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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276700 |
| Transcript ID | LotjaGi6g1v0276700.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT2G16390.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35; TrEMBL-Plants: tr|I1LVC4|I1LVC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0276700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59365701..59372027) extracted from Lotus japonicus Gifu genome v1.2.
TTCCAAAGTCTCCCATGAACACAACGTGTTGCTTTCACTCTCACTCTCACACTCATCAAAATTCTGCATTTTTCTCTTCT TCTTCTTCTTCTTCCATTTCAGGTAACTAACTCTCTTCCTTCCTTTCATCTCAATTTCAACAACAAAATTCGATCTTTTT CTTTAATTTTTTCTTCGTTTTTTCTTCAGTTTTCGCATAGTAATCATCAATGGAGGCAGCAATTGATGTATTACCACCAA AACGCCCCGCTCCAAGTGGTATTCTTCATTCCCTTCTCAAAAGTTTCAATCTTTTTCATTTTTTATTCAATTTTTGGTTA ATTATTTTCCTTAATGCTGATAATCAGGTACATGCCACTATGCCCAGTAGTGTTTTTTGTGTTTTGTTTTCAGCTGCATT TTCCTCTCTAGTCAATTGTTTTCTATGAATTTTTGTTAAAGTTGTGTCCTTTTGAATTATTGAATTCTGTTTTCTGGTCA GTCAAACAATGCTTTGATGATATAATGTAGTAATTTTGTGGCATTTTTATCTGTAATTTTTGCTACTGAGTGTGCTTGAA GGGTGGACTGAGAGTGCCATGGTTTGGTTGTTTAATGATTGGGGGTAGGGGCGTGGGCTGAGAAGTGATTAATGCCCTTA GAGTGTTTGAATTAGAGGGGTAGGGTTTGAGAATCAAATGATGTGTTGGGTGCTGAATCCGAACGTTTTGTTTTTAATAA GTTTATTATGTTTGGTGAGCTGCTGAATGAAGTTCAAACTGTGTTAGTCTATGTAGGATCACATTTAAGTCCAACTGAAT TGTACAAGTCTTAAGAATATTTCATTTTGTTGGTCTACTTGTATTTCGTTTCCTCAGGATGGATGTATTTAGTGGGTTAT ATGGATTATGGAATTGTTTAATATTCAGTATAGAACACTTGCAAGGGAGGGATATCTCTAGTTTCTGAATATAGTTTCTG TCATCTCTCCAATTGATAAATTTATCTATTTACATGATGTCTTTCAAATTGTTTAATTTCCAGCAAAAAATACATTTATG GATGTTAGTATCATATAGATGTTGACAATCTTCATTTTCTGAAACCAGGAATTTCTCCTCAGGGACATAAAAGACTGAAA CTATCCAGTGATAGTCTGCCATACTCAGCGCATGATAAAGCTGTACCAGAGACACCTACGAATGTTGAAGACTTCAGCAA TCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTA TAGCCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGTG AACCACGATGAAGAAAGTAATAAGTTGGAAAATGAAAAGGGTACCGTCATGTCACATGATGAAGTAATAGATTTGGAAGA GGAGCGCACTAAAAAGGATGCTTCTGCAGCACAGCTTGTTGTGATCATTGATTCGGATGAGGAAGATGATAGAGATAAAA ATTCTTCTTCTCTTCCATTCAATGAAGTAATGTTGCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGTAAGTTCC CCTGGTTTTGTGATTCTTGAAATATGTGAGCTCTGTGAGCTTTTATTTGGATTAGTGGCATGCTTTCTCCTAGGATGATT TGAAGGAACTTTAGTATTTCATTTTAACACATGTGGCAGAGGACTATATATATATCATTGGCTCTTTCTTGATTTATTAT TTGTCCCTTAATTGTTCTTGTAAAAATATATTGCCCTTTTATTTTCATAAGTATAAAGCAGCCTCTTCTGGCTTTATAGG GTTAATTATGTAATTTATATATCCATCGTCCATATATGACTCATTCTATCTGTTTTTACTCTTTGAATTATTATGTTTGC CATTATATATAACTTACCAACATACATCTTTGGCTTTATTCTGTAAAAATAGAGGTATTATTATTGCAGGGCCTCAATGT TACTTTTAGCTGTTGCAGAAGTTTTCTCCATTGAACCATGTACATGTTTTAAGCTCTTTACCCAACACTTCTAATAATTA CAGAGATCTGATCACCATTCTACAGAACTCTGAAAGTTATCTGATTTTCTTTAAGCATATTAAAGTTTCTTCTTTGTGTA AAAGGCTCATATGACTGAAATGCAGCATTAGAAAAAATTACAGTGTTGAAGAGTCAAGTGAAATTTTGAAGCATTCTAAA TCCCTTGCTATCTCAACACTGCATAGTTCTCTTAAAAATAAGTGCTTAATTTCTAGTGCCATGGCGTAATTCTATGTTAG ATCTTTATAAGTTTCACCGAAGTCTGACATTTTGCCTCAAGTGTCCCAATTTTGTAATTGTTGGCTGTCTTGCTAAACTT AAATGTTTCTATACCATATAAAGTTTCCTGTACCTTTGGTGATAAGTTTGGTAGTCATGCAAATGATGATACAAAAAATA AAAATCATGGACATATTTGGATTTATATTTTTCTAAATTGTTTGCTATTTCTGTCTTCCTTTTTACTTCTTTACTCGTAA TATGCACACCCTTAATGTTGAAACATGAATAGTGTATTAGTTTATATGGAGTTTTCAATTTCTTTGTCAGAGCGTATTGT GTTAATATTCTTCATATAGATTATTAGATGTGTGTTTTGGTAGATTCCTTTGTAACATTCTGTATATTTGGATTGAATTT GTTGCTATATTTCATGAGAAGATGCTGCTACGTCTTTCATGTTTCCTTTTTATTTTTTAATGCAAGTTGGTTCACTGACA TGCTTTATTATTTACTGTGCAACAATTCTTTATAGGGGTATCGAGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTC AAATTTGAGCCAACTCGAGCTGCTAAAGATAAAACTCAGAGAGACAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGA GGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGTATGTTTAC TTTAACTTGTTTTCACATTTCAATAAGAATAACTGTCTTTGTCAATTCGCTATATCTTCTACTCATCGGTTCTTCCTTTC ATGTCATTTCATTGGTACTTGTACTAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTG TGATCATTCTTTTGTTTTAAAAGATGATCTGGGTTATGTTTGTCGTGTTTGTGGGGTCATTGACCGAGGAATTGAAACCA TATTTGAGTTCCAGTACAAGGTTAGACTCTTGTCTCAATGTTAATGATTTTTATGTTATAAATCTTGGTCATAAAATAGT TAGTGTGAAATTGAGTTTTTTAAGTATGCGGCTTGAAATTAGATTTGTAGATTGAATGTTTGGCTCAGGACATAACAATG CTTAAATTAAAACAGTTAGAAATGTGTTCCAAAAACTCTTCTGATAGTTTATGGTTTCCTCTACCTCTTTTGTGTGAAAA TAGGTGATTTGTTTGATTCAACTTCACAAATCACTCAAGAACTTCTTTACTAAACCATAATAATATAATAGCAGGCAGTA CATTTTTATTATTTGGGGTCAATTTCTTTGTAAAACGTTGCCTAGTTCATAATTCTGTATGTTCTGGATTAAAACATGAG ATTACTTATAGCTGGGGACAGCGAGTGATGAAAAATGATTTTTTATTCTTATTTTCTTGTTGAAGGTTAAAAGGAGCACA AGAACCTACATGGCTGATTCATGGAATACCAAAGCAAAAGTTGATGTATATGGAATTAATGTTGCTGAAGATGACATCAT GTTTACTGAAATTTCAGCACATCCTAGACATATGAAACAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCGTCA GAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGC TTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTGGAA AAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATTTTTACACTGTGAAGGCAGACAGTAGATCACAGC AGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTCTGT GATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGG ACATAATCCGCGGAATGAGAATACCGATATGGTGCAGTCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAG GTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACA TCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCGGGCAAGAAATCTTTCTATGATTTGGTGGAGGACAC TTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACT ATTACAAGGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACTGTGTTGCTTAAGCTGACCCCAAGACAGAAG CATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAG ATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGACCAAATGGTGGATGATTTAATAGAGAAGTTGGATG TGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACATTCTAAACTTGTGTGATTCATCCAACGAGAAGCTTCTGGTGTTC AGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTT CGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAATAAATTCAACAATTCACCGGATGCTAAAATTT TCTTTGGCTCAATCAAGGCTTGTGGAGAGGGTATATCATTGGTTGGGGCATCCCGAGTACTTATTTTGGATGTTCATCTG AACCCATCAGTTACTCGTCAAGCTATTGGTCGTGCATTCCGACCAGGACAGACAAAGAAGGTCTTTGTGTATCGATTGAT AGCTGCTGATTCTCCGGAAGAGGACGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAGTGGA ATGAGTACTGTGGTGATAGAGCCTTCCAAGTAGAGACTGTTAGTGTCAATGAATGTGGTGATGAGTTCCTTGAGACTCCA ATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTTTGAGACCACTCTTCTACCTTTTTGCACATCTTATAACAATCA TGCTGTTCTTCACTAATACTTGTTTTATTTGTATATCAGGTAGACTGTTGGCATTTGGCATTCAGATTCAGTGGACTTGG GTAGCAAATGTTTACTGCATTTATGGTACAGACTTGGGTAACAATGTAGACTGTAGAGAGTGGCCTAATTGAGTTAGTTG TCGTTGCTCTTTGTACACATGTGATCCATCTTCCTCACTCTTGTGTGAGTGGAGAGATGTACAGAGTATTAAATTTTCTT GACTTGCTATGATTGCAGTAAAACTTGGTAGTCTTTTATTTCTGTTGCATCAGCTTATCTGGTTGAGATGCTAGTACTAA TATTGCTTTGCTTCAGGAGATATAAGTAGTCAAAATAATTAACTCAGTTTAAATTGAGATTACTGTACTGTGTTGATGCT CATACAATATGTGATTTCATCTTGTTGGCCTAATGAAAAAATGAAACCTGCTAGCAGGATGCATTTGCTGGCTGCATACA ATGTGATAAGTCTTTTAGGTGTCTTATTTGGGTCCCAAAGCAGCCCATAGTCCTCTACCTAACTAAAGGGTGCATTTGCT GCATATGATATGACTGATATTTCTACATAAATTTTTCAATAAAAATAGAAACGCCTAAATAATTAAATAAATGAACCAGT ATATTCAAATAAGAGATAAAAAAAAAGTTTTCATAAATTTATTTTTATAGATTTTATCAGAAATTGTAAAGAACTTTGAA GTGCTTGTGTTTTATTTTAACTTCGTCTTCAGTTTTGTTAAGAATAACCCAAGTTAACTAGCAATGGAACAGTGTAATTT GTTTGGG
CDS sequence (LotjaGi6g1v0276700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAGCAATTGATGTATTACCACCAAAACGCCCCGCTCCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAA ACTATCCAGTGATAGTCTGCCATACTCAGCGCATGATAAAGCTGTACCAGAGACACCTACGAATGTTGAAGACTTCAGCA ATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTT ATAGCCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGT GAACCACGATGAAGAAAGTAATAAGTTGGAAAATGAAAAGGGTACCGTCATGTCACATGATGAAGTAATAGATTTGGAAG AGGAGCGCACTAAAAAGGATGCTTCTGCAGCACAGCTTGTTGTGATCATTGATTCGGATGAGGAAGATGATAGAGATAAA AATTCTTCTTCTCTTCCATTCAATGAAGTAATGTTGCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGGGTATCG AGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTCAAATTTGAGCCAACTCGAGCTGCTAAAGATAAAACTCAGAGAG ACAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAA ATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTG TGATCATTCTTTTGTTTTAAAAGATGATCTGGGTTATGTTTGTCGTGTTTGTGGGGTCATTGACCGAGGAATTGAAACCA TATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACCTACATGGCTGATTCATGGAATACCAAAGCAAAAGTTGAT GTATATGGAATTAATGTTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGACATATGAAACAAATGAA GTCTCATCAAATTGAAGGGTTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATG CTCCAGGATCTGGGAAGACATTCATGATAATCAGCTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTG GTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGA TTTTTACACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTT TCTTGGGGTACAAGCAGTTCTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTG CTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACCGATATGGTGCAGTCCCTTGC AAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGA ATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCG GGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCA AGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAGGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATT TTACTGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTA TCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGA CCAAATGGTGGATGATTTAATAGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACATTCTAAACT TGTGTGATTCATCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATG AAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCAT GAATAAATTCAACAATTCACCGGATGCTAAAATTTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGTATATCATTGGTTG GGGCATCCCGAGTACTTATTTTGGATGTTCATCTGAACCCATCAGTTACTCGTCAAGCTATTGGTCGTGCATTCCGACCA GGACAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGATTCTCCGGAAGAGGACGATCACATTACTTGTTTCAA GAAGGAATTGATTTCAAAGATGTGGTTTGAGTGGAATGAGTACTGTGGTGATAGAGCCTTCCAAGTAGAGACTGTTAGTG TCAATGAATGTGGTGATGAGTTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTAG
Protein sequence (LotjaGi6g1v0276700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAIDVLPPKRPAPSGISPQGHKRLKLSSDSLPYSAHDKAVPETPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIEAL IARKMQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENEKGTVMSHDEVIDLEEERTKKDASAAQLVVIIDSDEEDDRDK NSSSLPFNEVMLPNSLQSPALRMMGYRAPIAYHGESEDLKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWRE MSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNTKAKVD VYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPL VVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDIL LKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHIS GKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKV SSMGSALYLHPRLIPVADKCGENSVSDQMVDDLIEKLDVKDGVKSKFFMNILNLCDSSNEKLLVFSQYLLPLKYLERLVM KWKGWSFGKEIFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRP GQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDEFLETPMLGEDVKALYKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 39 | 876 | 838 | 0.0 | – | |
| PANTHER | 39 | 876 | 838 | 0.0 | – | |
| Gene3D | 315 | 569 | 255 | 3.2E-47 | ||
| SUPERFAMILY | 327 | 541 | 215 | 4.26E-32 | ||
| SMART | 342 | 556 | 215 | 1.7E-13 | ||
| CDD | 346 | 554 | 209 | 2.61556E-76 | – | |
| Pfam | 349 | 545 | 197 | 4.5E-20 | ||
| ProSiteProfiles | 360 | 539 | 180 | 13.646 | ||
| SUPERFAMILY | 485 | 839 | 355 | 1.54E-37 | ||
| Gene3D | 609 | 857 | 249 | 2.1E-39 | – | |
| ProSiteProfiles | 669 | 853 | 185 | 10.648 | ||
| CDD | 675 | 812 | 138 | 5.87933E-39 | – | |
| Pfam | 691 | 800 | 110 | 8.6E-9 | ||
| SMART | 716 | 801 | 86 | 6.9E-11 | ||
| Coils | 875 | 877 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0276700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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