Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045000 |
| Transcript ID | LotjaGi6g1v0045000.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R4J4L8|A0A0R4J4L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8444311..8449044) extracted from Lotus japonicus Gifu genome v1.2.
GATCAATGAAGGGAGAGAACGATAAGGTAGGATTACATTTTTGTAATTTAACTTTTAATATCTTTAAATTTTAAATATTA ATTATATAATAATAGTAATATTTTAATTTTCCACCAATGTTTCATATTTTTCAAGTAATTCATTCATAAGCAATTAACTA ATATGCACTTGATAAGCTTATTTAAATTTATCTTTATGACATGAAAACATTCGCAAAGTTTTGACTAAGCTTATAAAATA ACATGACTTAACTTTAATTTTTGTGTGTTTATTTTCATAAGCTTTTATTTAACTTATAAGAAATATTTTCACATCCACGA TAATTTATTTTGAATTTATTTCAATAAAGATCAATTTCACAAACGAGGTTGTTTTCGTCATTCTATCTATTCTTCATCAA CAAGAAAAAGAAAAGAAAATCAAATCAAAAGCAATTCCAATCCCACACTCACTCCGAAACCCAAACCCTATTCCCTCAAA ATCCTTCGATTTTCCCCAATTCTTCACCAACAACCATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAG CCACCACCGTCCCTTCAGTCAGCGAAATCGGATTACCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCT GAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATATCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCG AGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATCCAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGAC ACGAACAACGGCATCGTTGGCTCCACAACGGGATCCAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCT CAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACTCCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTA TCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTCACTTACAATGTCAGTAATTTCTTAATTTGGTTTTGGATTAGGGAT TTCTTTTCACAAAATCTAGGGTTAAACTTGAATGCAACAGTTTCATTTTATTTAATCATGGTTTGCGGTTTGATTATAAT GCTTAGGTCTTGCAAAAGTGAAATTTAGCTTTGGTGGTTGTGGTTTGAACTGTTTAGATGAAATCAAAATGGGAAAGGAA AGTTCTTTGGATTTGAAGAAAGTAATAATGCTGTGCAACATAATGATTACTTTGTTAAAGAAAAAATGAGGAAGTGATTA TATTTGCGCGTTTCATTTTATGTAGCTTCTTGGGTTAGTAGTTGCTATATAAGCTAGAGAAGTATGTTCTTCTAGAGTTA GAGTGGGAGCCATAGATGAATGAGCTTGGGAAGTTCTCTTAATTCTTTATTTGTAGCTTGGAATCTTGGATTGTGACGCC ACGCCAGAGGTTGTAAACATTGCTGATTAGATATTCGTTAAGTTATATGCTAGATTGTATTGAGTCTAGGAGGTTGTAGG GTGATAGCAGTGAAACTCAGACTATAGGACTATCATTGTGGATGGGTGGGAATTTTGACCTTCCAAGGAATGTGATGGTG TCTAATGAGGAAGACGATAGAGGTGATGAAGTGTAATACAGGCACATTACTCATACAATTCTGCGGTATAATTTATCTTG GTTAAGTCAATGACACTGGTACTAAGTAGTATTAACAAAATATACTTTTATAGCATGTTTGTTAGACCTTGTGTGTAGTA TGTATTGTTTGTCATCATAAGCTATTTTTTTCATATGGGCTGGCCATAGCATAATTCCCCCTTAATATGGTTTTGATCTT TGTAGGACATTGGAGGGTGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGATCTA TACAAACAGATTGGTATTGATCCTCCTCGTGGTGTTCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTGCAAA AGCTGTGGCAAATCATACTACTGCGGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAGGTAT GAATTTTATGACATTTACATGGGAAGTGGTGTTAACTATGTTTTGCAACTTACTCTGCTATCTTTGTTTGCTTTTGAATA TTATGGCTTTCAGGATCATGATTATTGATGTTATTGTGCTCTTTATATTTACTAATTTTATTTCAAATTTGTGGATCATA TATTTATTTTTTTGAGATTTCATTAATGGGTTATTTCCTCTCCGTGATTGTAAATACTGTTGTTCCTGAAGCTTGCTGGG AGTTTCAAAATTCACATTACGCAACATCTTGTAATCTTGACTGCTATTTATATTTCAGGGTCCTAGAATGGTTCGTGATG TATTTCGTCTTGCAAAGGAGAATGCCCCTGCAATTATATTTATCGATGAGGTTGATGCGATAGCTACTGCTAGATTTGAT GCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTCATGGAACTGTTGAATCAGGTATCTTTGAAATGATATTTCTA TCAGGTGCTGTGAATGTGATTCATAATGCATTTCAATGTACCAATACTAAGCTCTGCTGAGCCATATTGAGTTTTTCTTC CCATATCCTTAATCTCTGGCTCTTTAGATCGACTACCTCCTCATTGGTTTAGATATTCTCTAAAGTTCTGGTTTAACTAC CTGTTCTTTTCTTCAGATGGATGGTTTTGACCAAACTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTT TGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTT GTATTTCAGGCAAGTCTTTTGCATTTCTATATATTGTAATCTTAAGCTGTATCAAGTATCAACAGAATTCCATGTTTATA TTTCATGAGTGACAATTTTCAGTTTGCAGATTTTCATTTGCTTTAATATTCATTTAATCATTTATTCTCAGCTACTTTCC AGCCTATTATTTGATGATTTATTTTTTAACAGGTTTGCACTGCCAAAATGAACTTGGGTGATGAAGTAGACCTTGAGGAT TATGTTTCTCGACCTGACAAAATCAGTGCTGCTGAGGTTTGTTCATATCTAATCTGATAATTTTCATGATGTTAATTAGT TACGTAAGCTTACGTGGTATTAATGTCATGATCATAAATAATTAATCCAACTATTGAAGACTTTCAAAAACCTATCGTTT CACACTTCCATCATGCCGGCTTAAATCAACCATGAAATACTTACTTTGGGAGTGATTGGCCAGCTTCTTTCAGAAGCTCT TTGTCTCCATTTTGAGATATGTAGTTGAAGATTTGGGTGATATAAGATGCTGCTTTTAGCAGTTCCATTTGAACTGAAAA CTGTTATTTAAAAGAAAACTATTATGTTTATTTAATAAAGACACTTTATATTAGCTGAATGGCATTCCTTCATGGGATAT CGCGGAAGTTTAAGTTATTATTTTAGTAGCTGTTTTCGAAATCAAAATTTGTGTTGTTTAAATAGATTGGATTATGGGAA GATGAATTGTTATTTTTGTGAGAAGGATTATGATCTGTTGTTCTAACCTTGGAATGACGGACAGCTAATAAAAAAAGTGA TTTCCGTATGCTCTATACATTTAGCAAACTTAGATTTTAGCAGATGGGGAAAAATGATGAAAGGCATAACTATTTGATTG AATCATAGGGTTGTTTTACATGATCTTCTCATGAATAAGATGTATAGCTGATGAAAAACAAATCAACCTTACTACCTTTT CTGTGGCCTCAAAAGTAATCATTTCAGCTTTACACTAATAGAGGTAGCTGTGAAGAAAGACAAAAATGGAACTAAGTAGC ACTTTGAAATAGAATATTATCATCTCAGCAGTTATTTGTTTGGTATAATTGGTATTGGTTATTGGTGTCTGCAGATACAA GCTATTTGCCAAGAAGCAGGAATGCACGCTGTTCGTAAGAATAGATATGTCATACTGCCAAAGGACTTTGAGAAGGGTTA TAGGACAAACGTGAAGAAGCCCGATACTGACTTCGAATTTTACAAGTGATGATGAGGGTTTCTTGCATAGCTTTTTTATT TGTGTGATTATGCGTGGGACTGGAGAATGCATGCATAAATCTAGTGTAATTGTAGGCCATACCGATATTTATGATTATGA GAAATGTTGCAACATTTATGATTCTGGCAAACTTTTCATCTTACTATGTAATGTACATTATTTGATTTACCGAATAGATT AATTGTGGCAGCTTAATATTGAGTACTTACTGACTGCATGTCTTATTAGGGTTTGGAAAACCAAGTCTGAGCACTCTCAA AATTAGTATGAGTGGCTTCTGCCTTAAATTAGCCAATTTGTGTCTGATTTCCAATGGTGCAGATCTAATTTACCGGAGGT TTAGTTGGTACTTTGAGATTTTTTTTGCTAAACTTGATTAGATAAGTAAATTTTTATGAGGATTTGGATCATCTCATGTG TAAACTTTCCCATATGCATTAAATGTGTGCTAAATAGATAGGACCATATTAATGTTTATGAGGAGAGAAATCCCAGTTGC ATAACCCTTATGCTCTGTTTGGTTGTAGGAAGAGAAATTGATGAGAGATGATGGAAAGAGAGAAGTTTAACATAAAGAGA TGACAAAAATGTAG
CDS sequence (LotjaGi6g1v0045000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAGCCACCACCGTCCCTTCAGTCAGCGAAATCGGATTA CCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCTGAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATA TCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCGAGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATC CAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGACACGAACAACGGCATCGTTGGCTCCACAACGGGATC CAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCTCAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACT CCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTATCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTC ACTTACAATGACATTGGAGGGTGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGA TCTATACAAACAGATTGGTATTGATCCTCCTCGTGGTGTTCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTG CAAAAGCTGTGGCAAATCATACTACTGCGGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAG GGTCCTAGAATGGTTCGTGATGTATTTCGTCTTGCAAAGGAGAATGCCCCTGCAATTATATTTATCGATGAGGTTGATGC GATAGCTACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTCATGGAACTGTTGAATCAGA TGGATGGTTTTGACCAAACTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTTTGGATCCTGCACTTCTG CGTCCTGGAAGGCTTGATCGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGTTTGCAC TGCCAAAATGAACTTGGGTGATGAAGTAGACCTTGAGGATTATGTTTCTCGACCTGACAAAATCAGTGCTGCTGAGATAC AAGCTATTTGCCAAGAAGCAGGAATGCACGCTGTTCGTAAGAATAGATATGTCATACTGCCAAAGGACTTTGAGAAGGGT TATAGGACAAACGTGAAGAAGCCCGATACTGACTTCGAATTTTACAAGTGA
Protein sequence (LotjaGi6g1v0045000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSAMVLDPKPLSEPPPSLQSAKSDYLSGADADEDDLYSRLKTLQRQLEFIDIQEEYVKEEQKNLKRELLRAQEEVKRI QSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV TYNDIGGCDIQKQEIREAVELPLTHHDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE GPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKG YRTNVKKPDTDFEFYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 25 | 412 | 388 | 1.4E-244 | – | |
| PANTHER | 25 | 412 | 388 | 1.4E-244 | ||
| TIGRFAM | 45 | 399 | 355 | 3.3E-134 | ||
| Gene3D | 46 | 152 | 107 | 4.4E-28 | – | |
| Coils | 56 | 83 | 28 | - | – | |
| Pfam | 87 | 142 | 56 | 6.3E-9 | ||
| Gene3D | 153 | 333 | 181 | 2.1E-69 | – | |
| SUPERFAMILY | 158 | 402 | 245 | 1.51E-65 | ||
| CDD | 166 | 333 | 168 | 9.7561E-29 | – | |
| SMART | 196 | 335 | 140 | 1.5E-23 | ||
| Pfam | 200 | 333 | 134 | 3.1E-44 | ||
| ProSitePatterns | 303 | 321 | 19 | - | ||
| Gene3D | 337 | 416 | 80 | 2.3E-19 | – | |
| Pfam | 356 | 398 | 43 | 5.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. | ||
| Molecular function | Proteasome-activating ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
Expression pattern of LotjaGi6g1v0045000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…