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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0063000 |
| Transcript ID | LotjaGi6g1v0063000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G39720.1 RING-H2 finger C2A; Swiss-Prot: sp|O22283|RHC2A_ARATH Probable E3 ubiquitin-protein ligase RHC2A; TrEMBL-Plants: tr|V7CZ69|V7CZ69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0063000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11598429..11599623) extracted from Lotus japonicus Gifu genome v1.2.
ATAGATGATGTCTTCTGGGACATCTTCATATTGGTGCTACAGGTGCAGTCGCTTTGTGAGGGTGTTTAGACAGGACACGG TGGCATGCCCTGATTGCGAGAGTGGATTTATTGAAGAGGTTGACCATCCAGCGGCGCGTTCTGTCCACGCGGATTCCCGC CGCCGGAGGTTTCCTGCTGCGGCGATGTACATGATCGGCCAACGTCCCGGTTCTGATCAGACTTCGCGTCCCTCTGGTTT GCGCCGAACGCGCCGTAACGGTGGTGAACGGTCGCCGTTTAATCCGGTGATTGTCCTCCGCGGCGCCGCCGCCGCCGCGG AGGAAGGGGAGAGTCGAGGGTTTGAGCTGTTTTATGATGATGGGTCTGGTTCTGGTCTTAGGCCTCTGCCGCCGAGCATG TCTGAGTTTCTTCTGGGATCTGGGTTTGATAGGCTTCTGGAGCAGCTTTCTCAGATTGAGATTAATGGTATTGGGAGGTA TGAGCATCCTCCGGCGTCGAAAGCGGCTATCGATTCGCTACCGACGATTGAGATTGATTCGGGTCATTTGGCTATGGAAT CTCATTGTGCTGTTTGCAAGGAGGCTTTTGAGATGGGAGCTTCGGTGAGGGAAATGCCTTGTAAGCATATATATCATCCT GAATGTATTTTGCCGTGGCTCGCGCTTCATAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGTTGATGCTGCTCCGAG TCCACAACCGGCACCGGTAACAGGGCAATCTGTTCCTGTGAGTGAGGAGGAGAATGTGGGGTTGACGATTTGGAGGTTGC CTGGTGGTGGTTTTGCTGTGGGGAGATTTTCTGGTGGGAGGAGAGGGGCTGAGAGGGAGCTTCCTGTTGTATACACTGAA ATGGATGGTGGGTTTAACAATGGGGGTGGTGAGCCGAGGAGGATTTCTTGGTCTTCTAGAGGGAGTAGAGGGAGGGAGAG TGGAGGGTTTGGGTTTGGTTTGGGGAGGATGTTTCGAAATTTGTTTGGTTGCTTCAGAGGTGGTAGTGGTGGTGGTGGTG ATGGAGGAGTTGGAACAGCAACGCAGCGCTCTACTTCTACTAGAGAGTCTCGGTCATTGAGGGCGAGTTCATCTCGTTCT AGTACTAGGGATCCTTCACCGCGATCACGCAGGACTTGGTCTATGGATGTCAATAGTGGAATGAGAGCATGGTAA
CDS sequence (LotjaGi6g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCTTCTGGGACATCTTCATATTGGTGCTACAGGTGCAGTCGCTTTGTGAGGGTGTTTAGACAGGACACGGTGGC ATGCCCTGATTGCGAGAGTGGATTTATTGAAGAGGTTGACCATCCAGCGGCGCGTTCTGTCCACGCGGATTCCCGCCGCC GGAGGTTTCCTGCTGCGGCGATGTACATGATCGGCCAACGTCCCGGTTCTGATCAGACTTCGCGTCCCTCTGGTTTGCGC CGAACGCGCCGTAACGGTGGTGAACGGTCGCCGTTTAATCCGGTGATTGTCCTCCGCGGCGCCGCCGCCGCCGCGGAGGA AGGGGAGAGTCGAGGGTTTGAGCTGTTTTATGATGATGGGTCTGGTTCTGGTCTTAGGCCTCTGCCGCCGAGCATGTCTG AGTTTCTTCTGGGATCTGGGTTTGATAGGCTTCTGGAGCAGCTTTCTCAGATTGAGATTAATGGTATTGGGAGGTATGAG CATCCTCCGGCGTCGAAAGCGGCTATCGATTCGCTACCGACGATTGAGATTGATTCGGGTCATTTGGCTATGGAATCTCA TTGTGCTGTTTGCAAGGAGGCTTTTGAGATGGGAGCTTCGGTGAGGGAAATGCCTTGTAAGCATATATATCATCCTGAAT GTATTTTGCCGTGGCTCGCGCTTCATAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGTTGATGCTGCTCCGAGTCCA CAACCGGCACCGGTAACAGGGCAATCTGTTCCTGTGAGTGAGGAGGAGAATGTGGGGTTGACGATTTGGAGGTTGCCTGG TGGTGGTTTTGCTGTGGGGAGATTTTCTGGTGGGAGGAGAGGGGCTGAGAGGGAGCTTCCTGTTGTATACACTGAAATGG ATGGTGGGTTTAACAATGGGGGTGGTGAGCCGAGGAGGATTTCTTGGTCTTCTAGAGGGAGTAGAGGGAGGGAGAGTGGA GGGTTTGGGTTTGGTTTGGGGAGGATGTTTCGAAATTTGTTTGGTTGCTTCAGAGGTGCTTCTACTAGAGAGTCTCGGTC ATTGAGGGCGAGTTCATCTCGTTCTAGTACTAGGGATCCTTCACCGCGATCACGCAGGACTTGGTCTATGGATGTCAATA GTGGAATGAGAGCATGGTAA
Protein sequence (LotjaGi6g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSSGTSSYWCYRCSRFVRVFRQDTVACPDCESGFIEEVDHPAARSVHADSRRRRFPAAAMYMIGQRPGSDQTSRPSGLR RTRRNGGERSPFNPVIVLRGAAAAAEEGESRGFELFYDDGSGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYE HPPASKAAIDSLPTIEIDSGHLAMESHCAVCKEAFEMGASVREMPCKHIYHPECILPWLALHNSCPVCRHELPVDAAPSP QPAPVTGQSVPVSEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGGEPRRISWSSRGSRGRESG GFGFGLGRMFRNLFGCFRGASTRESRSLRASSSRSSTRDPSPRSRRTWSMDVNSGMRAW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 334 | 328 | 6.7E-134 | – | |
| PANTHER | 7 | 334 | 328 | 6.7E-134 | – | |
| Pfam | 8 | 38 | 31 | 3.3E-12 | ||
| MobiDBLite | 64 | 92 | 29 | - | – | |
| Gene3D | 154 | 235 | 82 | 5.0E-20 | ||
| SUPERFAMILY | 168 | 235 | 68 | 2.24E-20 | – | |
| Pfam | 187 | 229 | 43 | 5.6E-11 | ||
| CDD | 188 | 229 | 42 | 6.12615E-25 | – | |
| SMART | 188 | 228 | 41 | 4.2E-6 | ||
| ProSiteProfiles | 188 | 229 | 42 | 12.061 | ||
| Pfam | 258 | 363 | 106 | 1.4E-39 | ||
| MobiDBLite | 295 | 317 | 23 | - | – | |
| MobiDBLite | 345 | 379 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi6g1v0063000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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