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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045000 |
| Transcript ID | LotjaGi6g1v0045000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A151U9T4|A0A151U9T4_CAJCA 26S protease regulatory subunit 6B isogeny; Found in the gene: LotjaGi6g1v0045000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8446073..8448529) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAGCCACCACCGTCCCTTCAGTCAGCGAAATCGGATTA CCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCTGAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATA TCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCGAGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATC CAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGACACGAACAACGGCATCGTTGGCTCCACAACGGGATC CAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCTCAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACT CCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTATCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTC ACTTACAATGTCAGTAATTTCTTAATTTGGTTTTGGATTAGGGATTTCTTTTCACAAAATCTAGGGTTAAACTTGAATGC AACAGTTTCATTTTATTTAATCATGGTTTGCGGTTTGATTATAATGCTTAGGTCTTGCAAAAGTGAAATTTAGCTTTGGT GGTTGTGGTTTGAACTGTTTAGATGAAATCAAAATGGGAAAGGAAAGTTCTTTGGATTTGAAGAAAGTAATAATGCTGTG CAACATAATGATTACTTTGTTAAAGAAAAAATGAGGAAGTGATTATATTTGCGCGTTTCATTTTATGTAGCTTCTTGGGT TAGTAGTTGCTATATAAGCTAGAGAAGTATGTTCTTCTAGAGTTAGAGTGGGAGCCATAGATGAATGAGCTTGGGAAGTT CTCTTAATTCTTTATTTGTAGCTTGGAATCTTGGATTGTGACGCCACGCCAGAGGTTGTAAACATTGCTGATTAGATATT CGTTAAGTTATATGCTAGATTGTATTGAGTCTAGGAGGTTGTAGGGTGATAGCAGTGAAACTCAGACTATAGGACTATCA TTGTGGATGGGTGGGAATTTTGACCTTCCAAGGAATGTGATGGTGTCTAATGAGGAAGACGATAGAGGTGATGAAGTGTA ATACAGGCACATTACTCATACAATTCTGCGGTATAATTTATCTTGGTTAAGTCAATGACACTGGTACTAAGTAGTATTAA CAAAATATACTTTTATAGCATGTTTGTTAGACCTTGTGTGTAGTATGTATTGTTTGTCATCATAAGCTATTTTTTTCATA TGGGCTGGCCATAGCATAATTCCCCCTTAATATGGTTTTGATCTTTGTAGGACATTGGAGGGTGTGATATTCAAAAGCAG GAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGATCTATACAAACAGATTGGTATTGATCCTCCTCGTGGTGT TCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTGCAAAAGCTGTGGCAAATCATACTACTGCGGCCTTCATCA GGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAGGTATGAATTTTATGACATTTACATGGGAAGTGGTGTTAA CTATGTTTTGCAACTTACTCTGCTATCTTTGTTTGCTTTTGAATATTATGGCTTTCAGGATCATGATTATTGATGTTATT GTGCTCTTTATATTTACTAATTTTATTTCAAATTTGTGGATCATATATTTATTTTTTTGAGATTTCATTAATGGGTTATT TCCTCTCCGTGATTGTAAATACTGTTGTTCCTGAAGCTTGCTGGGAGTTTCAAAATTCACATTACGCAACATCTTGTAAT CTTGACTGCTATTTATATTTCAGGGTCCTAGAATGGTTCGTGATGTATTTCGTCTTGCAAAGGAGAATGCCCCTGCAATT ATATTTATCGATGAGGTTGATGCGATAGCTACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTAT CCTCATGGAACTGTTGAATCAGGTATCTTTGAAATGATATTTCTATCAGGTGCTGTGAATGTGATTCATAATGCATTTCA ATGTACCAATACTAAGCTCTGCTGAGCCATATTGAGTTTTTCTTCCCATATCCTTAATCTCTGGCTCTTTAGATCGACTA CCTCCTCATTGGTTTAGATATTCTCTAAAGTTCTGGTTTAACTACCTGTTCTTTTCTTCAGATGGATGGTTTTGACCAAA CTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGAT CGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGCAAGTCTTTTGCATTTCTATATATT GTAATCTTAAGCTGTATCAAGTATCAACAGAATTCCATGTTTATATTTCATGAGTGA
CDS sequence (LotjaGi6g1v0045000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAGCCACCACCGTCCCTTCAGTCAGCGAAATCGGATTA CCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCTGAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATA TCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCGAGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATC CAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGACACGAACAACGGCATCGTTGGCTCCACAACGGGATC CAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCTCAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACT CCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTATCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTC ACTTACAATGACATTGGAGGGTGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGA TCTATACAAACAGATTGGTATTGATCCTCCTCGTGGTGTTCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTG CAAAAGCTGTGGCAAATCATACTACTGCGGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAG GGTCCTAGAATGGTTCGTGATGTATTTCGTCTTGCAAAGGAGAATGCCCCTGCAATTATATTTATCGATGAGGTTGATGC GATAGCTACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTATCCTCATGGAACTGTTGAATCAGA TGGATGGTTTTGACCAAACTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTTTGGATCCTGCACTTCTG CGTCCTGGAAGGCTTGATCGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGCAAGTCT TTTGCATTTCTATATATTGTAA
Protein sequence (LotjaGi6g1v0045000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSAMVLDPKPLSEPPPSLQSAKSDYLSGADADEDDLYSRLKTLQRQLEFIDIQEEYVKEEQKNLKRELLRAQEEVKRI QSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV TYNDIGGCDIQKQEIREAVELPLTHHDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE GPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL RPGRLDRKIEFPLPDRRQKRLVFQASLLHFYIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 25 | 345 | 321 | 2.6E-204 | ||
| PANTHER | 25 | 345 | 321 | 2.6E-204 | – | |
| Gene3D | 43 | 156 | 114 | 3.4E-28 | – | |
| TIGRFAM | 45 | 343 | 299 | 4.0E-118 | ||
| Coils | 56 | 83 | 28 | - | – | |
| Pfam | 87 | 142 | 56 | 4.9E-9 | ||
| Gene3D | 158 | 333 | 176 | 1.3E-69 | – | |
| SUPERFAMILY | 158 | 346 | 189 | 5.12E-56 | ||
| CDD | 166 | 333 | 168 | 1.51332E-28 | – | |
| SMART | 196 | 335 | 140 | 1.5E-23 | ||
| Pfam | 200 | 333 | 134 | 2.2E-44 | ||
| ProSitePatterns | 303 | 321 | 19 | - | ||
| Gene3D | 334 | 345 | 12 | 1.3E-69 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. | ||
| Molecular function | Proteasome-activating ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
Expression pattern of LotjaGi6g1v0045000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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