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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0202600 |
| Transcript ID | LotjaGi6g1v0202600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle protein; TAIR: AT4G30600.1 signal recognition particle receptor alpha subunit family protein; Swiss-Prot: sp|Q9DBG7|SRPRA_MOUSE Signal recognition particle receptor subunit alpha; TrEMBL-Plants: tr|A0A1J7GDN0|A0A1J7GDN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0202600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49982740..49987052) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAATTTGCAAAAGTAGTGCATATCCCACATATAAAACCACTGAACCAACATTCACAAATTCCAATTATTTTTTTCTT TTTTTTTTTTCTCCATCTTTTCTCGTTTTCTTTCATTCTCCGCAGGTTTCTGAGCTCCGAGGAAAACAACAGGTACCTTT CTTTCATGGCAACATGTTTTTCCAATTCTCTCAATTCCAACAATTTTTCCTGCGTAGATCGAATTTAATGTTTCCTGTTT CCTCCAATCATTATCAATCAGAATGTTCAATTTTTTGTCTGTCTTAGATTTTAGGATTTACCACAATCTGCAAATTCCAT AATCTTCATTTTCCTCTTATCATTGATTCTTCATTCAAAAAATAATTTGATTTTCATTATGATTGACAGCAGGGTATTTG CTAGTTATCAAGGATGTTAGAGCAGTTACTGATATTCACCAGAGGAGGTTTAATCCTCTGGACATGTAAAGAACTTGGGA ATGCTCTGAAAGGTTCACCTATTGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCCGGTGCCGCGTCGTTTAAC TATGATGCCCCTGGTGCTTCCTACACTCTCAAATGGACCTTCCACAATGAGCTTAGCCTTGTGTTTGTGGCTGTGTATCA AAAGATTCTTCATTTGTTGTATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAGGTTTATGATCCGACGA GGACTGCGTATGATGGATTTGATGAGACTTTTAGGCAGTTGAAGATGGAGGCCCTGGCTCGCGCTGAGGATTTGAAGAAG TCGAATCCGGTGGTGGGGAATGTGAAGAAGCAAGGAGGGCAGGGGAATAAGAATGGGTTTGAAGGAGGGAATAAGAAGAA GAGCGATGGTTCTGTGAAGAATGATGGTGGCGCGGATGGTGAGAATGGGAAAGGTCGTAAATTGGAGAACGGGCACTCCA ATGGAAATTTTGTTGCTTCTAAAGATACTAACATGAATAGTGTTAATGTGAATGGTAGAGAGAATACGAGCTCCGATGAT GTCGGGGCTTTTGATGTAAATAAGCTTCAGAAGCTTAGGAGTAAAGGTGGGAAGAAGACAGATACTGTTGCCAAGGCCTC CAAGGCAGAGCCAAACAAGAAGGTGACAAAGAAAAATAGGGTTTGGAATGATGCTGCGGTTCCTGAGAAGAAACTGGACT TTACGGATCATTCGGGTGAGGACGGAGATAGGAACATAGACTTTGTGGCTCCAATTCAAGGCGAAAGTATGATGGATAAA GAAGAGATTGTTAGCAGTGAAAGCGAGGATGAGGATGAGGAAGATGAGGATGCGGGGAAAAACAGCAAGCCTGGTACTAA GAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGGTAAGATTGCATTACGTACTCTTGGTATATTGTGCACTTTGCTAGCT TCATTGGCAAGATAGATTTGTTAAGTTGTCTGAATATCTCGCTGAATTTTTTTGTTTTTTAATTTATACTATATTATTAT GAGGTTGTTGTTCTCGTTCTTCAATTTCTTAACAGTTGATATATGACTGACTTTATATATTTTAGTTTGTACATGAAGAT CTCATTTTTTGTTGTTTTTTTTTTCTTGAGATACCTTGACATAGATGTTCTAGTGCTGTGTTTTACCTGAAACTTAGGAA ATAGGGTAGAGGAGGGGAACAAAATCAAATAGCTATTCTTGGTCTTGAAAGTTCTCTCTGGCATGATATCGAGTTTCATT TTGGATTTGATGGATGTTGTCCTGTTTCCAGTTTCCTTTTACTAAGATAAATAGATAATGCATTTCGGTTTGTTTGGATG GATGCAAATAACTTTTGCATACTACTTGACAGCTCACTTTGAAACCTAGTTTCATTTTTTAACATTTTTTATATCCTTTT TTTTTCAGTTTTTCACTGAAATGACTAATCATGATATTTTCACATTTCCTTTTACTCAGTATTGCTGGGAAGGCAAATTT AGAGAAGTCAGACTTGGAACCAGCTTTGAAAGCTCTTAAGGATAGACTCATGACCAAGAACGTGGTATGTGTTTCTACTC AACAGCATTTTTTTCCCCTTCGTATATGTTCTTAGTTACCCGTTGGGTCCGTCACCCAGCTAATATTGTTTGTATTCTGT GTTGTTTGTAGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAAAAAAGCTAGCTTCA TTTACAAGGATATCTTCAACAGTGCAAGTTAGTTTCTATCTTTTTTTCCCTATCTACATTTGGTCCTGTCTTCTCTTTTA AATAATATGTAATATTAATACTGATTGTCTGCTAAAAATATTAATGTAGGCTGCAATGGAAGACGCACTTGTTCGAATTT TAACTCCTAGACGCTCTATTGATATACTAAGAGATGTGCATGCTGCCAGGGAGCAAAGGAAACCATACGTCGTTGTATTT GTTGGTGTTAATGGTGTTGGAAAATCAACTAATCTAGCTAAGGTGTACTAAATCATATTCATTTTCCAATTCAAATTGAG ATTCCATTTTTAGGACATGCTTTTTAACCAGATCTGTGATCATGCAGGTTGCTTACTGGCTTCTACAGCACAATGTTAGT GTTATGATGGCTGCTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTCCGGACCCATGCTCGGAGACTTCAGGTTTA TATTGATTTAACTTCTTAAAGATTAGTGTAGTTTTTTAACCTTGATATTATTATTTTCTTAGGTCTTTGTCAAAACCTTT TACAAGAAGCATGTAGGCTTATAGTTTCCTTCTTTCAGATCCCCATATTTGAGAAGGGCTATGAGAAAGATCCTGCCATC GTGGCAAAAGAAGCAATTCAGGAAGCTTCACGCAATGGTTCAGATGTGGTTCTAGTTGACACTGCTGGTCGTATGCAGGT ATTGCTGCAGTTTGTGATCTGGGCAAGCATTTGCTAATTTTTTCTGATGTTTGGGTTATTTTTGAATTTTGCAAGTGTAT AAAAACAAGAAAATTGCTAGCAACACTCACTTTAACACTCTTTCAGTCTTACCAACACACTCTCATTGATTAGTTGGAAT TCATACGGGGTCCACTAAAAATATGAGTCTCCCTTACTATTTAGTGGGACCCACATGAATTTCAACCAATCAATGAGAGT GTTGAAGTGAGTATTGCTAGCACTAGACAATATCATACATTGATGCTGTCTGTTTCTGTTATAGTACTTCCAAACAATGA TCCTGCATATCTTGACAGAAGACCATTCTCATACTGGATTGGTTGCATGATTATGGCTATGGCTACATGTGTATGCTTTT ATGTTCATCTTGGATGTCACTGTTGATGATTTTCAGGATAATGAACCACTGATGAGAGCACTGTCAAAACTCATCTACCT CAACAACCCAGATCTAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAGTTCAATC AGGTCTGGTTCTATATTTTCTTCAATATTGTCCAGCAATAGCTTTTTTTTTTCTATTTGTATTTCCTATATATTTAACCT CAACTTCTTCACTGCAGAAACTTGCGGACCTCGCAACATCTCCTAATCCAAGATTGATAGATGGGATCTTGCTCACAAAG TTTGACACCATTGATGATAAGGTACATGAATTCTAAAGTTGTTCGGTGGATGATTATAAATGATTGGTTTTGCTGATGGT TGTATTTTTCAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCACCTGTCATGTTTGTGGGGTGTGGACAGTC TTATACTGACCTGAAGAAACTCAATGTCAAATCAATAGTGAAGACTCTCCTTAAATGAGGGGCACAATTTGGTCTATGTT AATGTTCCCTTGCAATGCTGTTCACCTGTCATGTGTGTTTTCTGTTTGATGATGAACTTGTTTGTTTATCCCCGTTGATC CCATAACATTACATTTTAGGAAAAACTCTGTGGCTGACTTTTGAGGCAATTTGGCTTTGTGTGTAACTGTGTATTACAAG GTTTTTATGGAGGATGGTTTACTTTTTTTTTTCAACCCAAGATTTCAAGATTCCAAGCGTGCAGCACTTTTTAGACTTCA CCAGCATCAATGATTTCTGGACATGCAAAGGAAATAGGGATGCATGACATAGACAAAAAGAAAACATTCGCCTCCTCATC AATTGACATACTTCATTGACCTAAATAGTTACCTCTCATATTTTTCTTGAAACCTAAATTGCAATAAAAGTAA
CDS sequence (LotjaGi6g1v0202600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGAGCAGTTACTGATATTCACCAGAGGAGGTTTAATCCTCTGGACATGTAAAGAACTTGGGAATGCTCTGAAAGG TTCACCTATTGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCCGGTGCCGCGTCGTTTAACTATGATGCCCCTG GTGCTTCCTACACTCTCAAATGGACCTTCCACAATGAGCTTAGCCTTGTGTTTGTGGCTGTGTATCAAAAGATTCTTCAT TTGTTGTATGTGGAGGATCTGCTTGCTATGGTGAAGCGCGAGTTTTCGCAGGTTTATGATCCGACGAGGACTGCGTATGA TGGATTTGATGAGACTTTTAGGCAGTTGAAGATGGAGGCCCTGGCTCGCGCTGAGGATTTGAAGAAGTCGAATCCGGTGG TGGGGAATGTGAAGAAGCAAGGAGGGCAGGGGAATAAGAATGGGTTTGAAGGAGGGAATAAGAAGAAGAGCGATGGTTCT GTGAAGAATGATGGTGGCGCGGATGGTGAGAATGGGAAAGGTCGTAAATTGGAGAACGGGCACTCCAATGGAAATTTTGT TGCTTCTAAAGATACTAACATGAATAGTGTTAATGTGAATGGTAGAGAGAATACGAGCTCCGATGATGTCGGGGCTTTTG ATGTAAATAAGCTTCAGAAGCTTAGGAGTAAAGGTGGGAAGAAGACAGATACTGTTGCCAAGGCCTCCAAGGCAGAGCCA AACAAGAAGGTGACAAAGAAAAATAGGGTTTGGAATGATGCTGCGGTTCCTGAGAAGAAACTGGACTTTACGGATCATTC GGGTGAGGACGGAGATAGGAACATAGACTTTGTGGCTCCAATTCAAGGCGAAAGTATGATGGATAAAGAAGAGATTGTTA GCAGTGAAAGCGAGGATGAGGATGAGGAAGATGAGGATGCGGGGAAAAACAGCAAGCCTGGTACTAAGAGCAAGGGTTGG TTTTCATCCATGTTCCAGAGTATTGCTGGGAAGGCAAATTTAGAGAAGTCAGACTTGGAACCAGCTTTGAAAGCTCTTAA GGATAGACTCATGACCAAGAACGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTGGCAGCAAGTCTTGAAGGAA AAAAGCTAGCTTCATTTACAAGGATATCTTCAACAGTGCAAGCTGCAATGGAAGACGCACTTGTTCGAATTTTAACTCCT AGACGCTCTATTGATATACTAAGAGATGTGCATGCTGCCAGGGAGCAAAGGAAACCATACGTCGTTGTATTTGTTGGTGT TAATGGTGTTGGAAAATCAACTAATCTAGCTAAGGTTGCTTACTGGCTTCTACAGCACAATGTTAGTGTTATGATGGCTG CTTGTGACACATTTCGATCAGGGGCTGTTGAGCAGCTCCGGACCCATGCTCGGAGACTTCAGATCCCCATATTTGAGAAG GGCTATGAGAAAGATCCTGCCATCGTGGCAAAAGAAGCAATTCAGGAAGCTTCACGCAATGGTTCAGATGTGGTTCTAGT TGACACTGCTGGTCGTATGCAGGATAATGAACCACTGATGAGAGCACTGTCAAAACTCATCTACCTCAACAACCCAGATC TAGTCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAGTTCAATCAGAAACTTGCGGAC CTCGCAACATCTCCTAATCCAAGATTGATAGATGGGATCTTGCTCACAAAGTTTGACACCATTGATGATAAGGTGGGAGC TGCACTTTCAATGGTTTACATATCTGGAGCACCTGTCATGTTTGTGGGGTGTGGACAGTCTTATACTGACCTGAAGAAAC TCAATGTCAAATCAATAGTGAAGACTCTCCTTAAATGA
Protein sequence (LotjaGi6g1v0202600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASFNYDAPGASYTLKWTFHNELSLVFVAVYQKILH LLYVEDLLAMVKREFSQVYDPTRTAYDGFDETFRQLKMEALARAEDLKKSNPVVGNVKKQGGQGNKNGFEGGNKKKSDGS VKNDGGADGENGKGRKLENGHSNGNFVASKDTNMNSVNVNGRENTSSDDVGAFDVNKLQKLRSKGGKKTDTVAKASKAEP NKKVTKKNRVWNDAAVPEKKLDFTDHSGEDGDRNIDFVAPIQGESMMDKEEIVSSESEDEDEEDEDAGKNSKPGTKSKGW FSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTP RRSIDILRDVHAAREQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK GYEKDPAIVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD LATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 126 | 126 | 1.6E-33 | – | |
| PANTHER | 1 | 624 | 624 | 4.9E-259 | – | |
| PANTHER | 1 | 624 | 624 | 4.9E-259 | – | |
| SUPERFAMILY | 1 | 120 | 120 | 2.2E-32 | ||
| CDD | 3 | 116 | 114 | 1.30034E-45 | – | |
| Pfam | 28 | 302 | 275 | 6.2E-64 | ||
| MobiDBLite | 131 | 245 | 115 | - | – | |
| MobiDBLite | 151 | 177 | 27 | - | – | |
| MobiDBLite | 182 | 212 | 31 | - | – | |
| MobiDBLite | 220 | 245 | 26 | - | – | |
| MobiDBLite | 282 | 318 | 37 | - | – | |
| Gene3D | 289 | 401 | 113 | 8.3E-26 | ||
| SMART | 316 | 398 | 83 | 0.0028 | ||
| SUPERFAMILY | 319 | 400 | 82 | 5.76E-12 | ||
| Pfam | 321 | 388 | 68 | 2.0E-7 | ||
| Gene3D | 403 | 625 | 223 | 4.1E-89 | – | |
| SUPERFAMILY | 416 | 624 | 209 | 1.31E-41 | ||
| SMART | 418 | 558 | 141 | 5.1E-8 | ||
| SMART | 419 | 625 | 207 | 4.6E-85 | ||
| Pfam | 420 | 624 | 205 | 1.2E-55 | ||
| CDD | 432 | 623 | 192 | 6.99023E-135 | – | |
| ProSitePatterns | 598 | 611 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Signal recognition particle binding | Interacting selectively and non-covalently with the signal recognition particle. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Signal recognition particle receptor complex | A transmembrane heterodimeric protein located in the membrane of the rough endoplasmic reticulum. Both subunits contain GTPase domains with which signal recognition particle interacts. In the presence of GTP and SRP receptor, SRP is released from the ribosome-nascent chain complex. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi6g1v0202600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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