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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0181200 |
| Transcript ID | LotjaGi6g1v0181200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|K7MRG5|K7MRG5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47323437..47328010) extracted from Lotus japonicus Gifu genome v1.2.
CTCGAAATAAACTTTGGAACAAAGTTGTTTGCGACGTGGAGAAACTTCATTTTTTACAACAGTTAATTCAGATCACATGT CACAAATTTCTTTGTTGCTGATGCTCTTACCAATAAATTTCTTCACCGATTTCATCAACAATCACCTCTTGGCTCTTGCT GGTTCAATCCCACAAAATTGTTCATTGATGGCTACGGCATTTGCCTCATCTTCTCCAGTCCAAAAAACCACGTGTCACTG GGCATTCAATTTCGATTACCACCTCCCCATCCCACCGTCGGTTCTCACAACCACAATTGCCTTCCGCCGTCGCAACACGA CAGTCAAATGCTCCGGCGGCGCCTACGACGTCATCATTGTCGGCGCCGGGGTAACTGGTTCTGCTCTTGCTCACACCCTT GCCAAGGTAAGGGAGATGTCAATTTATATTAATCACAAATGGATAGATTGGTTGCAATATGTTGACACAATTAAACTGCT TTGTTGAATTTAATGAAGGTAGCATTTTCTGTTTGTAATCATGTTTGTGCACAAGCTAGAACCAGAACCACTATAATGAT GTCAATTTGCAACACTTTATGTACCCGTAATATTATATAGCTATTTTTTTTTTGAAACTATTATATAGCTATAGTTGGTA ATGTCTACATGTAAAATATTAGGCTTGAAATAGACAAAAAATGAATTCTAATTTGAATGTTAGAATATGGTATCTGTGTT ATGAATATGGATTGTCTATTACAGTTCAATCAATGGTATGGTTTCTTCTCTTGCTTTTACTTCTAAGGAACTAGATTAGA ACCACATGATAAATGAATAATGTTTGGATTGGTTACCATCAAGATCCTCAATAAGCATGCATGTATTCAATTTTTTGAAG GATGGAAGACGTGTCCATGTTATTGAGAGAGACTTGAGAGAGCCAGACAGAATTGTTGGCGAACTTCTCCAGCCAGGAGG GTACCTGAAGCTAATTGAACTGGGATTACAAGGTATATATCGAATTCAATCGCATGCTAGATTATTCTGGGGCTAAGGTT GGAGATGGTCTCTTTTTCTGATCATATAGATATCCAAATATCTGATACATTTTGCTAGGTAACTAATATCTTGTTTGGAG AAATTTATGTGCCCATCCCCTTTACTCTTCTGTTATATATTCAGTTTATTCTGTTTTCTACTAGCTGTTTTCTATGAGAA TCAATCCATTAGACTCTCAATCACCAACCTCAACCCTTATCTTTCTAGGTGATGTGGTCTATATGGACCAATCAATGTCA TTCAACTCTATGAGGATGCAAAGTTTCAGTTAAACAATCTAGAGTTAGGTCCTTAGAATGGTTTCTCTTGATGCATACTT TGGTCTTCCTCCATCTCTCTGACTATCTATCATTTGATCCACTTACCTCATTGGGATAGCTGTTGATCTTTTGGCTTGAC CTGACAATCTTAAGCAACACTTAGTTCTCTATTCAATAAGTGCTACTCTAACTTTCTCTTGGATTCAATTTTTTTGTCTG TATATCTACTCATCCATTTTAACACATTCATCCTCGCTACACTTGATTTGCACTCATGTCATCATTTCACCAGCCGACAT TCACTACAACGGAGCATTGCTAACCATCATTTTGTAGGCCCTTGTAAAGGGAAAAAGGATATAGAACTGTGTATTAGTAT TAATATTGTTTTCATGATAAATTGATATTGTTTTCAAGGCTATCGTTTGTTTCTCATAGGAGTTTATTTTATTATGTATT CTACATAGCTTCTATTGCAGAAAAGATAATAGAATCTCATGTTAGTTGGTTTAGGAAAATATGGAGAAGACCCATAGAAG CATTGCTAGGAAGGGTTGACCAAATGATGAATAATCCAATCTTTAGAGATAGAGAGATAGAAAAATATCTTCCTTCAATC ATTAGGAGATATATAGGGGTAAAATATCCATCTTTGAACTTAATATGTGACTAAGAATTATGGTGTTATTTGATCCATAT ACCTGACTCCACCTGGTGGGAAAAGGCTTGATGCTGTTTTGCCACTAACATTGGGATAAGCTCAATGGTGGATGAAGTTA AGCTTGCTGTCAGATACAATTTTTTTTTAAAGTTAATGTTTTGAAATGTGCTGCATATATTCTTTTGTGTCAGATTGCGT GGAGCAAATTGATGCACAAAGGGTGTTGGGATATGTTCTTTTCAAGGATGGGGAGAGTACTAATCTTCCTTATCCCTTGC AAAAGTTTCATGCTGATGTGACTGGTAAGAGCTTTCATAATGGGCGGTTTATACAGAGGTTGAGAGAAAAAGCTGCTGCT CTCCCCAAGTAATCCCTCTTCCTCTATTGTAATTTTTTATTTAATTATTAGAAGTGTTTGATTGGCTCCAAAATAAGCTG AAAGCTCGTTAATTTTCCATTAAATTGCTGTTTTTGCAGTATTCTTTTTGCCTGATTTATATGCTTTATTTACTACTCAG TGTACAAATGGAGCAAGGCATTGCAACTTCTCTTCTTGAAGATGATAATAAAACCATTATAGGGGTCCATTACAAAACTA AAGATCGCCAAGAGTTCAAAGCTTATGCTCCCCTCACAATTGTTTGTGATGGCTGTTTCTCTAATCTGCGTCACTCTCTC TGCCACCCCAAGGTTGAATTTTCTTGTAAATAAGTTTAAAGACAAAATACTACTTTTCATTTATACTGTGGTCAGATAGC ATGCTTATGCTTATAGACTCCAGAGGATTTTGTCAGTTTTGCACGATATTGCTTGATTTTGCTAATAGAGTAATATTCAA TTCTATTGGTCACTTGCCAGGTAGAAGTTCCCTCTTGTTTTGTAGGTTTAATACTCGAGAATTGTCAACTCCCATTTCAA AATTATGGACATGTTATTCTAGCTGATCCTTCCCCTATCTTATTTTATCCTATTAGCAGCACTGAGATTCGCTGCTTAGT CGATATACCTGGTCACAAAGTTCATCCCATAAGTAATGGCGAAATGGCTGACTATCTGAAGACTATGGTGACTCCCCAGG TATCTGTTAGACACTGTTGATGTGTCATCTCTTGTAGTCTATAACTTCACAACTTTACTTGCCTTGCCTCAAATGAAGTA GCAACCCAAATATTTAACTTCTGCCTTCATCTTCCTTGGTGTCTTATGTTCTTTTTCTTTTGTCCAGATTCCTCCTGAGC TTCATGATGCTTTCGTATCTGCAATTAATAGAGGAAATATTAGAACCATGCCTAACGGTAGCATGCCAGCTGATCCTCGT CCTACCCCTGGAGCTTTGTTAATGGGTGATGCTTTCAACATGCGTCATCCTTTGACTGGTGGAGGAATGACAGTGGCACT CTCTGATATTGTTGTGCTACAAGATCTTCTTAAGCCACTCTGTGACTTAAATGATGCAGCCTCACTGTGCAGATATCTTG AATCCTTTTACACCTTGCGCAAGGTGAGCTTGTAAATTGGCTTTACGTTATTCAAGGGAAATCAGATTTTACACATCTTT TCTTGTGAATTGGTCCAAATAGAATGTCTTTTACATGATGAATGATGTTTGTTTGAAAAAATTTGTGGTGGTCATGATTT GTTGGAAACCATTATGGTAGTAATCGGACAGTAAACTTAGTTAGGATCTTTAATATTCACAGCATGTGGATTGGAGTTAG ATTAATTTTGGTGAGTTCCTCGTTCAAACGAATGTGGATTGGAGTTAGATTAATTTTGGTGAGTTCCTCGTTACTTTTCT TTGGTGTTGCAATCATGGAATGTGGCTTTTGTTGCCAAGTAATTTAACCCCCTTCTAGATATGATGTAGCTGACCCTACT ACCAACTTACATGACATGGTTCATTGTAGCATGTTTTTCTTATCTCCTAGCTGCTTGAATGAGTAAACAGTTGTGCAATT ATTTGATCATGCTGCTGCATCATAGTCCATCGTTCATGGAAAATTGCTCTATTTCATATTTCACAAATTAAGGGTTGAGG TTTTTTCTACACTAACTGTGAACATTATTGTAGTGATGAACGTTGACATGATTAGAGTTCTGTTATTCTTACCAGTTAAT ATCTTCCAGTGTGCATTAGGTATCATATTTCCCATCATCAAGGCTGAAGGAGTGAGGCAAACATTCTTCCCGGGAACCTT ACCGGCTTTTTATAGAACTCCTCCTGCTAGGTGATGCATCGAAGAGTCAGTGAAAGCTTGCAATGCTTCCCATGTTGGAT GTTTCAGTTAGTTTATGGCTTCAAATGAAGGCAAAGTTCCATGGATGCAAAGGACACTGCCTTATGCCACTAAGAATGGA TTAGAGATAAGGGATTTGAATAGTTGGTAGAGGGTCATCATGGCCATTCTCCTTTTCTACGAAATTGTATATATGTAACT TAATTTGACAACGCAATTGTTGATAACCTCTGTTCACAAAATAGTATTTATCAATAGATAAGATACGTACATTCAGATCT TACTCATGACACTCATATTTCTGTGGGAAAATCTCTGTCTAATGTATCTAGAAATTTGTACGTAAATTGTACCATAACTT AGAATGAACGGAGG
CDS sequence (LotjaGi6g1v0181200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAAATTTCTTTGTTGCTGATGCTCTTACCAATAAATTTCTTCACCGATTTCATCAACAATCACCTCTTGGCTCT TGCTGGTTCAATCCCACAAAATTGTTCATTGATGGCTACGGCATTTGCCTCATCTTCTCCAGTCCAAAAAACCACGTGTC ACTGGGCATTCAATTTCGATTACCACCTCCCCATCCCACCGTCGGTTCTCACAACCACAATTGCCTTCCGCCGTCGCAAC ACGACAGTCAAATGCTCCGGCGGCGCCTACGACGTCATCATTGTCGGCGCCGGGGTAACTGGTTCTGCTCTTGCTCACAC CCTTGCCAAGGATGGAAGACGTGTCCATGTTATTGAGAGAGACTTGAGAGAGCCAGACAGAATTGTTGGCGAACTTCTCC AGCCAGGAGGGTACCTGAAGCTAATTGAACTGGGATTACAAGATTGCGTGGAGCAAATTGATGCACAAAGGGTGTTGGGA TATGTTCTTTTCAAGGATGGGGAGAGTACTAATCTTCCTTATCCCTTGCAAAAGTTTCATGCTGATGTGACTGGTAAGAG CTTTCATAATGGGCGGTTTATACAGAGGTTGAGAGAAAAAGCTGCTGCTCTCCCCAATGTACAAATGGAGCAAGGCATTG CAACTTCTCTTCTTGAAGATGATAATAAAACCATTATAGGGGTCCATTACAAAACTAAAGATCGCCAAGAGTTCAAAGCT TATGCTCCCCTCACAATTGTTTGTGATGGCTGTTTCTCTAATCTGCGTCACTCTCTCTGCCACCCCAAGGTAGAAGTTCC CTCTTGTTTTGTAGGTTTAATACTCGAGAATTGTCAACTCCCATTTCAAAATTATGGACATGTTATTCTAGCTGATCCTT CCCCTATCTTATTTTATCCTATTAGCAGCACTGAGATTCGCTGCTTAGTCGATATACCTGGTCACAAAGTTCATCCCATA AGTAATGGCGAAATGGCTGACTATCTGAAGACTATGGTGACTCCCCAGATTCCTCCTGAGCTTCATGATGCTTTCGTATC TGCAATTAATAGAGGAAATATTAGAACCATGCCTAACGGTAGCATGCCAGCTGATCCTCGTCCTACCCCTGGAGCTTTGT TAATGGGTGATGCTTTCAACATGCGTCATCCTTTGACTGGTGGAGGAATGACAGTGGCACTCTCTGATATTGTTGTGCTA CAAGATCTTCTTAAGCCACTCTGTGACTTAAATGATGCAGCCTCACTGTGCAGATATCTTGAATCCTTTTACACCTTGCG CAAGTGTGCATTAGGTATCATATTTCCCATCATCAAGGCTGAAGGAGTGAGGCAAACATTCTTCCCGGGAACCTTACCGG CTTTTTATAGAACTCCTCCTGCTAGGTGA
Protein sequence (LotjaGi6g1v0181200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQISLLLMLLPINFFTDFINNHLLALAGSIPQNCSLMATAFASSSPVQKTTCHWAFNFDYHLPIPPSVLTTTIAFRRRN TTVKCSGGAYDVIIVGAGVTGSALAHTLAKDGRRVHVIERDLREPDRIVGELLQPGGYLKLIELGLQDCVEQIDAQRVLG YVLFKDGESTNLPYPLQKFHADVTGKSFHNGRFIQRLREKAAALPNVQMEQGIATSLLEDDNKTIIGVHYKTKDRQEFKA YAPLTIVCDGCFSNLRHSLCHPKVEVPSCFVGLILENCQLPFQNYGHVILADPSPILFYPISSTEIRCLVDIPGHKVHPI SNGEMADYLKTMVTPQIPPELHDAFVSAINRGNIRTMPNGSMPADPRPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL QDLLKPLCDLNDAASLCRYLESFYTLRKCALGIIFPIIKAEGVRQTFFPGTLPAFYRTPPAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 16 | 13 | - | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| Phobius | 29 | 462 | 434 | - | – | |
| PANTHER | 83 | 429 | 347 | 6.3E-214 | – | |
| PANTHER | 83 | 429 | 347 | 6.3E-214 | ||
| SUPERFAMILY | 90 | 430 | 341 | 3.82E-42 | ||
| Gene3D | 91 | 427 | 337 | 6.7E-41 | ||
| PRINTS | 91 | 113 | 23 | 3.1E-10 | – | |
| Pfam | 94 | 120 | 27 | 8.3E-6 | – | |
| Gene3D | 132 | 357 | 226 | 6.7E-41 | – | |
| PRINTS | 241 | 256 | 16 | 3.1E-10 | – | |
| Pfam | 242 | 431 | 190 | 1.6E-78 | ||
| PRINTS | 369 | 384 | 16 | 3.1E-10 | – | |
| PRINTS | 384 | 400 | 17 | 3.1E-10 | – | |
| PANTHER | 430 | 461 | 32 | 6.3E-214 | – | |
| PANTHER | 430 | 461 | 32 | 6.3E-214 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0181200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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