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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0332300 |
| Transcript ID | LotjaGi6g1v0332300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3RZR2|I3RZR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0332300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64728113..64731329) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGAAGAGTTAGTCCCACAATAATATGGATGTTCCTGGCTCGAACATGATTACTTCCGAAGGAGAACACCTGACTTAC ACATAAAAATTAGCTTATGAACAAGCTTTTACTTGGTTAACACTGAATTAATTAAGTTGTTAACCTAATGACACTTGTTT GTAAGACCCTGTCATTCTTTGGAGTCCTTGTTGTACATATTTATTATTACGTCCTACAGGCAGCACACTTGTCTCGTACC CTGTCTGCCCGTTGCTGTTTCTATTCACGAAATTTCTCACAAAGCAAAGCTGTCAAGGCTGTCCCCTCTGTTAACTGGTA TGTCTTTCCTTCTTTTATCCTCTTCGATTCTCTATTCTATGTTTTACTATCATCATCATCATCATCCAGTTATTGTTCTT CATTTTTTGCTTGTAAATTGTCAGGGCATGTTTTAATTTGCTTTGCGTAGATCTTGTAATTTTGCATGCTTTTTAAGTTT GATCTCTGCTTTTTGTGTTGTAGTTAAGTCAACAATTGATCCTTAATTCATGTGAAAAAAAATTCAATCATTCTTGAGAT TCAGAGACTTATTAATTTTAGATATCAACCAATTAGCTTTCGTGTTGTAAATGAACCCTGGTTTATAGGTTTTGAATTGG TTTGTACCTCTCCATATGATATCATATTGAATTTTTCACTGTTTAACCTTGATCTCCTTCCTACAAGGATAACTTCTTTG CTATGTTGTTTTTTTAATTGTTTACTAGTTAAGTTAATCTTTGTTATATACTGGTTGGTGATAGCACCATCACATGCCTA TCAGCCTATGGCATCTTATAGGATAGGAGTGGATTCTGAAAAGTCTTGTCTGGGATGTTTTGGCGGATCCCCCAGAATAT GAACATAAGTATTTAGTGTTTTAGGTTTATGTTCTTGTGCAAGTTTCTACTCTTTTTCTATTTTGTTATTTTGTGCATCA GAAAAGCAGCTGCATAATTGAATAGATTTGATGTTCTTTCGCTGGAGTTTAGGCATCTTTATTATTATACCCTCAGTATA AATTATTCACGATTTCTGTACTGCTTGAGCTCAGAGTGATGCATTTTAGTTAATTGGCTTCTTTAGTTCTTTTAGTTTCA AAAGACTTGGAAATTGGAAACATTGGAGCAGATTGCATACATAAATGCTGTTCTTTATAGCAGAACTCTATGACCAACTT GAAGTGATTGGTTTGATTGTTGGTCCTTGCTTGAGTGAGTGTATGTCCAACTCATTCAATAACACCTTGACCTATGACAT GTTTAGATCAGCTTCTATTCCCTCACAATCAATTCCGACACCCAGAAGCTACTAACAAATGTCCTATTGTTAGTCTCAAT TTTGCTGGACTGCATCTATTATGTTAATTCCTATAAACTTGTTTTTTAATTCTGTGTATTGAGGTGGCTTTTCTCTTGTA TGTACATGACAAAAAGCTGTGAGAAGGGGGGTTCCTTGACTCATGGCATTTCAGCACTACTTTTCCCAGGAATTGAAAAC CACCCCAAATTCTGTGACAGAAACAGAAAGTTCCAATGGTTGTTTCGATTGCAACATCTGCTTAGACATCGCACACGAAC CGGTAGTCACCCTCTGTGGTCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTACATGTCCAAAGTGATTCTCTCGCA CCTGATGAGCATCCACAATGCCCTGTTTGTAAGGTTGACATATCCCACAGCACAATGGTCCCGCTGTACGGCCGAGGGCA CGCCCCACGTGGTGGGAAAGCATCATGTTGTGATCTATTTACACCACCAAGACCACCTGCTTCAGGTGCTCAAGCTCTTT TGGGAACATCATCATCATCTCAAAATTCTCAGCAGCAGCAGCAGCTTCAATATCGTAATCCTTATCAAGGTCAATATTTC AGCTCTCCTTTATACCAAGAAGAAGATGATGATGCCACTTCACAAATGTTCAATCTTGGTGCTTCAACCATGACAACTCC AGGATCCCACCCCCACCCTGTAGTAGGGATGTTTGGGGAGATGGTTTTCGCTCGAGTGTTTGGCAACTCGGAAAATTTGT ACGCCAACCCGAATTCTCATCAGTTGATGAGAAGTAATGGCTCTAGAATGAGAAGGCAAGAGATGCAGGCAGACAAATTT TTGAACAGAATTTCAATTTTTCTCTTGTGCTGCTTTTTTCTGTGCCTTATCTTTTTCTAAATATGCAGTTGAGAGTTGAG ATTGTTCTCTTTCCCTGTTGTATACTTAATAGAGTAGCATGGTTGTATGCTTTAAGAATTTATAGATCGAGTGAATTGTT ATAGGCTATATTTTATAAGGTAACATGGTTGTATGGTTTAAGAATTTGATAGATGGAATGGATTATCATAAGCCAAATTT TTTATATTTTTCTACAGAAAGTTGCTCTCTATGTTATAACAAATTGCATGTGAAGGAATGTTTTAGTTTAAAGAAAAGGT ACCTTATTCAGTTGTGGAACTAAAAATCCTTAATAGGATGCAGGAATGATTACTTGACCCGAGTAGAATATTATAATGGG CTCATCCATTAAGTTAAAGAAATGTACTAGCTAGGATACACTGTTAATACTGTGATAGGATTTGTTAAAGAAATGTACTA GGATCCTCTACTGGGTCCTGCCTCTGCATTAGTTAATGAATTATTTTATCAATCATCTTTTTATTAGCTTTCTTAATCCT TGGATACAAACATCAAGGGCTGTGATGTTGCAGGATAGGGCTGCATATAGAAGCTGCTGGAGAGGATTCATTTTCCGCAA ATGAAATGGAAGAGTTTTGAGTCATTCGCATTATACTTTTTTTTCTTTTATCCAATTTTCACTTATTTTATCTTCATATC TCTTCTTTTTCTATCACATCCTCCATTATATCTGTTATTTATCTTTTTTCTAGGAGCAACTGATGTGTTCAAGATGCAGT TGGTGTATTCCAGATGTAATGGTGGGCTCGAGCTATGTTGTTATGCAAAGTGTATGACATATATTACGAAGTTACGCTTT GTTTTATTTTCATCCACATGATTTAGTTGGTAGTTATTTTTGTAAACACGGTAAATATGGCTTTGTAATTCGAAATGAGG GCTGAAATCACACTACTGAAAAAACTCTAAAAAAATCTCACGTTCACCGTTAGGACAATGAGGGTTGAACATACGTTTGA TCAGTACTTATCGAAGC
CDS sequence (LotjaGi6g1v0332300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTCAGCACTACTTTTCCCAGGAATTGAAAACCACCCCAAATTCTGTGACAGAAACAGAAAGTTCCAATGGTTG TTTCGATTGCAACATCTGCTTAGACATCGCACACGAACCGGTAGTCACCCTCTGTGGTCACCTTTACTGCTGGCCCTGCA TCTACAAGTGGCTACATGTCCAAAGTGATTCTCTCGCACCTGATGAGCATCCACAATGCCCTGTTTGTAAGGTTGACATA TCCCACAGCACAATGGTCCCGCTGTACGGCCGAGGGCACGCCCCACGTGGTGGGAAAGCATCATGTTGTGATCTATTTAC ACCACCAAGACCACCTGCTTCAGGTGCTCAAGCTCTTTTGGGAACATCATCATCATCTCAAAATTCTCAGCAGCAGCAGC AGCTTCAATATCGTAATCCTTATCAAGGTCAATATTTCAGCTCTCCTTTATACCAAGAAGAAGATGATGATGCCACTTCA CAAATGTTCAATCTTGGTGCTTCAACCATGACAACTCCAGGATCCCACCCCCACCCTGTAGTAGGGATGTTTGGGGAGAT GGTTTTCGCTCGAGTGTTTGGCAACTCGGAAAATTTGTACGCCAACCCGAATTCTCATCAGTTGATGAGAAGTAATGGCT CTAGAATGAGAAGGCAAGAGATGCAGGCAGACAAATTTTTGAACAGAATTTCAATTTTTCTCTTGTGCTGCTTTTTTCTG TGCCTTATCTTTTTCTAA
Protein sequence (LotjaGi6g1v0332300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFQHYFSQELKTTPNSVTETESSNGCFDCNICLDIAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKVDI SHSTMVPLYGRGHAPRGGKASCCDLFTPPRPPASGAQALLGTSSSSQNSQQQQQLQYRNPYQGQYFSSPLYQEEDDDATS QMFNLGASTMTTPGSHPHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFLNRISIFLLCCFFL CLIFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 225 | 225 | - | – | |
| PANTHER | 2 | 238 | 237 | 9.8E-105 | – | |
| PANTHER | 2 | 238 | 237 | 9.8E-105 | – | |
| Gene3D | 3 | 89 | 87 | 3.3E-16 | ||
| SUPERFAMILY | 26 | 89 | 64 | 5.89E-16 | – | |
| CDD | 28 | 77 | 50 | 1.29121E-25 | – | |
| ProSiteProfiles | 30 | 77 | 48 | 12.489 | ||
| Pfam | 30 | 76 | 47 | 3.6E-8 | ||
| SMART | 30 | 76 | 47 | 1.3E-8 | ||
| ProSitePatterns | 45 | 54 | 10 | - | ||
| MobiDBLite | 114 | 134 | 21 | - | – | |
| MobiDBLite | 117 | 134 | 18 | - | – | |
| TMHMM | 226 | 244 | 19 | - | – | |
| Phobius | 226 | 244 | 19 | - | – | |
| Phobius | 245 | 245 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0332300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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