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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0351100 |
| Transcript ID | LotjaGi6g1v0351100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66309410..66315399) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCGTTTTTCTGTTCTTCCTCACCACGTTCTATCCCTTTCTAATTTTCTTTCTCTGTTGAAATCCCTAGAAAACGAAC CTAGGGTTTTCGAAAACCCACTCTCAGAGAATCATGGACCCTGAGATTGCGAAGACGCAGGAAGACAGGAAGAAGATGGA GCAGGAACTCGCTTCCCTCACCTCCGTCACCTTCGACACCGATCTCTATGGCGCTAGCGACAGAGACGCATACCACACTT CAATCCCCGCCAACGACGACGACGACAATCTCGACGCCATCGACAACGAGGTCGCTCGCAAACTCGCTTCCTACACCGCC CCCAAAAGCCTCCTCAAGGACATGCCCTCCGCCCCCGAAACCGACGCCGATTTGGGTTTCCGCAAGTCGCAGAGGATTAT TGATCGGGAAGATGATTACCGTCAGAGGAGGCTCAACCGCATCATCTCCCCGGAGCGTCATGATCCCTTCGCCGCCGGTG AGAAGACGCCGGACCCCTCTGTTAGGACCTACGCTGAGATCATGCAGGAGGAGACGCTGAAGAGGAAGAAGGAGGAGACG CTGAAATTGATTGCTAACAAGAAGAAGGAGGAGGAAGAGGCTGCCAAAGCTGCACCTGCACCTCCTGCGGATAAGGCGGA TAAGGATAAGGCGGCGGCGGCGCAGAAGAGGAGGAATAGGTGGGATATGTCTCAGGAAGATGGGGCGGCGAAGAAGGCGA AAACCTCTGATTGGGAGGACGAGACCACGCCTGGGCGGTGGGATGCCACTCCGACGCCGGGGAGAGTGATAGATGCGACT CCAGGGAGGAGGAATAGGTGGGATGAGACTCCTACACCTGGTAGATTGGTGGATTCTGATGCTACACCTGCTGGTGGTGC TACTCCTGGTGCTACCCCTGCTGGAATGGCTTGGGATGCTACCCCGAAGCTTGCTGGGATGGCTACTCCAACTCCTAAGC GGCAAAGATCAAGGTGGGATGAAACACCTGCTACTATGGGCAGTGCTACTCCTTTGCCTGGTGCCACTCCTGCTGCTGCT TACACTCCTGGTGTTACCCCTGTTGGTGGGATTGAACTTGCTACCCCAACTCCGGGGCAATTGCACGGTGGTGCCATCAC TCCGGAGCAGTACAATCTTTTGAGGTGGGAGAGGGATATTGAAGAGAGGAATCGTCCATTGACTGATGAAGAGCTTGATG CTATGTTTCCAATGGAAGGGTATAAGGTGCTGGACCCTCCTGCTTCCTATGTGCCAATCAGGACACCTGCGAGGAAGCTT CTTGCTACTCCAACTCCGTTGGGGACTCCTGGTTTTCATATCCCTGAGGAGAATCCCCTGCAACGGTACGATATTCCGAA GGAATTGCCTGGTGGTTTGCCGTTCATGAAGCCTGAGGACTACCAGTATTTTGGATCACTGTTGAATGAAGATAATGAAG AGGAGTTGTCACCGGATGAGCAGAAAGAGCGGAAGATTATGAAGCTTCTTCTGAAAGTGAAGAATGGGACACCTCCTCAG AGGAAAACTGCGTTGAGACAGCTTACTGATAAGGCTCGTGAGTTTGGTGCTGGCCCATTGTTTAACCGGATTCTGCCGTT GCTCATGCAGCCTACTCTGGAGGATCAAGAGAGACATCTTTTGGTCAAGGTAATTGATAGAGTTCTGTATAAATTGGATG AATTGGTTCGCCCTTATGTGCATAAGATTCTTGTTGTGATTGAACCCTTGTTGATTGATGAAGACTACTATGCCCGTGTG GAGGGGAGGGAAATCATATCTAATCTTAGCAAAGCTGCTGGGCTGGCCACAATGATTGCTGCTATGCGGCCTGACATTGA CAATATTGATGAGTATGTTAGGAACACTACTGCTAGAGCTTTCAGTGTTGTTGCTTCTGCTCTTGGTATTCCTGCATTGT TGCCTTTCCTGAAGGCTGTCTGTCAAAGTAAGAAATCATGGCAAGCTCGGCACACGGGGATTAAAATTGTGCAGCAGATT GCCATTTTGATTGGTTGTGCTGTACTGCCCCATCTGAGATCTCTTGTGGAAATTATAGAACATGGTTTGAATGATGAGAA TCAGAAGGTGAGAACAATTACTGCGCTGTCTCTTGCTGCTCTTGCTGAGGCTGCTGCTCCTTATGGCATTGAAAGTTTTG ACTCTGTGTTGAAGCCACTGTGGAAGGGTATTAGGCAGCACCGTGGGAAGGTGCTGGCTGCGTTTTTGAAGGCAATTGGG TTTATTATTCCATTGATGGAAGCCCTTTATGCTAGTTACTATACTAAGGAGGTCATGCTTATTTTGATTCGTGAATTCCA GTCACCTGATGAAGAAATGAAGAAAATTGTCCTGAAAGTGGTGAAGCAGTGTGTGAGCACCGAGGGTGTGGAAGCTGATT ATATTAGAACTGATATTCTTCCTGAATTTTTCAGGAACTTCTGGGTCAGGAGGATGGCTTTGGATAGAAGGAACTACAAG CAACTCGTGGAGACAACAGTAGAGATAGCCAACAAAGTTGGTGTTGCTGATATTGTTGGAAGAATTGTGGAAGATCTTAA AGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAAACTATTGAGAAGGTGGTCACTAACTTGGGATCATCTGATATAG ATGCACGGTTGGAAGAGCTTTTGATAGATGGTATTCTCTATGCCTTCCAAGAGCAGACCAGTGATGATGCTAATGTGATG CTCAATGGATTTGGTGCAGTAGTGAACTCGCTTGGCCAGAGAGTGAAACCATATCTTCCACAGATTTGTGGTACCATCAA GTGGCGGTTAAACAACAAGAGTGCAAAGGTGAGACAGCAAGCTGCGGACCTCATCTCAAGGATTGCTGTTGTCATGAAGC AGTGCCATGAGGAACAGCTGATGGGTCATCTTGGTGTTGTCTTGTACGAGTATTTAGGAGAAGAGTATCCTGAAGTTTTA GGGTCAATTCTGGGAGCTCTCAAATCAATTGTCAATGTTATTGGTATGACGAAGATGACTCCGCCTATTAAGGATTTGCT TCCCAGGTTAACTCCAATTTTGAAGAATAGGCATGAGAAAGTCCAGGAGAACTGTATTGACCTTGTGGGTAGGATTGCCG ATCGTGGGGCTGAGTTCGTACCTGCAAGAGAATGGATGAGGATCTGTTTTGAACTTCTTGAGATGCTTAAGGCACATAAG AAGGGAATTCGTAGAGCGACGGTCAACACTTTTGGATATATTGCGAAGGCCATTGGACCACAAGATGTCCTGGCAACTCT ATTGAACAATCTAAAGGTGCAGGAGAGGCAGAACCGTGTCTGCACAACTGTGGCAATTGCAATAGTTGCGGAAACATGTT CACCCTTCACAGTTTTGCCAGCATTGATGAATGAGTATCGTGTGCCAGAGCTTAATGTGCAAAACGGTGTTCTCAAATCC CTGTCTTTCCTCTTTGAGTACATTGGTGAAATGGGTAAGGACTACATCTATGCGGTGACTCCTCTGCTTGAGGATGCTCT TATGGACAGGGACTTGGTTCATAGGCAGACAGCTGCTTCTGCCGTGAAGCACATGGCACTGGGAGTGGCTGGTTTGGGTT GTGAAGACGCGCTGGTCCATTTGCTGAACTATGTCTGGCCAAACATTTTTGAAACTTCTCCACATGTGATCAATGCTGTG ATGGAAGCAATTGAAGGGATGAGGGTAGCTTTGGGTGCTGCTGTTGTTCTTAATTACTGTCTCCAAGGGCTGTTCCACCC TGCTAGAAAAGTGAGGGAGGTGTACTGGAAGATCTATAACTCACTCTATATTGGAGCTCAGGATGCTCTTGTAGCAGCAT ACCCTGCCTTGGAGGATGAGCACAGCAACGTATACAGTAGACCAGAGTTGATGATGTTCATCTAGATTATCACAGTTTAT GCGGTTGAAAACTATTGTTAGACTTTTTACATTTCTTAGAGGTGTCCATATCAGCTATATTGCATGGTCTTTCAAACTTA TTTTATGGTACTGCGTCTATCTTGTATTTTTGCTGAACAAGTATCTTCTATATGTCTGTTTTCTCTATTTGTCTCGTTGA TTTTGCGATGTGTTAAATATGCTGTAGTCTTTATATTCTAGTTTTGATGGATTGTTCTCGTTTTTTATATGCAGAGCTGT GAAACATGCATCCAGTGTGAAATTTCAAATCCTGTAATGCAGTATCCTTTGGTGGGCAGTGAAATGAGGAAAGAACAACT TGTGTTGTTTGCAATGTGATATTAATATTACTGTTACTGTGTGGTTGCTGATTTTAGCCTCTAGGTTGTTTGATCAATAG GGTTCCCACTTCTCAGTTCTCACATGTATCTATGAAAAAAATGGTGAGAATAGGTTGAAGGTTTGAAATTTGTTAGCTGC CAATGGGCAGAGTTTGGCAGAGTTTTGCTCTTAGAAATACAAACTAGAATTTTGAAAGATAGACTGGAGTACAAACACAC ATAAAATCTCACCACTTTTATTTTGAGTACTTGAGAAGCACATTGTACTAGCAGTAGAGAATCAACTTATATGTACTGAT TGTAATGAAAATAAGATATAGATTACTTCATTTTTAGTAGCCCTTTTCTCTATTGAATCAAGTTCTCATCTTCAAATTTT AAATCTTCTTCCTTTTTAGGTTGCTTAGTGGGGTTTGTGAGAGTAGGTCAAGGTGGGGGATGGTCTCCCGATTCTGGTTT GCAGTTTGAGCTGCAAAGGCTATGACTCTTAGTGATGTCTTTAATTTGTTGGCTGCTTGAATTGTCAATCAACATTGTGG TGGAACGATGTGGTAACTACCTCCAATGTTGTTGTTTTTTATTGATTACTCTTTTAACTCCTCATATGCTCTTTTTATTC TTTGGTTGTTGGTTCAGGAACTAGTATTGATTGAAGGGCCTTGATTGAATTTCTGACTGAAGCATTTGGTCGAAAATACT TGTGCATACTTTTATCCATCATCTAATTCTCTAATGGTTATTCATGACATCTTCCAAAGTGTCTGACTGTTTATTGTTAC ATTGTATTAGTGTGGACAAGGAAGGGCTCATTCCCTCTTTTTATTATTGCCAGCTTTCTTGAATGGTAGGCCACTGCCCT TATTTACGGAGGATTCTTAGTTGATGGCTGTATCGTGTTCCATCCTCCCCCAGCTGCCACCAACCTCACTTTCTGGATGG ATTTGCTAATGGGATTCCACTAATACAATACTATCACCCAACCCTCACCCATCATTATCTGGAGTTTCGTTCACCATTTT CCGTATTATTTTTGTCTTCCCTTTTTCTTTTTCTAACTCTGATTATTGGGTTTCATGCTTTGAGGGAAATTATACTTTCT TCCTTTCTCTTCTTTCGATGTTCCCCTATCAAACTCAGGTAATCCAAGCACGATTGAAGTGATAATTTCTCCATATTTAT CTTCTTTGTTGAAATAAAATGGGTTATTAATAAGTTTTTTGTCCTGTATAATGTGTGAGATTTCAAAAAAGTCGAAGGAA CACTCCTGGGTTTAGAGATAAAGCAAGCAAGTTGGAACGTGGTTAAATCCGAGTCTGGTGAATAATATTAAGGATGGGCA TGCAAATTCGTACTCGAATGTGGTGGGAGAAATGCCATCTAGGGGGTAAGAATGGGTGAAAGAATCGCAATGATGGGTCT GCTTCTCTTTTAGAGATTGCTAATGATGCAGGTGAGCAAATTGTGAATTCGGATTGGAATGAGTACATGGAAGTCCCAAT TAGAGATAAAAATGTGGTGACAAGTGAAAAGGACGAGTTTAATCAACCAAAACTGAAAACAGTTTGTAGATAAGCTCAAC TAATAATATATTATTGAATGTGTGTAAACAAAATTTACATTGATTGTGTACTCGACTTTAATCTCTAAATTATATTAGAT GGTTTATGAGGATAGTGACGTTAAACTCAACTAACAATATCAAGTGTTTACTTCCATTTAATCCTCAAAG
CDS sequence (LotjaGi6g1v0351100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCTGAGATTGCGAAGACGCAGGAAGACAGGAAGAAGATGGAGCAGGAACTCGCTTCCCTCACCTCCGTCACCTT CGACACCGATCTCTATGGCGCTAGCGACAGAGACGCATACCACACTTCAATCCCCGCCAACGACGACGACGACAATCTCG ACGCCATCGACAACGAGGTCGCTCGCAAACTCGCTTCCTACACCGCCCCCAAAAGCCTCCTCAAGGACATGCCCTCCGCC CCCGAAACCGACGCCGATTTGGGTTTCCGCAAGTCGCAGAGGATTATTGATCGGGAAGATGATTACCGTCAGAGGAGGCT CAACCGCATCATCTCCCCGGAGCGTCATGATCCCTTCGCCGCCGGTGAGAAGACGCCGGACCCCTCTGTTAGGACCTACG CTGAGATCATGCAGGAGGAGACGCTGAAGAGGAAGAAGGAGGAGACGCTGAAATTGATTGCTAACAAGAAGAAGGAGGAG GAAGAGGCTGCCAAAGCTGCACCTGCACCTCCTGCGGATAAGGCGGATAAGGATAAGGCGGCGGCGGCGCAGAAGAGGAG GAATAGGTGGGATATGTCTCAGGAAGATGGGGCGGCGAAGAAGGCGAAAACCTCTGATTGGGAGGACGAGACCACGCCTG GGCGGTGGGATGCCACTCCGACGCCGGGGAGAGTGATAGATGCGACTCCAGGGAGGAGGAATAGGTGGGATGAGACTCCT ACACCTGGTAGATTGGTGGATTCTGATGCTACACCTGCTGGTGGTGCTACTCCTGGTGCTACCCCTGCTGGAATGGCTTG GGATGCTACCCCGAAGCTTGCTGGGATGGCTACTCCAACTCCTAAGCGGCAAAGATCAAGGTGGGATGAAACACCTGCTA CTATGGGCAGTGCTACTCCTTTGCCTGGTGCCACTCCTGCTGCTGCTTACACTCCTGGTGTTACCCCTGTTGGTGGGATT GAACTTGCTACCCCAACTCCGGGGCAATTGCACGGTGGTGCCATCACTCCGGAGCAGTACAATCTTTTGAGGTGGGAGAG GGATATTGAAGAGAGGAATCGTCCATTGACTGATGAAGAGCTTGATGCTATGTTTCCAATGGAAGGGTATAAGGTGCTGG ACCCTCCTGCTTCCTATGTGCCAATCAGGACACCTGCGAGGAAGCTTCTTGCTACTCCAACTCCGTTGGGGACTCCTGGT TTTCATATCCCTGAGGAGAATCCCCTGCAACGGTACGATATTCCGAAGGAATTGCCTGGTGGTTTGCCGTTCATGAAGCC TGAGGACTACCAGTATTTTGGATCACTGTTGAATGAAGATAATGAAGAGGAGTTGTCACCGGATGAGCAGAAAGAGCGGA AGATTATGAAGCTTCTTCTGAAAGTGAAGAATGGGACACCTCCTCAGAGGAAAACTGCGTTGAGACAGCTTACTGATAAG GCTCGTGAGTTTGGTGCTGGCCCATTGTTTAACCGGATTCTGCCGTTGCTCATGCAGCCTACTCTGGAGGATCAAGAGAG ACATCTTTTGGTCAAGGTAATTGATAGAGTTCTGTATAAATTGGATGAATTGGTTCGCCCTTATGTGCATAAGATTCTTG TTGTGATTGAACCCTTGTTGATTGATGAAGACTACTATGCCCGTGTGGAGGGGAGGGAAATCATATCTAATCTTAGCAAA GCTGCTGGGCTGGCCACAATGATTGCTGCTATGCGGCCTGACATTGACAATATTGATGAGTATGTTAGGAACACTACTGC TAGAGCTTTCAGTGTTGTTGCTTCTGCTCTTGGTATTCCTGCATTGTTGCCTTTCCTGAAGGCTGTCTGTCAAAGTAAGA AATCATGGCAAGCTCGGCACACGGGGATTAAAATTGTGCAGCAGATTGCCATTTTGATTGGTTGTGCTGTACTGCCCCAT CTGAGATCTCTTGTGGAAATTATAGAACATGGTTTGAATGATGAGAATCAGAAGGTGAGAACAATTACTGCGCTGTCTCT TGCTGCTCTTGCTGAGGCTGCTGCTCCTTATGGCATTGAAAGTTTTGACTCTGTGTTGAAGCCACTGTGGAAGGGTATTA GGCAGCACCGTGGGAAGGTGCTGGCTGCGTTTTTGAAGGCAATTGGGTTTATTATTCCATTGATGGAAGCCCTTTATGCT AGTTACTATACTAAGGAGGTCATGCTTATTTTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTCCT GAAAGTGGTGAAGCAGTGTGTGAGCACCGAGGGTGTGGAAGCTGATTATATTAGAACTGATATTCTTCCTGAATTTTTCA GGAACTTCTGGGTCAGGAGGATGGCTTTGGATAGAAGGAACTACAAGCAACTCGTGGAGACAACAGTAGAGATAGCCAAC AAAGTTGGTGTTGCTGATATTGTTGGAAGAATTGTGGAAGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTAT GGAAACTATTGAGAAGGTGGTCACTAACTTGGGATCATCTGATATAGATGCACGGTTGGAAGAGCTTTTGATAGATGGTA TTCTCTATGCCTTCCAAGAGCAGACCAGTGATGATGCTAATGTGATGCTCAATGGATTTGGTGCAGTAGTGAACTCGCTT GGCCAGAGAGTGAAACCATATCTTCCACAGATTTGTGGTACCATCAAGTGGCGGTTAAACAACAAGAGTGCAAAGGTGAG ACAGCAAGCTGCGGACCTCATCTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAGCTGATGGGTCATCTTG GTGTTGTCTTGTACGAGTATTTAGGAGAAGAGTATCCTGAAGTTTTAGGGTCAATTCTGGGAGCTCTCAAATCAATTGTC AATGTTATTGGTATGACGAAGATGACTCCGCCTATTAAGGATTTGCTTCCCAGGTTAACTCCAATTTTGAAGAATAGGCA TGAGAAAGTCCAGGAGAACTGTATTGACCTTGTGGGTAGGATTGCCGATCGTGGGGCTGAGTTCGTACCTGCAAGAGAAT GGATGAGGATCTGTTTTGAACTTCTTGAGATGCTTAAGGCACATAAGAAGGGAATTCGTAGAGCGACGGTCAACACTTTT GGATATATTGCGAAGGCCATTGGACCACAAGATGTCCTGGCAACTCTATTGAACAATCTAAAGGTGCAGGAGAGGCAGAA CCGTGTCTGCACAACTGTGGCAATTGCAATAGTTGCGGAAACATGTTCACCCTTCACAGTTTTGCCAGCATTGATGAATG AGTATCGTGTGCCAGAGCTTAATGTGCAAAACGGTGTTCTCAAATCCCTGTCTTTCCTCTTTGAGTACATTGGTGAAATG GGTAAGGACTACATCTATGCGGTGACTCCTCTGCTTGAGGATGCTCTTATGGACAGGGACTTGGTTCATAGGCAGACAGC TGCTTCTGCCGTGAAGCACATGGCACTGGGAGTGGCTGGTTTGGGTTGTGAAGACGCGCTGGTCCATTTGCTGAACTATG TCTGGCCAAACATTTTTGAAACTTCTCCACATGTGATCAATGCTGTGATGGAAGCAATTGAAGGGATGAGGGTAGCTTTG GGTGCTGCTGTTGTTCTTAATTACTGTCTCCAAGGGCTGTTCCACCCTGCTAGAAAAGTGAGGGAGGTGTACTGGAAGAT CTATAACTCACTCTATATTGGAGCTCAGGATGCTCTTGTAGCAGCATACCCTGCCTTGGAGGATGAGCACAGCAACGTAT ACAGTAGACCAGAGTTGATGATGTTCATCTAG
Protein sequence (LotjaGi6g1v0351100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPEIAKTQEDRKKMEQELASLTSVTFDTDLYGASDRDAYHTSIPANDDDDNLDAIDNEVARKLASYTAPKSLLKDMPSA PETDADLGFRKSQRIIDREDDYRQRRLNRIISPERHDPFAAGEKTPDPSVRTYAEIMQEETLKRKKEETLKLIANKKKEE EEAAKAAPAPPADKADKDKAAAAQKRRNRWDMSQEDGAAKKAKTSDWEDETTPGRWDATPTPGRVIDATPGRRNRWDETP TPGRLVDSDATPAGGATPGATPAGMAWDATPKLAGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGI ELATPTPGQLHGGAITPEQYNLLRWERDIEERNRPLTDEELDAMFPMEGYKVLDPPASYVPIRTPARKLLATPTPLGTPG FHIPEENPLQRYDIPKELPGGLPFMKPEDYQYFGSLLNEDNEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDK AREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSK AAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPH LRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYA SYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRTDILPEFFRNFWVRRMALDRRNYKQLVETTVEIAN KVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSL GQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIV NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTF GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEM GKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVAL GAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALEDEHSNVYSRPELMMFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 588 | 588 | - | – | |
| Coils | 5 | 25 | 21 | - | – | |
| PANTHER | 58 | 1263 | 1206 | 0.0 | ||
| MobiDBLite | 109 | 134 | 26 | - | – | |
| Coils | 139 | 163 | 25 | - | – | |
| MobiDBLite | 154 | 303 | 150 | - | – | |
| MobiDBLite | 154 | 213 | 60 | - | – | |
| Pfam | 280 | 407 | 128 | 4.3E-43 | ||
| SUPERFAMILY | 458 | 1251 | 794 | 2.21E-101 | ||
| Gene3D | 577 | 689 | 113 | 1.5E-7 | ||
| Phobius | 589 | 610 | 22 | - | – | |
| Phobius | 611 | 621 | 11 | - | – | |
| Phobius | 622 | 641 | 20 | - | – | |
| Phobius | 642 | 660 | 19 | - | – | |
| ProSiteProfiles | 644 | 682 | 39 | 8.831 | ||
| Phobius | 661 | 679 | 19 | - | – | |
| Phobius | 680 | 699 | 20 | - | – | |
| Phobius | 700 | 722 | 23 | - | – | |
| Gene3D | 711 | 1157 | 447 | 2.6E-24 | ||
| Phobius | 723 | 1263 | 541 | - | – | |
| SMART | 840 | 1075 | 236 | 0.0042 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi6g1v0351100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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