Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0132000 |
| Transcript ID | LotjaGi6g1v0132000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A072TPS6|A0A072TPS6_MEDTR E3 ubiquitin-protein ligase RNF144A-like protein, putative; Found in the gene: LotjaGi6g1v0132000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:37957823..37960565) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATTCATTTCCATAATCGATGTGCCCTCTGCTCTGCTCTGTGTACGAGCTTCACCGCTCACCATGATAGTCACTTC AAACACCGTAAACCCTCCAAAACACACAACACCAAGACCTCCTCATCTTCGGAGAAACCAAACCGTCGCCGGCAACAACC GCCACCAAATTGCCCTCCGCGAACGTCTTCAGAAGAAGAATGCAATTGAAATGACTGGACCCGCGAAAAAGATGACGAAG AGAAAATCTCGTTCCAACGATCGTGATGAAAACAAGAAGAAGAAAACAGGCACTGTGATAGAGACGGAAGAAGAAGCTTC TGGCGTCGTCGTGAAGCCAGAGAAACAGAACGGAGGCAAGAACAGACACGTGATCAAGGCGGAAGAAAACAACAGCAACG GCGTCGTAAATTTCAACAACCGTTGCTTATGCGGTATATGCTTCGATTACAAGAAAGATTCTGAAATGTTCAGAGGGAGC AAGTGCGAACACCCCTTTTGCTCTGATTGCATTTCTAAGCATGTCGCTGCTCAAATTCAGCAAAATAATCTCAAGGTGAA TTGTCCAAACCCTAATTGCGACGTCGAATTGGGGCCGGAACATTTGAACCTGATTTTGCCTAAAGAAGTTGTTTTTAGAT GGGAATCATTGAGGTGTGAGTCTTTGATTGCTGGGTTGCAAAAGAGTTATTGCCCCTTTAAGAATTGCTCAGTTTTGATG GTGGATGATGGGGGTGAAATTGTGACCAATGCTGAGTGCCCTTCTTGCCACAGGCTGTTCTGTGCACAATGTATGGTTCC TTGGCATGCAGGGATGAATTGTGAGGAATTTCAGAAGTCTGGAAGGGTAAAAGGTGAAGAAGATTTAGAGAAGAAGTTTC TGAAGTTGGCTAAAAGAAAAAAGTGGCAGAGGTGTCCCAAATGCAGCTTCTATGTCCAAAGAAGAAGTGGATGTGAACAC ATGAAATGCAGGTACTTGTGACCTTTAATCTTACTGATCCTTAATCATTTTTTTGTATCTCTTGTCTTTCAATTGATGCA TTTCATTAATGATTGGTAATAATTAATGAAAGTATGAGTGATTAACTGGTTATGCTTGTTTCCTCATTTTCTCTTTACAG GTGTGGATGCAACTTCTGTTACGAATGTGGCAAGGATTGGAAGCATGGACATATATGTGATAAACATAATTCCACATAAG ATTTCACAGGTAGCTTGGAACTCTTGACATACATAACTGAAATTTTGGTTGATAATCAATATGGTCAAAAATGAAAGATT TGCAATTATCAATTCTCTAGGATAAGATATTCCTTTTTGTATTTTCATACACCAAATTCTTGAGATCTATATGGTAGGTC AGTAGCTGTGTATGCATTTCTTATATAATTGTCATGTATGACCATGGCTAATTTGGTCATTAATGAGATTTCAAGTTTCA TATAGGGTTTGAATTTCCAATTATGCTACACATCTGATCTCATGTAAATGAAAAGAAAGAAAGTGTAGTTTGTATAATTG TCTTGGTGTTTATGGAAACTTGGCAATAGACATTATTTGGCATTGATAAGCTGTAGCATAAAAAAAACTTGTTAATTAGG CACCTATATATCTCATGATTTGTCATTCTAGAAAGAGATAGCAAGTAATCAGGTGAGGGGAAATGGAAGAGGGGAAATAG AATCTGAGTAGCAGAACAGGGAAATTATGGTATGTGGTGATAGTAGCTGATAGGTTGGCCGTTTTTATGGCTGAGGCTTT CCTTATTTTCAGGTGACATTTCATCTTTTTGTTTGCTGCTTCTCACCACCATCCCAATGTTTTCCATGAATAACTATTCC TCCTTATAAGTACTAGTTTTCGCTCTTTTTTTACCAATGCAGTTCCTGTTAAATTAATGAAATTACCACTGAATTCCATC GATGGAGCTGGCAGGAACAGTTGGTAAAATTCAATTCAACTACCATTCATGGCTAGTAGTATTAATATGATTTCCATGAG TATTTATCCAAAGCATTTTGTTTTTTCATTATTGATTATAATGATTTAAGGTGTATTTAGGTCAACAACTTAAATAAGGA CTTATGAAAATAAGCATCTATTTATAAGCTAATTTGAGATTAGTTATTGAAATAATAGAAAAATAAGTTGTAGGTAAGCA TAATCTCTTATTAATGTAAACAACTTATGAAAATAAGCTAACCTATGCCATAAGCTATTTACGTAAGTCCTCTCAAACAC TTACGTAAACGTTTATATTATAGATTAAATCAATTTAGATCAAATAAGCTCTTCCAAACAGGCTTTAGTAACCATTGACA TTATAACAACGAGTTTGCAACAATGAAACTCTGTTTTGGTGATTCAATTTCTTCATGTTTTAAACTGATTCTAATTGAAA TATGCTATGCTTATAACAGGTGGCAGAATAGTTGGAAGTTCGTGTGGCGACATTCAGAAGGTCTATTATTCGTTTTTTGG TTAACAGAAGGTGTATTTAGTCACAATGAAACTATTTTTTCTTTTTGTACAGTTTTTAGCTGTATGACAATGAATGGGCT TAAATGTCTATCAGACTTTGGAACCGTTTTTGGTGCAAATGATATCTTTGGTGCAAATGATATCAGCAAAATATAAATGC AAACAAAATTTTGTTTGATGTTTTGGGAGTGTCGTTCTCCTTGCTCTACCCGCATGTAATTTTCATTTTCAGGCTTATTC CCTTCTTATAAAAAAAAGATAAA
CDS sequence (LotjaGi6g1v0132000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGTCACTTCAAACACCGTAAACCCTCCAAAACACACAACACCAAGACCTCCTCATCTTCGGAGAAACCAAACCGT CGCCGGCAACAACCGCCACCAAATTGCCCTCCGCGAACGTCTTCAGAAGAAGAATGCAATTGAAATGACTGGACCCGCGA AAAAGATGACGAAGAGAAAATCTCGTTCCAACGATCGTGATGAAAACAAGAAGAAGAAAACAGGCACTGTGATAGAGACG GAAGAAGAAGCTTCTGGCGTCGTCGTGAAGCCAGAGAAACAGAACGGAGGCAAGAACAGACACGTGATCAAGGCGGAAGA AAACAACAGCAACGGCGTCGTAAATTTCAACAACCGTTGCTTATGCGGTATATGCTTCGATTACAAGAAAGATTCTGAAA TGTTCAGAGGGAGCAAGTGCGAACACCCCTTTTGCTCTGATTGCATTTCTAAGCATGTCGCTGCTCAAATTCAGCAAAAT AATCTCAAGGTGAATTGTCCAAACCCTAATTGCGACGTCGAATTGGGGCCGGAACATTTGAACCTGATTTTGCCTAAAGA AGTTGTTTTTAGATGGGAATCATTGAGGTGTGAGTCTTTGATTGCTGGGTTGCAAAAGAGTTATTGCCCCTTTAAGAATT GCTCAGTTTTGATGGTGGATGATGGGGGTGAAATTGTGACCAATGCTGAGTGCCCTTCTTGCCACAGGCTGTTCTGTGCA CAATGTATGGTTCCTTGGCATGCAGGGATGAATTGTGAGGAATTTCAGAAGTCTGGAAGGGTAAAAGGTGAAGAAGATTT AGAGAAGAAGTTTCTGAAGTTGGCTAAAAGAAAAAAGTGGCAGAGGTGTCCCAAATGCAGCTTCTATGTCCAAAGAAGAA GTGGATGTGAACACATGAAATGCAGGTGTGGATGCAACTTCTGTTACGAATGTGGCAAGGATTGGAAGCATGGACATATA TGTGATAAACATAATTCCACATAA
Protein sequence (LotjaGi6g1v0132000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVTSNTVNPPKHTTPRPPHLRRNQTVAGNNRHQIALRERLQKKNAIEMTGPAKKMTKRKSRSNDRDENKKKKTGTVIET EEEASGVVVKPEKQNGGKNRHVIKAEENNSNGVVNFNNRCLCGICFDYKKDSEMFRGSKCEHPFCSDCISKHVAAQIQQN NLKVNCPNPNCDVELGPEHLNLILPKEVVFRWESLRCESLIAGLQKSYCPFKNCSVLMVDDGGEIVTNAECPSCHRLFCA QCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKWQRCPKCSFYVQRRSGCEHMKCRCGCNFCYECGKDWKHGHI CDKHNST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 41 | 77 | 37 | - | – | |
| PANTHER | 53 | 325 | 273 | 1.4E-99 | ||
| MobiDBLite | 53 | 77 | 25 | - | – | |
| PANTHER | 53 | 325 | 273 | 1.4E-99 | – | |
| Gene3D | 117 | 203 | 87 | 1.7E-20 | ||
| ProSiteProfiles | 118 | 327 | 210 | 28.19 | – | |
| SUPERFAMILY | 118 | 200 | 83 | 1.29E-15 | – | |
| Pfam | 122 | 167 | 46 | 6.8E-5 | ||
| ProSiteProfiles | 122 | 167 | 46 | 10.011 | ||
| ProSitePatterns | 140 | 149 | 10 | - | ||
| SMART | 190 | 252 | 63 | 1.2E-13 | ||
| Pfam | 193 | 252 | 60 | 4.9E-11 | ||
| SUPERFAMILY | 203 | 258 | 56 | 1.96E-9 | – | |
| Gene3D | 262 | 327 | 66 | 1.7E-8 | – | |
| SMART | 265 | 321 | 57 | 0.13 | ||
| SUPERFAMILY | 271 | 325 | 55 | 2.12E-12 | – | |
| Pfam | 274 | 319 | 46 | 1.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0132000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…