGCCGAATGTTTTGATGCTTCGTCCGGCTGAT GGTAATGAAACTGCCGGATCATACAAAGTTGCCGTGCTTAACAAGAAGAGACCCTCAATCCTTGCCCTTTCTCGGCAAAA GTTACCCCAGCTTCCGGGAACTTCTATTGAAGGAGTTGAAAAGGGTGGCTACATCATTTCAGACAACTCATCAGGTAACA AGCCTGATGTGATCTTGCTGAGCACTGGTTCTGAGTTGGAAATTGCCGCCGCTGCTGGTGAGGATCTAAGGAAGGAAGGA AAAACTGTTAGAGTTGTTTCTTTTGTTAGCTGGGAACTTTTTGATGACCAGTCAGATGAATACAAGGAGAGTGTTCTCCC TGCTGCTGTGACAGCTAGAGTTAGCATTGAGGCAGCATCAACCTTTGGTTGGCATAAGCTTGTTGGAAGCAAAGGAAAAG CCATAGGCATTGATCGATTCGGAGCAAGTGCTCCAGCAGGAAAAATATATAAGGAGTTCGGTATCACCAAGGAAGCTGTT ATTGCTGCTGCCAAAGAAGTTTCTTAG
Protein sequence (LotjaGi5g1v0360800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSLHLSQALAVNLHGGFNSSSSSSDRVALSNSFPAFSGLKSTTSTMVRATAVETLDKTAEVSLVEKSVNTIRFLSI DAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPSWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKEFRQWGS KTPGHPENFETYGIEVTTGPLGQGIANGVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGISNEACSLAGHWGL GKLIALYDDNHISIDGDTEIAFTENVDKRFEALGWHVIWVKNGNTGYDEIRAAIKEAKAVKDKPTLIKVTTTIGFGSPNK ANSYSVHGSALGAKEVDATRKNLGWPHEPFHVPEEVKKHWSRHVPEGAALEAEWNAKFAEYEKKYKEDAEELKSIITGVL PAGWEKALPTYTPENPGDATRNLSQQNLNALAKVLPGLIGGSADLASSNMTLLKSYGDFQKDTPEERNVRFGVREHGMGA ICNGIALHSPGFIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPAD GNETAGSYKVAVLNKKRPSILALSRQKLPQLPGTSIEGVEKGGYIISDNSSGNKPDVILLSTGSELEIAAAAGEDLRKEG KTVRVVSFVSWELFDDQSDEYKESVLPAAVTARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAV IAAAKEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 728 | 728 | 0.0 | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 728 | 728 | 0.0 | ||
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 728 | 714 | - | – | |
| SUPERFAMILY | 61 | 386 | 326 | 8.97E-118 | ||
| Gene3D | 65 | 393 | 329 | 1.9E-138 | – | |
| Pfam | 70 | 401 | 332 | 1.3E-152 | ||
| TIGRFAM | 70 | 727 | 658 | 3.9E-285 | ||
| CDD | 73 | 340 | 268 | 4.51986E-147 | ||
| ProSitePatterns | 76 | 96 | 21 | - | ||
| Gene3D | 394 | 600 | 207 | 2.9E-82 | – | |
| SUPERFAMILY | 400 | 591 | 192 | 7.99E-66 | ||
| SMART | 418 | 590 | 173 | 4.5E-60 | ||
| Pfam | 419 | 589 | 171 | 7.6E-45 | ||
| CDD | 422 | 585 | 164 | 1.08807E-63 | – | |
| ProSitePatterns | 532 | 548 | 17 | - | ||
| SUPERFAMILY | 594 | 727 | 134 | 5.28E-39 | ||
| Gene3D | 601 | 727 | 127 | 6.5E-42 | ||
| Pfam | 614 | 720 | 107 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Transketolase activity | Catalysis of the reversible transfer of a 2-carbon ketol group (CH2OH-CO-) from a ketose phosphate donor to an aldose phosphate acceptor. |
Expression pattern of LotjaGi5g1v0360800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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