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LotjaGi6g1v0247200.1

Overview

Field Value
Gene ID LotjaGi6g1v0247200
Transcript ID LotjaGi6g1v0247200.1
Lotus japonicus genome version Gifu v1.2
Description DNA helicase; TAIR: AT5G44635.1 minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|F4KAB8|MCM6_ARATH DNA replication licensing factor MCM6; TrEMBL-Plants: tr|A0A072TUF1|A0A072TUF1_MEDTR DNA helicase; Found in the gene: LotjaGi6g1v0247200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55943684..55949455) extracted from Lotus japonicus Gifu genome v1.2.

CAAGTTGGTGAGCCCAATATACAGGCCCAGAGATGTTAGGTTTTGGCGGGAAGACGTTGTTCCCTTTATCTCCATTTCCC GCCACAGAGAACACTGCAATCACTTTAGGGCTAAGCCAGAAGAAACCGAATCGCGCGCTCAAAACACGAATAGAGGAAAC CAGGGTTCGATTTGGAGTGAGGAAGAAGAAGAACGCCGAAGCAGCAAGTGAAAATGGAAGCTTATGGCGGTTACATGGTG GACGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGAATTTCTCAAAAGGTTCTTCATCTTCTTCTTCTTCACTATCTT CTCTACAATAATTGATGAAGTAACTGTTTCTGTTTTCGTTGATTCAACAGTTTCAGGACGAATCGGAACGAGCTCTGCTA CGAATCGGAGATTGAAGTGATGAAAGCCAATGAATCCAACACTATGTTCATCGATTTCGACCATGTCAGTAAATTCAGTA ATCACCTTGGTGAAGCTATCTTCGATGAATATTTGAGGTGATTATGATTTGTTCTTATTGAAACCCTAAATTTTCTAATT GTTTTTGGAAGGCACTGGCACTGAGAGTTGTTTTTCTGTGTTGTTGTTTGATTGATGATGATAGGTTTGAGCCTTTTTTG AAGAATGCTTGTTTGAGATTCGTCATGGAGCTGAAGCCGACGTTCATTTCTGATGATAACCCTAACAAGGACATCAATAT TGCTTTCTACAACCTTCCACATGTCAAGCGGTATCTCCATTTCTTTTGTCAATTGTGATGATATATTTAATTTTAATTTG GAAATTGAGGATTTGGAGTGTTTCAGTTAGCTATCAGTTTGTTGACCGGCGAATTTACACATTCAGGTTAAGGGAATTGG CTACATCAGAAATCGGGAAGCTTGTATCGGTGACCGGAGTGGTAACAAGGACAAGCGAGGTTCGACCGGAGCTTCTCCAA GGGACTTTCAAGTGCCTGGAATGTGGTGGTGTTATCAAGAATGTTGAGCAGCAATTCAAATACTCTGAGGTGGTTAACTG ATGATTATTGTTGTTTGTTTATTCAATTCTTGTCATATTTAGCAGTATCATGTTACCTGCTTGGAATTGGATTACAATTC ATTGTCATTATCTGTGTGAATTTTGATTTTTATTTGAGTATTATGGTTCTGATGTTATGATGCCACTCACTGCAGCCAAC TATATGTGTTAATGCGACTTGTAACAACAGAACTAAGTGGGCGCTGCTGCGCCAGGAGAGCAAATTTGCTGACTGGCAAA GGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCTTTGCCGAGGTCACTGGATGTTATTCTTCGTCATGAG ATTGTGGAACAAGCTAGGGCTGGTGACACGTGAGTCTTACTCTTGCCCCAAATTTGCTTGCACTAGTCAAAATATTGTAA GAATTTTACTTGTCAAATTAATCTGAAGGTCAAAATAACAATTCACTTACTGTCTCCCTGCAGGGTGATTTTCACTGGTA CTGTAGTTGTTATACCTGATATAATGGCATTGGCATCCCCTGGAGAAAGATCAGAGTGCCGGAGGGAAGCTTCTCAACGC AAGGGGTCTGCTGTTGGAAATGATGGTGTGAGGGGCCTCAGGGCTTTGGGAGTCAGAGACCTCTCCTATCGTCTAGCTTT TATTGCGAACTCTGTTCAGGTTGGTTATTTTGGCCTGTTATTGTAATGTACATGTAATGTGATATTGACCATGTTAGAGA TGTGATTTTGGAATTGTTTGTTTCAGATTTGTGATGGAAGAAGTGAAACAGACATCAGAAATAGAAAGAAGGATACAGAT GAAGATGATCAGCAGTTTTCTGTAAGTTCATGATGCACTCCATATATTTGCTTTATGTCACCATCTAGTTTTGGTTTGTT GTTGTCAGCTGTTGTGACCGTGCTACCTCTATTGTGAAACTTGTTGAGTTGATATAAAGAGCATCATTTGCTATTTCTAT TTACTTTAATCAGGTTACATATTTTAGGTTGATCAGTATTCTCCCTATCCTTCCCCAATTTTAAAAGAAGGGCAATCTGG TGCTGTAGAGCCCCCAATGTGGTGGGGTCTAGGGAAGAGTTGTACTGGGGCTCTATTGTGGGCAGCCTTATTTTCCATGT AATCCTGTATGGATTTTTTTGTTCATTTGCTTTTCTTTGTCATGTTTGCTGCAGATCTTAATCTCATAAGTTTTCTCCAA TGCATGACATACACAATGTAATTGTTCAGTCTTCTATTTTATATCTGAGAGAATATTTTTCCAATATATTTGGCTGGTTG ATTTGCAGGAACAGGAACGGGCTGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCAACAAACTTGTTGGGAGCATT TCTCCAGCTGTTTATGGTCATGCAGATATTAAGCGAGCAATCCTTTTTATGCTTATGGGCGGTGTCCACAAAGTAACTCA TGAAGGAATCAACCTCAGAGGCGATATAAACGTTTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTTCTCAAGT ACTCTCTCCGTTGGTTACTTTATCCTGGTTTATGCAAATTGAATGGCTTATATATGATAGTTCATCATTTCAGGTATACT TCAGGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGTTTGACTGCAACTGTTGCAAAGGA ACCCGAAACTGGAGAGTTTTGTATTGAGGTTAATAATCTTCAGCTCTTTTATACTAAGTGTAAAATTTGGTTGGGCTGTC AATTAAGGCAGGGGATGGGGCTGCCCTGGGAGATATTAAGTATTTAAGTTCCCAACTATTTGCAAACTTTCATTGTTTAT TTTTCGTATGTGTTTTATTATGTTATATAGTTTCTTCTTTGTATGTTTTAGTAAAAACAATGTATAGAATTTCCTACTTC ATGTTAGATTAAAATAGTCTAAAATCATCTCTAATTCTCTATTAATCGATAAAGCATGTTAAGAGGACTGGAACTGCTTT AAGTTGAAATTACTCTCGGGAAAAAAGTGAATCAAGAAATAATAAATGTTACACACACTTACGAAGAATAGAGACAGGAG GTATTTTTGTTTCTCATCAATATGTTCTGCACATTATAGGCATCTCTACCCATCATCTTTGATTGGGAATTCTAATCATT GCACGTTGTTTGCATTTTTTCAATTCAGAATTTTATGTTTAGTCCCCATTTAAAGTGTAGTATAAAAACTATTTATGATA CTTGACTTAGTATTGCCTGAGTAGTGAGTAGGCAATAAAAAAACTGCAAAGGAGAGAGGGTTTTAATATCTCCAGTCATT ATAATATTCGCCACTGTCTTGTTTAAGTATACAATAAAGATCTTGTTTTCAGGCTGGTGCTTTGATGCTTGCGGACAATG GCATTTGCTGCATCGATGAATTTGACAAGATGGATATCAGAGATCAGGTAAGAGGCATGTGTATTATTTTGAGTTGGCAT CTCATGTTCATGGATTGGCAAGTATCTCATATTTGATTGGATTGAAGGTCGCAATTCATGAGGCCATGGAACAGCAGACT ATTAGTATCACAAAAGCAGGAATACAAGCTACTCTTAATGCCCGTACTTCCATTCTTGCTGCTGCCAACCCCGCTGGTGG ACGCTATGATAAGTCTAAACCACTAAAGGTAACATGTCCTGGTACCTGGTTATTGATTGCCTTGCCGTTATCAAGTTCAA CATGGCCTAATTGTCTTAGTTTTTCCCTTTTCTTATTTCAGTATAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTT GATCTTGTATATGTCATGATTGATGACCCAGACGATGAAACAGACCACTGCATAGCTGATCACATTGTGAGAGTTCATCA AAAGCGTGAAAGTGCTCTTACTCCAGAATTCACTACTGCACAACTGAAGCGCTATATAGCATATGCAAAAACTCTTAAAC CCAAGGTTTGATACTAGGATTTTGTCTTTTGGACCAAGTACTTTCCTCCTGAATGAGGATAATTCTGCCCTTATGCTTCT TTCTTATTAAGCCTCGTTATTGTAGCTCACATCGGAGGCCAGAAAAGTACTGGTCGATTCTTATGTTGCTCTCCGTCGAA GTGATTCAAATCCTGGGACCAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAGGCC ATTGCACGGTGTCATTTGGAAGATCAGGTGCTTTAAGTTTTCAGCCTTATCAATATGCATTTATGATATGTTTTCCTTGT CTGATCCAAAGAATTTGTGACAGGTACAAGCTCGACATGTTCGTTTAGCAGTTACACTTCTGAAAACATCCGTCATAAAG TAAGACAAATATTTCTTGTTGATATTTTTTCAATTTTTATTTTGAGAGGCTTCCGGTGATAACTGCATTTTACTTTTTCC TGCAGTGTGCAGTCCAGCGAGATCGATCTATCTGAGTTTCAAGAAGCAGATAGGGATGAAGGGGCAGGTAATGGTGATGG AAATGATTCAAATGGCAATGCTAGAGATGCTGATGATCAAGCGGGAAACACTACTGCTCAGCAAGCTGCTGGAACTGATG GTGAGGTGTCTCTAACCAATTTTACCTTGAAATCATCTATCTTGATAAAGAAACTTAATTATGCAACGGTTCAATTATCT TGCAGAAAACCCAGCAGATGGAGTTCAATCCCAGGCGAAGAAACTTATTATAAGTGATGAATATTTTCAGAGAGTTACCA GGGCCCTTATCATGCGTCTTAGACAGCACGAAGAGACTGTTACACAAGATGGTAATCACTTGAAACTTTTCTGAAGCTTT GAATACCCTTTGTCTAGTGTCCATCAAGATTTATTTACTACTATATGTCAGGGATGCTTCAAAGTGTCCGACGTGATCAC CATATTGAAAAGTGAATTTTCTGTGGGCTCACTAATTGCAGGAACCGGTTTGGCTGGGATGAGGCAACGAGATTTGATTC AATGGTATGCAAACCAGCAAAATGAGAAAAACAACTACAGTTCCATGGAGGAGGCAGCAGCAGAAGTTTCCAAAATTAAA GCTATTATAGAGGTATATATTTTACCTCCTTCGAAAGAGTTTAGCATATTATTGTCAGTCATGTTAACTAATATCAAAAA CTTGTTTTGCAGAGTTTAATTCGAAGGGAGGGTCATTTGATAGTAGTAGATGATGGTAGGCAAGCAGGGGCGGAAGCTGG TGGTGCAGTCTCTAGAAACGATCGAATTTTAGCCGTGGCTCCCAATTATGTTATTGATTGATAGCCAAATAGTGATCAAA GAAATTGCAAGTCACCTCATTTCACAATGATAAGGTTTCAGTTACCTGATGTTTCACTTTGTCTTGTCTTGAGCTGCAAT TTGGTGTGTTCCTTATTTGGTGACAATAGAAATGCATTTGTCATAGTTTGACGATCATATTAGACTGTATTTAGAATTTA CATGACCCTTATTTTGGAGTTGTATGGTCTATACTTTTCAAGGATCAATTGAATATATTTTTAGCCAGGAACAATATTTT AATAATGAATAGATTAGCCTGTTTAACTGTTTTGACAGTTCAATTCTATTTGAAATGAAATCAAGGTAAAATTTCTGATT GCATACAAAGGGTAACATCTAAAAATGAAGGATTTGTTTGACAAGGTTTTCTCTCTATTTACATCACTCCAAAATAATAA ACACCATTTAAA 

CDS sequence (LotjaGi6g1v0247200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCTTATGGCGGTTACATGGTGGACGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGAATTTCTCAAAAGTTT CAGGACGAATCGGAACGAGCTCTGCTACGAATCGGAGATTGAAGTGATGAAAGCCAATGAATCCAACACTATGTTCATCG ATTTCGACCATGTCAGTAAATTCAGTAATCACCTTGGTGAAGCTATCTTCGATGAATATTTGAGGTTTGAGCCTTTTTTG AAGAATGCTTGTTTGAGATTCGTCATGGAGCTGAAGCCGACGTTCATTTCTGATGATAACCCTAACAAGGACATCAATAT TGCTTTCTACAACCTTCCACATGTCAAGCGGTTAAGGGAATTGGCTACATCAGAAATCGGGAAGCTTGTATCGGTGACCG GAGTGGTAACAAGGACAAGCGAGGTTCGACCGGAGCTTCTCCAAGGGACTTTCAAGTGCCTGGAATGTGGTGGTGTTATC AAGAATGTTGAGCAGCAATTCAAATACTCTGAGCCAACTATATGTGTTAATGCGACTTGTAACAACAGAACTAAGTGGGC GCTGCTGCGCCAGGAGAGCAAATTTGCTGACTGGCAAAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCT CTTTGCCGAGGTCACTGGATGTTATTCTTCGTCATGAGATTGTGGAACAAGCTAGGGCTGGTGACACGGTGATTTTCACT GGTACTGTAGTTGTTATACCTGATATAATGGCATTGGCATCCCCTGGAGAAAGATCAGAGTGCCGGAGGGAAGCTTCTCA ACGCAAGGGGTCTGCTGTTGGAAATGATGGTGTGAGGGGCCTCAGGGCTTTGGGAGTCAGAGACCTCTCCTATCGTCTAG CTTTTATTGCGAACTCTGTTCAGATTTGTGATGGAAGAAGTGAAACAGACATCAGAAATAGAAAGAAGGATACAGATGAA GATGATCAGCAGTTTTCTGAACAGGAACGGGCTGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCAACAAACTTGT TGGGAGCATTTCTCCAGCTGTTTATGGTCATGCAGATATTAAGCGAGCAATCCTTTTTATGCTTATGGGCGGTGTCCACA AAGTAACTCATGAAGGAATCAACCTCAGAGGCGATATAAACGTTTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCTCAA TTTCTCAAGTATACTTCAGGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGTTTGACTGC AACTGTTGCAAAGGAACCCGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGCATTTGCT GCATCGATGAATTTGACAAGATGGATATCAGAGATCAGGTCGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATC ACAAAAGCAGGAATACAAGCTACTCTTAATGCCCGTACTTCCATTCTTGCTGCTGCCAACCCCGCTGGTGGACGCTATGA TAAGTCTAAACCACTAAAGTATAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATATGTCATGATTG ATGACCCAGACGATGAAACAGACCACTGCATAGCTGATCACATTGTGAGAGTTCATCAAAAGCGTGAAAGTGCTCTTACT CCAGAATTCACTACTGCACAACTGAAGCGCTATATAGCATATGCAAAAACTCTTAAACCCAAGCTCACATCGGAGGCCAG AAAAGTACTGGTCGATTCTTATGTTGCTCTCCGTCGAAGTGATTCAAATCCTGGGACCAGGGTTGCATATCGTATGACAG TTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAGGCCATTGCACGGTGTCATTTGGAAGATCAGGTACAAGCTCGACAT GTTCGTTTAGCAGTTACACTTCTGAAAACATCCGTCATAAATGTGCAGTCCAGCGAGATCGATCTATCTGAGTTTCAAGA AGCAGATAGGGATGAAGGGGCAGGTAATGGTGATGGAAATGATTCAAATGGCAATGCTAGAGATGCTGATGATCAAGCGG GAAACACTACTGCTCAGCAAGCTGCTGGAACTGATGAAAACCCAGCAGATGGAGTTCAATCCCAGGCGAAGAAACTTATT ATAAGTGATGAATATTTTCAGAGAGTTACCAGGGCCCTTATCATGCGTCTTAGACAGCACGAAGAGACTGTTACACAAGA TGGAACCGGTTTGGCTGGGATGAGGCAACGAGATTTGATTCAATGGTATGCAAACCAGCAAAATGAGAAAAACAACTACA GTTCCATGGAGGAGGCAGCAGCAGAAGTTTCCAAAATTAAAGCTATTATAGAGAGTTTAATTCGAAGGGAGGGTCATTTG ATAGTAGTAGATGATGGTAGGCAAGCAGGGGCGGAAGCTGGTGGTGCAGTCTCTAGAAACGATCGAATTTTAGCCGTGGC TCCCAATTATGTTATTGATTGA 

Protein sequence (LotjaGi6g1v0247200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEAYGGYMVDEKAVRVENAFLEFLKSFRTNRNELCYESEIEVMKANESNTMFIDFDHVSKFSNHLGEAIFDEYLRFEPFL KNACLRFVMELKPTFISDDNPNKDINIAFYNLPHVKRLRELATSEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVI KNVEQQFKYSEPTICVNATCNNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFT GTVVVIPDIMALASPGERSECRREASQRKGSAVGNDGVRGLRALGVRDLSYRLAFIANSVQICDGRSETDIRNRKKDTDE DDQQFSEQERAEVQRMRNTPDFFNKLVGSISPAVYGHADIKRAILFMLMGGVHKVTHEGINLRGDINVCIVGDPSCAKSQ FLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISI TKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDETDHCIADHIVRVHQKRESALT PEFTTAQLKRYIAYAKTLKPKLTSEARKVLVDSYVALRRSDSNPGTRVAYRMTVRQLEALIRLSEAIARCHLEDQVQARH VRLAVTLLKTSVINVQSSEIDLSEFQEADRDEGAGNGDGNDSNGNARDADDQAGNTTAQQAAGTDENPADGVQSQAKKLI ISDEYFQRVTRALIMRLRQHEETVTQDGTGLAGMRQRDLIQWYANQQNEKNNYSSMEEAAAEVSKIKAIIESLIRREGHL IVVDDGRQAGAEAGGAVSRNDRILAVAPNYVID 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 7 114 108 5.3E-24
PANTHER 9 803 795 0.0
PANTHER 9 803 795 0.0
Pfam 18 111 94 2.3E-15
SUPERFAMILY 20 248 229 2.06E-60
PRINTS 73 85 13 3.9E-24
SMART 114 653 540 3.9E-262
PRINTS 115 127 13 3.9E-24
Gene3D 118 246 129 1.1E-37
Pfam 118 246 129 1.5E-37
Gene3D 145 196 52 1.1E-37
PRINTS 165 182 18 3.9E-24
PRINTS 218 229 12 3.9E-24
PRINTS 277 298 22 3.9E-24
MobiDBLite 311 333 23 -
Gene3D 326 657 332 1.3E-132
Pfam 331 552 222 3.7E-100
ProSiteProfiles 342 548 207 89.245
CDD 345 651 307 0.0
SUPERFAMILY 353 653 301 4.66E-41
PRINTS 383 398 16 1.2E-32
PRINTS 443 457 15 1.2E-32
ProSitePatterns 451 459 9 -
PRINTS 471 484 14 1.2E-32
PRINTS 495 507 13 1.2E-32
PRINTS 522 530 9 1.2E-32
Pfam 567 651 85 4.2E-25
MobiDBLite 663 713 51 -
MobiDBLite 678 711 34 -
Gene3D 714 833 120 1.3E-16
Pfam 717 832 116 1.7E-19
Coils 776 796 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Biological process DNA replication initiation The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate.
Cellular component MCM complex A hexameric protein complex required for the initiation and regulation of DNA replication.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0247200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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