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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0314000 |
| Transcript ID | LotjaGi6g1v0314000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G30290.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic; TrEMBL-Plants: tr|K7M151|K7M151_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0314000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63214129..63218912) extracted from Lotus japonicus Gifu genome v1.2.
TCACCCTGTATGTATCCAAACAAAGCATAAGAGAACCAAATTTGATATGCAGCAATGGAACCCTGACCCAGTAAACAGAG AAAAGCTTGAAGTTGATGATGATTGCTTTGCTTGGTTACCCACCTCAAGCTTACAGGTTAATATCGAAAACTTTGTTACT CTGAATCGATTCTAAACCATTGTTGATGACATTGAAATGTGGGTATTGTTGCAGAAACCAAGACAATGTAGATTTTGTTT CTGTATAGTGAAAAACATTGTCCATGGCACTTCTGAGGTTGAATCAGCATCCGCTGAGAAAGGTTTTAGCTACCCATTTG TCCTCTTTTGCTCTGACTCTTCATTCTGCAACAACTTCGATTCCCGTTTCATATTCAACTGCTAATCTTCTTGGTGATGA GGGTGACTGCAACATTAAGAATTTCAATCATGGTTTTGGGAAACTGGGTTCTAGGTTTCCTGGGGAGTTAGGTTTTGCTG CAAGTGTCAATGATGATGTACAAGAAGATGATGAGATTGAGAGTATTGAGCTGAAGAGTTCCGACCGTGGAAATCGCGAA GAACGAGAAAATATTGGAAGGGTTGAAATTGATGAGAGTGAATTTAGACACCCTTTGGTGAGAGAGGTTTGTAGGTTAAT CACACTCAAGTCTGCTTGGAACCCGAAATTTGAAGGAAACCTAAGGCATTTACTAAGAAGCCTAAAACCCCCGCTTGTTT GTGCTGTTTTACGCTCTCAAGCTGATGAGCGCGTTGCTTTGAGTTTTTTCTACTGGGCTGATCGGCAGTGGCGCTACAGG CACCATACTGTTGTGTACTATACAATGCTAGATGTCCTTAGCAAGACTAAATTGTGTCAAGGCGCGAGGCGGATCCTTCG GCTCATGACCCGCCGAGGAATTGAATGTTCGCCCGAGGCTTTTGGCTATGTGATGGAATCTTATAGTCGGGCAGGCATGT TGCGGAATGCCCTGCGAGTTTTGACCTTGATGCAGAAAGCCGGTGTTGAACCTAATTTGTCTATATGTAACACTACTATC TATGTTTTGGTGAAGGGGAATAAATTAGACAAGGCACTTAGATTCTTGGAAAGAATGCAGCTGGCTGAAATCAAACCCAA TGTTGTCACGTATAACTGCTTGATCAAGGGTTACTGTGATTTAGATCGGATTGAAGATGCATTGGAGCTTATTGCAGAAA TGGCATCCAAAGGATGCCCTCCAGATAAGGTTAGTTATTATACTGTGATGGCTTTCCTCTGTAAGGAGAAAAAAATTGAG GAAGTGAAATGCTTAATGGAGAAAATGGTTCAGAATAGTAAATTAATACCAGATCAGGTTACATATAAAACACTTATCCA CATGCTTTCGAAGCATGGACATGCAGATGATGCTCTTGCTTTTCTGAGGGAAGCAGAAGACAAGGGTTTCCACTTTGATA AGGTTGAGTATAGTGCAATAGTTCACTCGTTCTGTAAAATGGGGAGGATGGACGAGGCAAAGTGTTTAGTAACCGATATG TACACAAGAGGCTGTAATCCTGATGTAGTGACATACACTGCTATTATTGATGGATTTTGTCGAATGGGAAAGATTGCTGA AGCAAAGAAGATGCTGCAGCAGATGTACAAACATGGATGCAAGCCAAATACTGTATCATATACAGCTTTGTTAAATGGCC TCTGTCTCAATGGAAAATCATCAGAGGCAAGGGAGATGATAAATGTGAGTGAGGAGCATTGGTGGACACCAAATGCCATC ACTTATAGTGCTGTGATGCATGGGTTCCGTCGGGAGGGAAAATTGTCGGAGGCTTGTGAATTGGTCAGGGAAATGATTGA AAAAGGTTTTTTCCCAACTCCTGTTGAAATTAACCTGCTAATACAGTCTCTCTGTCAAAATCAGAAAGTAGTAGAAGCTA AAAAATATTTAGAAGAATTTCTACACAAGGGCTGTGCCATTAATGTTGTAAACTTCACTACTGTAATTCATGGCTTTTGT AAGATTGGAGATTTGGAAGCTGCTCTATCCGTGCTAGATGACATGTATTTAAGTAACAAACATCCTGATGCTGTCACATA TACCGCATTGTTCGATGCATTGGGGAAGAAAGGTAGACTGGACGAGGCTGCTGAGTTAATTGCAAAGATGCTAAACAAAG GTCTGCTTCCTACTCCTGTTACATACAGGACAGTCATCCACCATTATTGTCGATGGGGCAGAGTCGATGATATGCTGAAA TTATTGGAAAAAATGCTCGCTAGGCAACCATTCAGAACTGTGTACAATCAGGTTATTGAGAAGCTTTGTTTTTTTGGGAA CCTTGACGAGGCTGAGAAACTACTAGGGAAGGTTTTGAGAACAGCATCAAAACTTGATGCTAATACATGTCATGTTCTGA TGGAAAGCTATTTGACTAAAGGGACTGCACTCTCAGCATATAAAGTGGCTTGTCAAATGTTTAGACGTAATTTAGTTCCC GATTTAAAGTTGTGTGAGAGAGTGACCAAGAGACTGATGTTAGATGGTAAGATGGTGGAGGCTGATAACCTTATGTTAAG GTTTGTTGAGCGTGGAATACAACAAAATGAGACACATTTACAATGCTAGATGCTACTGTTAGCTTAAAGTCCCTGCCTCC CTGGTATGGTTCTATTGTCAATATGGTTCATCCTTTTCTGTTGTTGGTATTCCATCATGTTGCATTCAATGTGGTAACAC TTTTGTTTTGGGAATGTAAAATTTATTCAAATAATCATATATGTGGATTAGATTATTCTATCATTTTTTGGTTCTGTTAC AGATTACACTCTTTTACTTTCTCCTGTCTATTGTGCTTATAAATCTTTGTTTGAACAAATGAAGAAGAAAAAAATCTAGG GAGTGCATTGTTTGAACTTTGAAGCATTGAGACTATTGTGTCTATTGGCTATTAGGCTACTAATTACATGTTGTAATGTT TTTTCATACAAACTGTACGGACTTGACATGGTAAATTGTAAATCACATTTTCTAATGGCATAGCATAGGGACCTAGATCA TAGGAAGGACCAAACACAGCAAGATCAGCAAAAGGAGAAGCTCACCTAGTTATTAAATTTCATTTCATTTGTGATTGATT GTGTTCAAACTTCAATGAGTCCTATGCAGTTCAATGATAGTGTGACGGTCATGTTCATGTCCCATACCAGTTACTGCCTT GGTAGCTTTCATATTGGATGTCATACTCTCTCGAATAATTTAACAATCCTTTTTTTCTTTGGAGAGTTTGTGTTCTGTAT ATTCTGTTCTCATTTGATTTCTAACTTAAGTATTACATTTAAAATTTTGTTAGCTGAACTCATCTGCAGCTCTAAGTGTT AATTGAACATAACAGAATGCAGCTTAAGCACTAACACAGAACTTGTGCACTAGTCTGATCAGAAGAAAACTGATCGAATG GAATAAAATAAAACCAGGAGGGTCTCTGGCTAGATAGCTTTCGCATTATTCAACTCTGCAAAACTGGGAAGTCCATGGCG AAATGATGGAAAGAGATAAAGCTAACCTGCATCTGCCATCTCTGTATTTTAAACAAGAAGGCTCTCCTATGAGTTATTCT TTCTTAAGTATACATGGTACATGTTAAACTTTCCTATCAGTTGATGTTCTTGGTAACCATAAGGTGATGATGTTTCCTAC AATGTTCTTACTACCACAAATTCAGAACCAGCTGACATTGTTATAAATAGCGCATTGGTGGAATTCAAGCTGTTCATATA TTGAAAGGTTAGATGCATTCCTTTCAATGATTTGTCTGCAACAAGCATAAGGAATGAGCAGTGTGTAATGCATAGAGGGA GCGATATATGGTCTTCATACATATTATTATTTAGCATTGTCTTTCATTCTTTCTCTTGCCCCATTTCCCAAACAATGTCT GCCCCTTATCAGGGGAATGGAGGGGGTCTAAACACCTTATAATTACATTTTATCTGTGGTACATAACTAGGTGAGTGCCT CTCAGAAAAAGAAAAAAAATTACTAGGTGAGTTACTTGGCATATACAAAATTCTTAGTTAATGAAAATATGAAATTCTAA GTCAAACTATCTAGAATTCTCTTACATCCTCACTGCTCAACAGCTGAAATCTTACTGAGTTGTGGTTTGAATGCTAGTGT TGACATATGTTCATCAGAATCATAGCTTCAGCTTTCATAGCATGTCTCGTGCCGCTTTGCAGCAAGATTCATGCTACATG TCGCAATAGAAACCAAACCTTCCATCCTCCCGCTGCTGTGAGTCACCCCCGTGAATGACAGAGCTGCTGCACCTGCACCA CAGTGTTGGATTACGTGCTTCTGAAGGGACCAAGCTAAGAGATGAGTTTTTTTCATAGCTCTTGATAGTTTTTTTCTTAA AAGTTAGTTGTGTTTTATTTCTTCAATAAAAATAAGTAGCTTTTTATTTTAAGAGCTCTTACAAATAGTCTCCGAATCCG AATGATAGTTAAAGTGGTAAGAGTTAGGTGACATGTGAGTTGAGAGTGGGTGGTCTAGGGATCAATATTTTGGAGGGTGC AATTTATCTTTTCGCGGTTAAAAAAAAAAACTCACAAATAACTTTTTTGTTGTTGTTGTCAATTACAAATATGACAGTAA TGATTAAGACTTGTGTTAGTCACATGGACTCTTTTTAATAGTGAGGTCCTGAGGTCCCTACTCTAACCATGATCTACTAG AATTTCTTTGATGGCTTATATTGTGTTTTTATTTGTATTTTTTTTTGATTTGTGAATACGAGAG
CDS sequence (LotjaGi6g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTTCTGAGGTTGAATCAGCATCCGCTGAGAAAGGTTTTAGCTACCCATTTGTCCTCTTTTGCTCTGACTCTTCA TTCTGCAACAACTTCGATTCCCGTTTCATATTCAACTGCTAATCTTCTTGGTGATGAGGGTGACTGCAACATTAAGAATT TCAATCATGGTTTTGGGAAACTGGGTTCTAGGTTTCCTGGGGAGTTAGGTTTTGCTGCAAGTGTCAATGATGATGTACAA GAAGATGATGAGATTGAGAGTATTGAGCTGAAGAGTTCCGACCGTGGAAATCGCGAAGAACGAGAAAATATTGGAAGGGT TGAAATTGATGAGAGTGAATTTAGACACCCTTTGGTGAGAGAGGTTTGTAGGTTAATCACACTCAAGTCTGCTTGGAACC CGAAATTTGAAGGAAACCTAAGGCATTTACTAAGAAGCCTAAAACCCCCGCTTGTTTGTGCTGTTTTACGCTCTCAAGCT GATGAGCGCGTTGCTTTGAGTTTTTTCTACTGGGCTGATCGGCAGTGGCGCTACAGGCACCATACTGTTGTGTACTATAC AATGCTAGATGTCCTTAGCAAGACTAAATTGTGTCAAGGCGCGAGGCGGATCCTTCGGCTCATGACCCGCCGAGGAATTG AATGTTCGCCCGAGGCTTTTGGCTATGTGATGGAATCTTATAGTCGGGCAGGCATGTTGCGGAATGCCCTGCGAGTTTTG ACCTTGATGCAGAAAGCCGGTGTTGAACCTAATTTGTCTATATGTAACACTACTATCTATGTTTTGGTGAAGGGGAATAA ATTAGACAAGGCACTTAGATTCTTGGAAAGAATGCAGCTGGCTGAAATCAAACCCAATGTTGTCACGTATAACTGCTTGA TCAAGGGTTACTGTGATTTAGATCGGATTGAAGATGCATTGGAGCTTATTGCAGAAATGGCATCCAAAGGATGCCCTCCA GATAAGGTTAGTTATTATACTGTGATGGCTTTCCTCTGTAAGGAGAAAAAAATTGAGGAAGTGAAATGCTTAATGGAGAA AATGGTTCAGAATAGTAAATTAATACCAGATCAGGTTACATATAAAACACTTATCCACATGCTTTCGAAGCATGGACATG CAGATGATGCTCTTGCTTTTCTGAGGGAAGCAGAAGACAAGGGTTTCCACTTTGATAAGGTTGAGTATAGTGCAATAGTT CACTCGTTCTGTAAAATGGGGAGGATGGACGAGGCAAAGTGTTTAGTAACCGATATGTACACAAGAGGCTGTAATCCTGA TGTAGTGACATACACTGCTATTATTGATGGATTTTGTCGAATGGGAAAGATTGCTGAAGCAAAGAAGATGCTGCAGCAGA TGTACAAACATGGATGCAAGCCAAATACTGTATCATATACAGCTTTGTTAAATGGCCTCTGTCTCAATGGAAAATCATCA GAGGCAAGGGAGATGATAAATGTGAGTGAGGAGCATTGGTGGACACCAAATGCCATCACTTATAGTGCTGTGATGCATGG GTTCCGTCGGGAGGGAAAATTGTCGGAGGCTTGTGAATTGGTCAGGGAAATGATTGAAAAAGGTTTTTTCCCAACTCCTG TTGAAATTAACCTGCTAATACAGTCTCTCTGTCAAAATCAGAAAGTAGTAGAAGCTAAAAAATATTTAGAAGAATTTCTA CACAAGGGCTGTGCCATTAATGTTGTAAACTTCACTACTGTAATTCATGGCTTTTGTAAGATTGGAGATTTGGAAGCTGC TCTATCCGTGCTAGATGACATGTATTTAAGTAACAAACATCCTGATGCTGTCACATATACCGCATTGTTCGATGCATTGG GGAAGAAAGGTAGACTGGACGAGGCTGCTGAGTTAATTGCAAAGATGCTAAACAAAGGTCTGCTTCCTACTCCTGTTACA TACAGGACAGTCATCCACCATTATTGTCGATGGGGCAGAGTCGATGATATGCTGAAATTATTGGAAAAAATGCTCGCTAG GCAACCATTCAGAACTGTGTACAATCAGGTTATTGAGAAGCTTTGTTTTTTTGGGAACCTTGACGAGGCTGAGAAACTAC TAGGGAAGGTTTTGAGAACAGCATCAAAACTTGATGCTAATACATGTCATGTTCTGATGGAAAGCTATTTGACTAAAGGG ACTGCACTCTCAGCATATAAAGTGGCTTGTCAAATGTTTAGACGTAATTTAGTTCCCGATTTAAAGTTGTGTGAGAGAGT GACCAAGAGACTGATGTTAGATGGTAAGATGGTGGAGGCTGATAACCTTATGTTAAGGTTTGTTGAGCGTGGAATACAAC AAAATGAGACACATTTACAATGCTAG
Protein sequence (LotjaGi6g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLRLNQHPLRKVLATHLSSFALTLHSATTSIPVSYSTANLLGDEGDCNIKNFNHGFGKLGSRFPGELGFAASVNDDVQ EDDEIESIELKSSDRGNREERENIGRVEIDESEFRHPLVREVCRLITLKSAWNPKFEGNLRHLLRSLKPPLVCAVLRSQA DERVALSFFYWADRQWRYRHHTVVYYTMLDVLSKTKLCQGARRILRLMTRRGIECSPEAFGYVMESYSRAGMLRNALRVL TLMQKAGVEPNLSICNTTIYVLVKGNKLDKALRFLERMQLAEIKPNVVTYNCLIKGYCDLDRIEDALELIAEMASKGCPP DKVSYYTVMAFLCKEKKIEEVKCLMEKMVQNSKLIPDQVTYKTLIHMLSKHGHADDALAFLREAEDKGFHFDKVEYSAIV HSFCKMGRMDEAKCLVTDMYTRGCNPDVVTYTAIIDGFCRMGKIAEAKKMLQQMYKHGCKPNTVSYTALLNGLCLNGKSS EAREMINVSEEHWWTPNAITYSAVMHGFRREGKLSEACELVREMIEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEEFL HKGCAINVVNFTTVIHGFCKIGDLEAALSVLDDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIAKMLNKGLLPTPVT YRTVIHHYCRWGRVDDMLKLLEKMLARQPFRTVYNQVIEKLCFFGNLDEAEKLLGKVLRTASKLDANTCHVLMESYLTKG TALSAYKVACQMFRRNLVPDLKLCERVTKRLMLDGKMVEADNLMLRFVERGIQQNETHLQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 781 | 753 | - | – | |
| Gene3D | 124 | 280 | 157 | 4.2E-19 | ||
| PANTHER | 175 | 354 | 180 | 3.4E-139 | – | |
| PANTHER | 175 | 354 | 180 | 3.4E-139 | – | |
| ProSiteProfiles | 181 | 215 | 35 | 7.903 | ||
| TIGRFAM | 183 | 216 | 34 | 0.0023 | ||
| Pfam | 203 | 261 | 59 | 8.7E-5 | ||
| ProSiteProfiles | 216 | 250 | 35 | 10.271 | ||
| TIGRFAM | 220 | 251 | 32 | 3.7E-5 | ||
| ProSiteProfiles | 251 | 285 | 35 | 9.142 | ||
| TIGRFAM | 254 | 287 | 34 | 3.8E-4 | ||
| SUPERFAMILY | 261 | 699 | 439 | 1.33E-5 | ||
| Gene3D | 281 | 351 | 71 | 9.6E-20 | ||
| Pfam | 285 | 334 | 50 | 1.2E-14 | ||
| ProSiteProfiles | 286 | 320 | 35 | 13.899 | ||
| TIGRFAM | 288 | 321 | 34 | 3.9E-10 | ||
| ProSiteProfiles | 321 | 351 | 31 | 8.002 | ||
| TIGRFAM | 323 | 357 | 35 | 2.0E-4 | ||
| PANTHER | 324 | 526 | 203 | 3.4E-139 | – | |
| PANTHER | 324 | 526 | 203 | 3.4E-139 | – | |
| Gene3D | 352 | 420 | 69 | 7.6E-15 | ||
| Pfam | 355 | 383 | 29 | 1.1E-5 | ||
| ProSiteProfiles | 357 | 391 | 35 | 10.413 | ||
| TIGRFAM | 359 | 392 | 34 | 2.3E-4 | ||
| Pfam | 387 | 419 | 33 | 1.2E-5 | ||
| ProSiteProfiles | 392 | 426 | 35 | 11.608 | ||
| TIGRFAM | 396 | 428 | 33 | 2.2E-7 | ||
| Gene3D | 421 | 488 | 68 | 6.3E-23 | ||
| PANTHER | 425 | 567 | 143 | 3.4E-139 | – | |
| PANTHER | 425 | 567 | 143 | 3.4E-139 | – | |
| Pfam | 426 | 474 | 49 | 1.9E-18 | ||
| ProSiteProfiles | 427 | 461 | 35 | 14.063 | ||
| TIGRFAM | 429 | 463 | 35 | 8.4E-11 | ||
| SUPERFAMILY | 436 | 528 | 93 | 9.94E-7 | – | |
| ProSiteProfiles | 462 | 496 | 35 | 9.197 | ||
| TIGRFAM | 464 | 497 | 34 | 8.7E-4 | ||
| Gene3D | 489 | 561 | 73 | 4.5E-14 | ||
| Pfam | 496 | 545 | 50 | 4.4E-9 | ||
| ProSiteProfiles | 497 | 531 | 35 | 12.803 | ||
| TIGRFAM | 499 | 532 | 34 | 3.4E-8 | ||
| PANTHER | 531 | 698 | 168 | 3.4E-139 | – | |
| PANTHER | 531 | 698 | 168 | 3.4E-139 | – | |
| ProSiteProfiles | 532 | 566 | 35 | 8.232 | ||
| TIGRFAM | 537 | 567 | 31 | 8.3E-4 | ||
| Gene3D | 562 | 630 | 69 | 1.7E-17 | ||
| Pfam | 562 | 594 | 33 | 1.4E-9 | ||
| ProSiteProfiles | 567 | 601 | 35 | 10.49 | ||
| PANTHER | 568 | 764 | 197 | 3.4E-139 | – | |
| PANTHER | 568 | 764 | 197 | 3.4E-139 | – | |
| TIGRFAM | 571 | 602 | 32 | 3.1E-6 | ||
| Pfam | 601 | 650 | 50 | 1.9E-12 | ||
| ProSiteProfiles | 602 | 636 | 35 | 12.781 | ||
| TIGRFAM | 604 | 637 | 34 | 6.1E-7 | ||
| Gene3D | 631 | 701 | 71 | 1.2E-11 | ||
| ProSiteProfiles | 637 | 667 | 31 | 10.084 | ||
| TIGRFAM | 639 | 667 | 29 | 4.5E-7 | ||
| ProSiteProfiles | 670 | 704 | 35 | 7.048 | ||
| Pfam | 673 | 696 | 24 | 0.15 | ||
| ProSiteProfiles | 705 | 739 | 35 | 7.98 | ||
| ProSiteProfiles | 740 | 774 | 35 | 5.196 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0314000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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