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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0220400 |
| Transcript ID | LotjaGi6g1v0220400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A072VHQ2|A0A072VHQ2_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0220400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52402911..52405502) extracted from Lotus japonicus Gifu genome v1.2.
AGCAACCAAACCGCAGTGGCAGAGTGTGCTGCAGCAATGGAATATGAAGCACCCACCTTCTCCCTTTTCACTGAACCACC ACCACCTTCATCATCATCATCAATCACCAATCCCCAATTCCCAAATCTCCAAAACCCTAATCCCAATCCCATGACTCTGA ATCCCCAAACCAGAACCACAAGAAGAAGAAGAACCGTTCTTCCCCCTTCCATCGAAATCATCGACGTCGATTCCATCTCC TTCACCCGCCGCACGCCGCCCACCACCACCGTCATCGATCTCTCCGACACCGAAGACGACGACGACGACGACGTCAGAAT CCTCAATTTCATCCCCGCAAACACCCCTTTCGGCAAACGAATCAAAAAACGCCACACCGAGAAAGCCGAATCATCAAATG ACGCGCCGTTCACCTGCGAAATCTGCACGGACACCAAGACGGTGAGGGACTCGTTCGCCATCAGCGGCTGTTCCCACGCG TACTGCTCCGATTGCGTCGCCACCTACGTGCGGTCCAAGCTTGAGGAGAACGTGATCAACATCCGGTGTCCTGTTTCTGG ATGTTCAGGTTTGCTTGAGGCGGAGGATTGTCGCGCGATTCTCTCGCCGGAGGTGTTTGATCGGTGGGGGACGGCGACGT GCGAGGCGTTGTTTGCGGTGTCGGAGAAATTCTACTGCCCGTTCAAGGATTGCTCTACGCTGTTGATTGATGATGGGGCG GAGAAGGTTATGGAATCGGAGTGTCCTAATTGTAGGAGGATGTTCTGTGCGCAGTGTAAGGTGCCGTGGCATGATGGGGT TACGTGCGAGGAGTTTCAGAAGCTGGGGAAGGATGAGAGGGAGAAGGAAGATATGATGTTGATGAAGCTTGCTAAGGATC AGAAGTGGAAGAGGTGCCCCCATTGCAAATTCTATGTTGCAAAATCTGAAGGATGCATGTACATGAAATGCAGGTTAAGC TTTCATTTCTTCTTGCTCTGTTGAATTTGGTTGATGCCCTGATCAATTTTGACTAACCAAACATGACATAGATTCTGCAT ATTGCATAGTGGTTGAAGCTTGTGATTGAGGAATGAGGACTCATGATTGGGTACTGGCCTCTGTTTAGGTGTCAATTTTG TGGTGGGCACTTGCATATGTTTCTCTGATTGATAATGTGATGCTTCTTTCTTTATTATATTTAAGAAATTAACATGCATT TAGAGCTTGGTTTGGATGCTAGCATGTTGGCTTTGTTTCCATGTGCTGAAGAATCATGGCTTGGCTTGAGTTTGTTTTGT ATTCTTCATTTTTCCCATTTACTTCATCCATGTCACATGTCATGACAAAACTGGTTTGTTGTTATTTGGAGACAACTTGA TGGACTTGGAAATCTGTTTTGTTTTCACTTACTCACCACTTTTGTGTCTTTGGAACTAGCAACTATTATAATACATATAT CATCTTGTAAAGGGTTTGTAGCCATCACCACACACTACAAATATCTTTGAAGCATGAAATTCCTACATTTGATTATTATA TGGTGGTTGGTATGAGAGAGGTGGGCAATTGGTGGATTATTGTCAAATTCCAGTTACATTTGCAATGTGTTTGAATTTTC TTCTATTTTGGGTTGCAGGTGTGGACATGCCTTCTGTTACAACTGTGGAGCTCCTAACAAGAATCCCAGCCATCACTGCA ACAAGTGTCATCGCTAGCTACACTTGAAAGCAAGGTAACTTTAGGATCTAGATTTTGATTATGAGGTTTCCCACCGCGGA ACGAAACACACTATAAATTTTAATAAGTGCTATAATTGCTAATTGCGGCTAGTAGAGTTAAACCAAGAACTGAATGCAAG TTATCTGAACTCTTTCGTACTAACTCACACCTATTGACTTTATGTTGTGTATTATGATGTAAAGGTTATACCAACATAAT TTCCATTTTTTTGGGCGAGTTTGAGTGTGTAATGCCTATCTTTAGCAGCAATACAACAATTTAGAGTTTGTTTGATTTTA AGGTTGATAGAAATGACATCTTATTAACCCATTTTACATCATTTATTTTTCTATTTTTCAGATATGTAATATATTTTTTG CCTGGAGAAGACATTTGCAGTAAGCATTAGAAGATTATTGTATCTGACCACAATTAGGCCAGATATCATTTATGTACTTA TGGTATACAACAACTTTGCAAAGTTCTCAGATGGTGGAAGAAACTATCAGATCGATGCCTTGCTGATTCTGATATGCTTT TCTTTTAGTTTTTGGTCGAAAAACTAAGCTTTCAGTGACCGGAATTGAGCAGATATGGAGATACAATTGGGCCAACAGTG CATCCCTACTTAGATACTGTCAAGCTCAGAATCTTGGCCCAACATGATGACCAGCTCACATCATCTTAGTTTAGCCTAAT TGGATTTGATCATGAACTTATTATTGTGATAAATTATTTTCATTTTGGTTTAGTTATCTGGTTAGTTATGGAGTAGTTGT TTTAACTTAGATCCCATTGCGAAAAAAGTTGATTAAACCAGGAGGGGTGGATTAGTATTAACGTAATTTAAAGTTTTACT TTATGTGAAAAGTTTCTGCAAACGCATTTACA
CDS sequence (LotjaGi6g1v0220400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATATGAAGCACCCACCTTCTCCCTTTTCACTGAACCACCACCACCTTCATCATCATCATCAATCACCAATCCCCA ATTCCCAAATCTCCAAAACCCTAATCCCAATCCCATGACTCTGAATCCCCAAACCAGAACCACAAGAAGAAGAAGAACCG TTCTTCCCCCTTCCATCGAAATCATCGACGTCGATTCCATCTCCTTCACCCGCCGCACGCCGCCCACCACCACCGTCATC GATCTCTCCGACACCGAAGACGACGACGACGACGACGTCAGAATCCTCAATTTCATCCCCGCAAACACCCCTTTCGGCAA ACGAATCAAAAAACGCCACACCGAGAAAGCCGAATCATCAAATGACGCGCCGTTCACCTGCGAAATCTGCACGGACACCA AGACGGTGAGGGACTCGTTCGCCATCAGCGGCTGTTCCCACGCGTACTGCTCCGATTGCGTCGCCACCTACGTGCGGTCC AAGCTTGAGGAGAACGTGATCAACATCCGGTGTCCTGTTTCTGGATGTTCAGGTTTGCTTGAGGCGGAGGATTGTCGCGC GATTCTCTCGCCGGAGGTGTTTGATCGGTGGGGGACGGCGACGTGCGAGGCGTTGTTTGCGGTGTCGGAGAAATTCTACT GCCCGTTCAAGGATTGCTCTACGCTGTTGATTGATGATGGGGCGGAGAAGGTTATGGAATCGGAGTGTCCTAATTGTAGG AGGATGTTCTGTGCGCAGTGTAAGGTGCCGTGGCATGATGGGGTTACGTGCGAGGAGTTTCAGAAGCTGGGGAAGGATGA GAGGGAGAAGGAAGATATGATGTTGATGAAGCTTGCTAAGGATCAGAAGTGGAAGAGGTGCCCCCATTGCAAATTCTATG TTGCAAAATCTGAAGGATGCATGTACATGAAATGCAGGTTAAGCTTTCATTTCTTCTTGCTCTGTTGA
Protein sequence (LotjaGi6g1v0220400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYEAPTFSLFTEPPPPSSSSSITNPQFPNLQNPNPNPMTLNPQTRTTRRRRTVLPPSIEIIDVDSISFTRRTPPTTTVI DLSDTEDDDDDDVRILNFIPANTPFGKRIKKRHTEKAESSNDAPFTCEICTDTKTVRDSFAISGCSHAYCSDCVATYVRS KLEENVINIRCPVSGCSGLLEAEDCRAILSPEVFDRWGTATCEALFAVSEKFYCPFKDCSTLLIDDGAEKVMESECPNCR RMFCAQCKVPWHDGVTCEEFQKLGKDEREKEDMMLMKLAKDQKWKRCPHCKFYVAKSEGCMYMKCRLSFHFFLLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| MobiDBLite | 14 | 50 | 37 | - | – | |
| PANTHER | 78 | 313 | 236 | 1.1E-98 | ||
| PANTHER | 78 | 313 | 236 | 1.1E-98 | – | |
| Gene3D | 121 | 210 | 90 | 7.9E-21 | ||
| SUPERFAMILY | 122 | 204 | 83 | 3.53E-16 | – | |
| ProSiteProfiles | 123 | 315 | 193 | 24.889 | – | |
| Pfam | 127 | 172 | 46 | 3.7E-5 | ||
| ProSiteProfiles | 127 | 173 | 47 | 9.952 | ||
| ProSitePatterns | 145 | 154 | 10 | - | ||
| SMART | 195 | 257 | 63 | 1.9E-12 | ||
| SUPERFAMILY | 203 | 262 | 60 | 5.3E-8 | – | |
| Pfam | 210 | 257 | 48 | 7.9E-10 | ||
| Gene3D | 253 | 315 | 63 | 3.0E-7 | – | |
| SUPERFAMILY | 268 | 305 | 38 | 4.82E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0220400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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