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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0289900 |
| Transcript ID | LotjaGi6g1v0289900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A0S3S3Z4|A0A0S3S3Z4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0289900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60711844..60717585) extracted from Lotus japonicus Gifu genome v1.2.
ATTATATTTCATTGTATATCCAAACATGCACATTTAGTTATGGGGCAAGAAGAGGACAAATAACAAGGTGAGAATATTAT TAAATGGATGGAGAGAGAGCCATCCAAGACCAAGAATGGAGTGAGAGAGATAGAAAGAACGTTGATTCCGTGCCCCATAA ACCCATCCATCTATCTCTCTTCTCCATCCATGGTCAGTCAGTATAGTAGTAGTTTTAGGTAACTTGTTTTGTATCCCTCG ATTTGATCGAACCCTACTCACTCATCTTTCTCTCTACTGCTTGAGTTGCCAGTAATGGCAGGGTATCAGTGGCAGTGCAG GAAAAGAGAGTTTTCATTGGGAAGGTAACACCCCTTTTTTTGCCCCAGTACTGTCTTACTTCAACCCTCTCACCCTCTCC TTCTTCGGTAATAACTTTGGAAACTTATCCTTCTGATCCCCCGCGTGCACTGTATGCGTAACCTTGTAATAACCACCAGA GCAAAGCCTGAGACAACGTTGATTAGTACTCAAATTAACTCTCACTCATTTTCCAAAGGAAATATCATCCCCACAGCAGG CTTTATCAGAAAAGCCAAGAGGGAAAACCTCTGTAGCTACCTCTTCATTAACTATAGCCTCCACTATCACTATTTAGGAT TTTCTGTAAAAAGCCTCATACTTTTCACCATAAATCCCGGGAGAGACAACAGACCTGAAAGAAAGACATACATAGAGAGA GAAACAAAATTAGAGGTACTAGAAGGTTTTCTTTCCCTCCTTGTTATAAGGGTTGTGAACTGTAGTGAGTGAGTGAGTGA GAAGTGAGCAATGGAAGGTAATAATTCTAATTGTAATGGCCCTTCTTCTTCATATTTGATGGCTTTTGGAGAAAACAGTG GTGGGCTATGTCCTATGTCTATGATGATGATGCCTTTAGTCACTTCTCATCATCAAATAAATCCTCCAAATCCTCATCAT CATCATAATAATAACAATAATAATGCAAACACAAACAACTGTCTCTTCCTTCCCATTCCTTCTTCCACCAACTGCAATAG CAGTGCAAGCCCTTCCATCATGCTTGATAATAACACCACCCCTACCAACAACCCTGGGTTAGGATATTACTTCATGGAGA GTGACCACCACCACCACAACAACAACAATGGAAGCTCCTCTTCCTCTTCTCCAGCTGTCAAGGCCAAGATCATGGCCCAT CCTCTCTACCAACGCCTCCTAGCAGCCTATGTCAATTGTCAAAAGGTAATTAGAAAAAAAGAAGATATAAAGCTTAATCT TAACTATACTTGTGTGTGATAAGAAACCCTTCACAGTGATTGATAATGATGCTTTTTCTTTCTTTGGCAAGTTTGGATCT GGGGTGTGTGTTGCATTTTGTACTATGAAACTGTGGAGGTCTTTCCTTTTTCTAACTCCATTGACAATTACAAATTATAT TATATGTTCCACTGTAAGGAAAAAATGAGAGTGACGTACAAGTCAAACTTCAAATTAAACCCTTTAGTCTAGAGATGATG AAGACAGTTTTGTTTGTTTCATGGAAATTTTATGTAACTTTATTTATTTTATTTCATGATGCATGGTTTGTGTGTGTCTG GCAGGTGGGAGCACCACCAGAAGTGGTGGCGAGGTTGGAAGAAGCGTGCGGTTCTGCGGTGGGGATGGCCGGTGATGCTG TTGGGTCAGGTTGTATTGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTATGAG CAAGAGCTCTCCAAACCATTAAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTTTCAGTTCAAAAATCTCACAGTTTC TTCTGACGTTGGTGATGTTCTCTTTCTCTATCATGGATTTTTTTTTATACTTTAATATCTTTTGGTTTTGGAGAAAGTAG GTTTTGTTAGGATTAAAAAATGCTTTGTTATTAAATTAATTAATGTAGATGAAATCACTACTTTTTCTTTCTCCATGATA TTTTATTCTGCTGGCTAGTCTTTTCTTTGCATAAATACTAGCAACGGTGCATGCCCTTGCTCTCAAAACTTGATTTTGTC TGTATATGGTGGTGCATAGTACATGTTTGTTTTCTGTTCTCCGTGTTCGTGTGTTGATTGAACTGTACTACTACTATCTT GTTAACTCGTGATTTTGTGTGTGCATGCCTCATAGTGACATAATCAGCTGGCAAATGTAAGACTTTGATCATGTTAGGTT ATCTATGTATTTCCCCATTTGATGCTTACACAGCAACTCTCTGCAGTTTTAGCTGGTTCTGCTCCCTATCATGTAATTAT TTAAAGATTCTACTACTTGAGATGAATCCAAAGATAGAAGAGCAGTTGAGGGAAATAAATGTTTTGTTAAATATAAATGA CCTAGGGACTAGGGTTTGTACTGCACCTTGACCAAGATTGGTAATAGCGAGGTAAACAGTTGGATGGGTTACATAAGTTT CTCTCTTATATGGGGAAGTGTTATGGAGATGAAATAGGGGCAGAAAAGAACTTGAGTCTTTTGAAAATAAGGGCAGAAAA GAACTTCACTCATTTCTACATTTTTTACCTGCCCATAGAAATGGTTATATATCAATAATGATAGCTTAATTAGTTGGTGA AGGATGAGGAAGTCCCTCAAGTCCTTTGTTACAAATGGACAAGCATTGGTTTGAAACACTTTAAGCTGATATTTGAGTTT CTTCTTTTCTCTTATACTTGTTTTATAGTGTGAGGAGATGTAGTTGAAATATTTGTTCTAGATGTGTATACTAGGTCTTG TCCGGTTGAAAGTGAAGTCTATGTATTGAATAAATTGCTCATTGTTTTTATTCTCACCTGGTCATTTGTTTTGACAACAG CGGTAGTTTTTCTTCGGTTTTGGAGTTTTCCATATTATATTCTTGTGTTGTTAATTGTGTTCTTGTTTTCTTTCCCTATG GCTTGGTGTTTTCCCCCAACAGTGAGCATATTCATTCACTCTTGTTGCCCTTAACAATAATGATGTTAAATTTTTGGGCC TAAAAGGGCTTTTGAGAAGGGTCAGGTTTCTTAATAGAGTTTAAGCTATTTGGGTGGTCATGTTGCCCTTAAAAATAAAG ATGTTGAGTTTTAAGTTATGTTATCCAATTTGTACCCTCAAGGTTCCATGTGCATATCACTTTTAAATATGGATATTGTT TGACTTGTATAAGTCCAAAACTAGTGTAACTCTTTGCTTTGTCATTGTTCTGCCTGTGTTTGCGTCTCTGCAGGTGCAGA TGCGTGCATTTTGAAATGCTTGTTAGAATTGTGTTGGGGTGTTATGATGCTGATTTATCTGCTTAACTTTAACTGGAAAT GGATTTACATTATCACATCCACATGATGCTAATTGTTGTATGGAATTTGCAATTGATTGAGACAACCATCATATATTTGG GTCAAACTTTACTGCTGAAGTTTTAATGAGTATGATGAAAATAAGTAGTAGCTTATTTTCTTGTTGTGGGATAGAAGCAT GACATAGCTTTTGGTAAATTGCTGTTCTCAAGCTTTCAACTATGTATGGGCCGAAAGAAGTAGTAGTTGCTTTCCTCTAG TTGATGTAACGAGATTCTTCTTGTGGGGAGAAATCAAATTAATGGTGCTGATCTCTATGTTCTTGTTATCTAAGAGTTCT TTTGTCGTTCATCAGAAGTGGGTTCTGAATTGTGGAAGTCTAAATTGTGTCTGTTCTGTTGTTAAATATTGCCCTTCAAA TTTCTTCAAACATTTAATTCCAATAAAACAGATGGTTCAGAATAGACAATATCTCTTTGTATTTCCATTTTTTAAGATAT TTATCTTTGTTGTACATATTCATTAAATGAAAATAAACCATTGTTGATTTCTTTGGGGTTTTAATGATACATGTTTGACT CCCTTAAACAAGGTCTCATCGAGTCTTGTGTATGGTAAAAACACCTGCTTGGGGTTTGAGAGAGCTTGCCCCATCCAGAT TTGTATATTCATATTCTCAGCTCAAAAAAACAAAAACAAAATTGCTGTTCAAATTATTCTATCAATAAATGCCTATGCAT TTCTTGGGGACTGTCTCACTTACCCCTAGTGTTAATAGCCTCATCTTGGATGGATCAGTTAGATTTTGTATTGAAAATTA CACTGGACCTTCTATAGTTAAAACTAAACTAGCCCCCATAGGATGTATTATTATTCAACACTTAGGGTCAATTAGACACC CACTTTCTTTGAGATAGACCCTGAATTTTGGGCAGTTTGAATATTTCTGAAGTACACATGTTACTGCTTTTTTTTGTCTC CTTTATTACTTTAGGGTTCCCCAGTTTTTAAATTTTGTGTAGAAAGAAGCTCCCCTAGGCATGACTAGGGTCTGTGTTTT GATAAAGTATCCCTTCATATTTTATGGTATGCATCCATTCCTCTGCAGGATACTTTTTCTTTTCTTAACTTTATGGATTC TGTGTAGGAAAAAGGGGGAGGGGTGTCCATTATCTCAGGGTTCATACGCATATAAGCCTTGGGAATAAGTTTTCTAAAGG TGTTTGGCACCCGACTCTTTATCCTAGTTTAAGTGACAACTTCCAATGTTGAGAATCAATTATTTCCTAATGATTGCAAG TTGTACTTGTTTGTCTTTTATTTAAAACCAAACATGTTTTGCTAGTTTCAACCAAGTGAATTAGTAATGATATGAAATGG CATGGTGCTGGGTGCCTATGTTCATTGATTTATTGGATGAATGTGAATACTTGAAGTGCAATTTGTCATTGTACTACTCA CTCTGAACTTGACCTTTACTTGTTTGCTTTTTTTACTAACATTATTGAACTGATTCATGTGAGGATCAGGTTGTAATGAG GGCACTGAAAGGAACACTGGATCATCTGAAGAGGATGCTGATCTATACAACATGATAGATCCTCAGGCAGAGGACAGGGA ATTAAAGGGTCAGCTTTTGCGTAAGTATAGCGGATACTTGGGGAGTTTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAG GAAAGCTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGTATGT TGCATGATCCATAACTCTTTAATTTCTTTCCTAATGTCCTGTAAATTGTCAAGTTAATTCATATAGATTGACTTAAACAC ACATACATAGTTTTAATGTGGTCCAATTAATAACAGGAATCACAGAAGCTGGCACTGGCAGAGTCAACAGGTTTGGATCA GAAACAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAGTTTATGGTTGTGG ACCCAAGCCATCCTCACTATTACATGGATAATGTTATGAGTGCTCCCTTTCCCATGGATCTCTCCAACCACATGCTCTAG AAATTATGTGGATTTAATGCAAAACTGTAAGGGATTAGTAAAAACCTTGTATTATCATATAGTAATATGCGTATATGTAG AGATCAATTAAGCAATATTGTAAAGTCCTCCAAGATCAATGTGCAAATAGTGCGTTAGTTAGCTTCTAGATGGATCAAGT GTGCATCGTCTACTTAAGGAAAACCATGAAAATAAAATTTATATATGGAGTTATGAATAAGTTAAGTTTATTGATACGCA TGTCATTACTTTTCTTTTATATACTATGGACATGTATTTATGCTGTAATACATGGATGCAAT
CDS sequence (LotjaGi6g1v0289900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTAATAATTCTAATTGTAATGGCCCTTCTTCTTCATATTTGATGGCTTTTGGAGAAAACAGTGGTGGGCTATG TCCTATGTCTATGATGATGATGCCTTTAGTCACTTCTCATCATCAAATAAATCCTCCAAATCCTCATCATCATCATAATA ATAACAATAATAATGCAAACACAAACAACTGTCTCTTCCTTCCCATTCCTTCTTCCACCAACTGCAATAGCAGTGCAAGC CCTTCCATCATGCTTGATAATAACACCACCCCTACCAACAACCCTGGGTTAGGATATTACTTCATGGAGAGTGACCACCA CCACCACAACAACAACAATGGAAGCTCCTCTTCCTCTTCTCCAGCTGTCAAGGCCAAGATCATGGCCCATCCTCTCTACC AACGCCTCCTAGCAGCCTATGTCAATTGTCAAAAGGTGGGAGCACCACCAGAAGTGGTGGCGAGGTTGGAAGAAGCGTGC GGTTCTGCGGTGGGGATGGCCGGTGATGCTGTTGGGTCAGGTTGTATTGGTGAAGATCCAGCTCTGGATCAGTTCATGGA GGCTTACTGTGAGATGCTGACCAAGTATGAGCAAGAGCTCTCCAAACCATTAAAGGAAGCCATGCTCTTCCTTCAAAGGA TCGAGTTTCAGTTCAAAAATCTCACAGTTTCTTCTGACGTTGGTTGTAATGAGGGCACTGAAAGGAACACTGGATCATCT GAAGAGGATGCTGATCTATACAACATGATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGTAAGTA TAGCGGATACTTGGGGAGTTTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCAAAAGAAGCAAGGCAAC AATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCACTGGCAGAGTCAACA GGTTTGGATCAGAAACAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAGTT TATGGTTGTGGACCCAAGCCATCCTCACTATTACATGGATAATGTTATGAGTGCTCCCTTTCCCATGGATCTCTCCAACC ACATGCTCTAG
Protein sequence (LotjaGi6g1v0289900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGNNSNCNGPSSSYLMAFGENSGGLCPMSMMMMPLVTSHHQINPPNPHHHHNNNNNNANTNNCLFLPIPSSTNCNSSAS PSIMLDNNTTPTNNPGLGYYFMESDHHHHNNNNGSSSSSSPAVKAKIMAHPLYQRLLAAYVNCQKVGAPPEVVARLEEAC GSAVGMAGDAVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIEFQFKNLTVSSDVGCNEGTERNTGSS EEDADLYNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAEST GLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHYYMDNVMSAPFPMDLSNHML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 376 | 354 | 6.6E-176 | – | |
| PANTHER | 23 | 376 | 354 | 6.6E-176 | – | |
| SMART | 121 | 165 | 45 | 7.4E-19 | ||
| Pfam | 122 | 160 | 39 | 2.9E-22 | ||
| SMART | 172 | 223 | 52 | 2.1E-25 | ||
| Pfam | 176 | 222 | 47 | 1.9E-20 | ||
| Pfam | 258 | 279 | 22 | 3.8E-11 | ||
| SMART | 258 | 279 | 22 | 2.8E-8 | ||
| ProSiteProfiles | 258 | 278 | 21 | 11.174 | ||
| Gene3D | 276 | 348 | 73 | 3.4E-21 | – | |
| ProSiteProfiles | 278 | 341 | 64 | 13.086 | ||
| SMART | 280 | 345 | 66 | 1.2E-12 | ||
| SUPERFAMILY | 280 | 356 | 77 | 1.84E-19 | ||
| CDD | 290 | 342 | 53 | 4.8564E-13 | ||
| Pfam | 298 | 337 | 40 | 6.9E-17 | ||
| ProSitePatterns | 316 | 339 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0289900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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