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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0351100 |
| Transcript ID | LotjaGi6g1v0351100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit 1; TAIR: AT5G64270.1 splicing factor; Swiss-Prot: sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1; TrEMBL-Plants: tr|V7BPY5|V7BPY5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66311495..66315274) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCGAAGACGCAGGAAGACAGGAAGAAGATGGAGCAGGAACTCGCTTCCCTCACCTCCGTCACCTTCGACACCGATCT CTATGGCGCTAGCGACAGAGACGCATACCACACTTCAATCCCCGCCAACGACGACGACGACAATCTCGACGCCATCGACA ACGAGGTCGCTCGCAAACTCGCTTCCTACACCGCCCCCAAAAGCCTCCTCAAGGACATGCCCTCCGCCCCCGAAACCGAC GCCGATTTGGGTTTCCGCAAGTCGCAGAGGATTATTGATCGGGAAGATGATTACCGTCAGAGGAGGCTCAACCGCATCAT CTCCCCGGAGCGTCATGATCCCTTCGCCGCCGGTGAGAAGACGCCGGACCCCTCTGTTAGGACCTACGCTGAGATCATGC AGGAGGAGACGCTGAAGAGGAAGAAGGAGGAGACGCTGAAATTGATTGCTAACAAGAAGAAGGAGGAGGAAGAGGCTGCC AAAGCTGCACCTGCACCTCCTGCGGATAAGGCGGATAAGGATAAGGCGGCGGCGGCGCAGAAGAGGAGGAATAGGTGGGA TATGTCTCAGGAAGATGGGGCGGCGAAGAAGGCGAAAACCTCTGATTGGGAGGACGAGACCACGCCTGGGCGGTGGGATG CCACTCCGACGCCGGGGAGAGTGATAGATGCGACTCCAGGGAGGAGGAATAGGTGGGATGAGACTCCTACACCTGGTAGA TTGGTGGATTCTGATGCTACACCTGCTGGTGGTGCTACTCCTGGTGCTACCCCTGCTGGAATGGCTTGGGATGCTACCCC GAAGCTTGCTGGGATGGCTACTCCAACTCCTAAGCGGCAAAGATCAAGGTGGGATGAAACACCTGCTACTATGGGCAGTG CTACTCCTTTGCCTGGTGCCACTCCTGCTGCTGCTTACACTCCTGGTGTTACCCCTGTTGGTGGGATTGAACTTGCTACC CCAACTCCGGGGCAATTGCACGGTGGTGCCATCACTCCGGAGCAGTACAATCTTTTGAGGTGGGAGAGGGATATTGAAGA GAGGAATCGTCCATTGACTGATGAAGAGCTTGATGCTATGTTTCCAATGGAAGGGTATAAGGTGCTGGACCCTCCTGCTT CCTATGTGCCAATCAGGACACCTGCGAGGAAGCTTCTTGCTACTCCAACTCCGTTGGGGACTCCTGGTTTTCATATCCCT GAGGAGAATCCCCTGCAACGGTACGATATTCCGAAGGAATTGCCTGGTGGTTTGCCGTTCATGAAGCCTGAGGACTACCA GTATTTTGGATCACTGTTGAATGAAGATAATGAAGAGGAGTTGTCACCGGATGAGCAGAAAGAGCGGAAGATTATGAAGC TTCTTCTGAAAGTGAAGAATGGGACACCTCCTCAGAGGAAAACTGCGTTGAGACAGCTTACTGATAAGGCTCGTGAGTTT GGTGCTGGCCCATTGTTTAACCGGATTCTGCCGTTGCTCATGCAGCCTACTCTGGAGGATCAAGAGAGACATCTTTTGGT CAAGGTAATTGATAGAGTTCTGTATAAATTGGATGAATTGGTTCGCCCTTATGTGCATAAGATTCTTGTTGTGATTGAAC CCTTGTTGATTGATGAAGACTACTATGCCCGTGTGGAGGGGAGGGAAATCATATCTAATCTTAGCAAAGCTGCTGGGCTG GCCACAATGATTGCTGCTATGCGGCCTGACATTGACAATATTGATGAGTATGTTAGGAACACTACTGCTAGAGCTTTCAG TGTTGTTGCTTCTGCTCTTGGTATTCCTGCATTGTTGCCTTTCCTGAAGGCTGTCTGTCAAAGTAAGAAATCATGGCAAG CTCGGCACACGGGGATTAAAATTGTGCAGCAGATTGCCATTTTGATTGGTTGTGCTGTACTGCCCCATCTGAGATCTCTT GTGGAAATTATAGAACATGGTTTGAATGATGAGAATCAGAAGGTGAGAACAATTACTGCGCTGTCTCTTGCTGCTCTTGC TGAGGCTGCTGCTCCTTATGGCATTGAAAGTTTTGACTCTGTGTTGAAGCCACTGTGGAAGGGTATTAGGCAGCACCGTG GGAAGGTGCTGGCTGCGTTTTTGAAGGCAATTGGGTTTATTATTCCATTGATGGAAGCCCTTTATGCTAGTTACTATACT AAGGAGGTCATGCTTATTTTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTCCTGAAAGTGGTGAA GCAGTGTGTGAGCACCGAGGGTGTGGAAGCTGATTATATTAGAACTGATATTCTTCCTGAATTTTTCAGGAACTTCTGGG TCAGGAGGATGGCTTTGGATAGAAGGAACTACAAGCAACTCGTGGAGACAACAGTAGAGATAGCCAACAAAGTTGGTGTT GCTGATATTGTTGGAAGAATTGTGGAAGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAAACTATTGA GAAGGTGGTCACTAACTTGGGATCATCTGATATAGATGCACGGTTGGAAGAGCTTTTGATAGATGGTATTCTCTATGCCT TCCAAGAGCAGACCAGTGATGATGCTAATGTGATGCTCAATGGATTTGGTGCAGTAGTGAACTCGCTTGGCCAGAGAGTG AAACCATATCTTCCACAGATTTGTGGTACCATCAAGTGGCGGTTAAACAACAAGAGTGCAAAGGTGAGACAGCAAGCTGC GGACCTCATCTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAGCTGATGGGTCATCTTGGTGTTGTCTTGT ACGAGTATTTAGGAGAAGAGTATCCTGAAGTTTTAGGGTCAATTCTGGGAGCTCTCAAATCAATTGTCAATGTTATTGGT ATGACGAAGATGACTCCGCCTATTAAGGATTTGCTTCCCAGGTTAACTCCAATTTTGAAGAATAGGCATGAGAAAGTCCA GGAGAACTGTATTGACCTTGTGGGTAGGATTGCCGATCGTGGGGCTGAGTTCGTACCTGCAAGAGAATGGATGAGGATCT GTTTTGAACTTCTTGAGATGCTTAAGGCACATAAGAAGGGAATTCGTAGAGCGACGGTCAACACTTTTGGATATATTGCG AAGGCCATTGGACCACAAGATGTCCTGGCAACTCTATTGAACAATCTAAAGGTGCAGGAGAGGCAGAACCGTGTCTGCAC AACTGTGGCAATTGCAATAGTTGCGGAAACATGTTCACCCTTCACAGTTTTGCCAGCATTGATGAATGAGTATCGTGTGC CAGAGCTTAATGTGCAAAACGGTGTTCTCAAATCCCTGTCTTTCCTCTTTGAGTACATTGGTGAAATGGGTAAGGACTAC ATCTATGCGGTGACTCCTCTGCTTGAGGATGCTCTTATGGACAGGGACTTGGTTCATAGGCAGACAGCTGCTTCTGCCGT GAAGCACATGGCACTGGGAGTGGCTGGTTTGGGTTGTGAAGACGCGCTGGTCCATTTGCTGAACTATGTCTGGCCAAACA TTTTTGAAACTTCTCCACATGTGATCAATGCTGTGATGGAAGCAATTGAAGGGATGAGGGTAGCTTTGGGTGCTGCTGTT GTTCTTAATTACTGTCTCCAAGGGCTGTTCCACCCTGCTAGAAAAGTGAGGGAGGTGTACTGGAAGATCTATAACTCACT CTATATTGGAGCTCAGGATGCTCTTGTAGCAGCATACCCTGCCTTGGAGGATGAGCACAGCAACGTATACAGTAGACCAG AGTTGATGATGTTCATCTAG
CDS sequence (LotjaGi6g1v0351100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGGAACTCGCTTCCCTCACCTCCGTCACCTTCGACACCGATCTCTATGGCGCTAGCGACAGAGACGCATACCA CACTTCAATCCCCGCCAACGACGACGACGACAATCTCGACGCCATCGACAACGAGGTCGCTCGCAAACTCGCTTCCTACA CCGCCCCCAAAAGCCTCCTCAAGGACATGCCCTCCGCCCCCGAAACCGACGCCGATTTGGGTTTCCGCAAGTCGCAGAGG ATTATTGATCGGGAAGATGATTACCGTCAGAGGAGGCTCAACCGCATCATCTCCCCGGAGCGTCATGATCCCTTCGCCGC CGGTGAGAAGACGCCGGACCCCTCTGTTAGGACCTACGCTGAGATCATGCAGGAGGAGACGCTGAAGAGGAAGAAGGAGG AGACGCTGAAATTGATTGCTAACAAGAAGAAGGAGGAGGAAGAGGCTGCCAAAGCTGCACCTGCACCTCCTGCGGATAAG GCGGATAAGGATAAGGCGGCGGCGGCGCAGAAGAGGAGGAATAGGTGGGATATGTCTCAGGAAGATGGGGCGGCGAAGAA GGCGAAAACCTCTGATTGGGAGGACGAGACCACGCCTGGGCGGTGGGATGCCACTCCGACGCCGGGGAGAGTGATAGATG CGACTCCAGGGAGGAGGAATAGGTGGGATGAGACTCCTACACCTGGTAGATTGGTGGATTCTGATGCTACACCTGCTGGT GGTGCTACTCCTGGTGCTACCCCTGCTGGAATGGCTTGGGATGCTACCCCGAAGCTTGCTGGGATGGCTACTCCAACTCC TAAGCGGCAAAGATCAAGGTGGGATGAAACACCTGCTACTATGGGCAGTGCTACTCCTTTGCCTGGTGCCACTCCTGCTG CTGCTTACACTCCTGGTGTTACCCCTGTTGGTGGGATTGAACTTGCTACCCCAACTCCGGGGCAATTGCACGGTGGTGCC ATCACTCCGGAGCAGTACAATCTTTTGAGGTGGGAGAGGGATATTGAAGAGAGGAATCGTCCATTGACTGATGAAGAGCT TGATGCTATGTTTCCAATGGAAGGGTATAAGGTGCTGGACCCTCCTGCTTCCTATGTGCCAATCAGGACACCTGCGAGGA AGCTTCTTGCTACTCCAACTCCGTTGGGGACTCCTGGTTTTCATATCCCTGAGGAGAATCCCCTGCAACGGTACGATATT CCGAAGGAATTGCCTGGTGGTTTGCCGTTCATGAAGCCTGAGGACTACCAGTATTTTGGATCACTGTTGAATGAAGATAA TGAAGAGGAGTTGTCACCGGATGAGCAGAAAGAGCGGAAGATTATGAAGCTTCTTCTGAAAGTGAAGAATGGGACACCTC CTCAGAGGAAAACTGCGTTGAGACAGCTTACTGATAAGGCTCGTGAGTTTGGTGCTGGCCCATTGTTTAACCGGATTCTG CCGTTGCTCATGCAGCCTACTCTGGAGGATCAAGAGAGACATCTTTTGGTCAAGGTAATTGATAGAGTTCTGTATAAATT GGATGAATTGGTTCGCCCTTATGTGCATAAGATTCTTGTTGTGATTGAACCCTTGTTGATTGATGAAGACTACTATGCCC GTGTGGAGGGGAGGGAAATCATATCTAATCTTAGCAAAGCTGCTGGGCTGGCCACAATGATTGCTGCTATGCGGCCTGAC ATTGACAATATTGATGAGTATGTTAGGAACACTACTGCTAGAGCTTTCAGTGTTGTTGCTTCTGCTCTTGGTATTCCTGC ATTGTTGCCTTTCCTGAAGGCTGTCTGTCAAAGTAAGAAATCATGGCAAGCTCGGCACACGGGGATTAAAATTGTGCAGC AGATTGCCATTTTGATTGGTTGTGCTGTACTGCCCCATCTGAGATCTCTTGTGGAAATTATAGAACATGGTTTGAATGAT GAGAATCAGAAGGTGAGAACAATTACTGCGCTGTCTCTTGCTGCTCTTGCTGAGGCTGCTGCTCCTTATGGCATTGAAAG TTTTGACTCTGTGTTGAAGCCACTGTGGAAGGGTATTAGGCAGCACCGTGGGAAGGTGCTGGCTGCGTTTTTGAAGGCAA TTGGGTTTATTATTCCATTGATGGAAGCCCTTTATGCTAGTTACTATACTAAGGAGGTCATGCTTATTTTGATTCGTGAA TTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTCCTGAAAGTGGTGAAGCAGTGTGTGAGCACCGAGGGTGTGGAAGC TGATTATATTAGAACTGATATTCTTCCTGAATTTTTCAGGAACTTCTGGGTCAGGAGGATGGCTTTGGATAGAAGGAACT ACAAGCAACTCGTGGAGACAACAGTAGAGATAGCCAACAAAGTTGGTGTTGCTGATATTGTTGGAAGAATTGTGGAAGAT CTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAAACTATTGAGAAGGTGGTCACTAACTTGGGATCATCTGA TATAGATGCACGGTTGGAAGAGCTTTTGATAGATGGTATTCTCTATGCCTTCCAAGAGCAGACCAGTGATGATGCTAATG TGATGCTCAATGGATTTGGTGCAGTAGTGAACTCGCTTGGCCAGAGAGTGAAACCATATCTTCCACAGATTTGTGGTACC ATCAAGTGGCGGTTAAACAACAAGAGTGCAAAGGAACAGCTGATGGGTCATCTTGGTGTTGTCTTGTACGAGTATTTAGG AGAAGAGTATCCTGAAGTTTTAGGGTCAATTCTGGGAGCTCTCAAATCAATTGTCAATGTTATTGGTATGACGAAGATGA CTCCGCCTATTAAGGATTTGCTTCCCAGGTTAACTCCAATTTTGAAGAATAGGCATGAGAAAGTCCAGGAGAACTGTATT GACCTTGTGGGTAGGATTGCCGATCGTGGGGCTGAGTTCGTACCTGCAAGAGAATGGATGAGGATCTGTTTTGAACTTCT TGAGATGCTTAAGGCACATAAGAAGGGAATTCGTAGAGCGACGGTCAACACTTTTGGATATATTGCGAAGGCCATTGGAC CACAAGATGTCCTGGCAACTCTATTGAACAATCTAAAGGTGCAGGAGAGGCAGAACCGTGTCTGCACAACTGTGGCAATT GCAATAGTTGCGGAAACATGTTCACCCTTCACAGTTTTGCCAGCATTGATGAATGAGTATCGTGTGCCAGAGCTTAATGT GCAAAACGGTGTTCTCAAATCCCTGTCTTTCCTCTTTGAGTACATTGGTGAAATGGGTAAGGACTACATCTATGCGGTGA CTCCTCTGCTTGAGGATGCTCTTATGGACAGGGACTTGGTTCATAGGCAGACAGCTGCTTCTGCCGTGAAGCACATGGCA CTGGGAGTGGCTGGTTTGGGTTGTGAAGACGCGCTGGTCCATTTGCTGAACTATGTCTGGCCAAACATTTTTGAAACTTC TCCACATGTGATCAATGCTGTGATGGAAGCAATTGAAGGGATGAGGGTAGCTTTGGGTGCTGCTGTTGTTCTTAATTACT GTCTCCAAGGGCTGTTCCACCCTGCTAGAAAAGTGAGGGAGGTGTACTGGAAGATCTATAACTCACTCTATATTGGAGCT CAGGATGCTCTTGTAGCAGCATACCCTGCCTTGGAGGATGAGCACAGCAACGTATACAGTAGACCAGAGTTGATGATGTT CATCTAG
Protein sequence (LotjaGi6g1v0351100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQELASLTSVTFDTDLYGASDRDAYHTSIPANDDDDNLDAIDNEVARKLASYTAPKSLLKDMPSAPETDADLGFRKSQR IIDREDDYRQRRLNRIISPERHDPFAAGEKTPDPSVRTYAEIMQEETLKRKKEETLKLIANKKKEEEEAAKAAPAPPADK ADKDKAAAAQKRRNRWDMSQEDGAAKKAKTSDWEDETTPGRWDATPTPGRVIDATPGRRNRWDETPTPGRLVDSDATPAG GATPGATPAGMAWDATPKLAGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGIELATPTPGQLHGGA ITPEQYNLLRWERDIEERNRPLTDEELDAMFPMEGYKVLDPPASYVPIRTPARKLLATPTPLGTPGFHIPEENPLQRYDI PKELPGGLPFMKPEDYQYFGSLLNEDNEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRIL PLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPD IDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIRE FQSPDEEMKKIVLKVVKQCVSTEGVEADYIRTDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVED LKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGT IKWRLNNKSAKEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCI DLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAI AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMA LGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGA QDALVAAYPALEDEHSNVYSRPELMMFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 574 | 574 | - | – | |
| PANTHER | 44 | 1228 | 1185 | 0.0 | ||
| Coils | 125 | 149 | 25 | - | – | |
| MobiDBLite | 140 | 199 | 60 | - | – | |
| MobiDBLite | 140 | 289 | 150 | - | – | |
| Pfam | 266 | 393 | 128 | 4.9E-43 | ||
| SUPERFAMILY | 444 | 1216 | 773 | 1.73E-93 | ||
| Gene3D | 561 | 680 | 120 | 1.1E-7 | ||
| Phobius | 575 | 596 | 22 | - | – | |
| Phobius | 597 | 607 | 11 | - | – | |
| Phobius | 608 | 627 | 20 | - | – | |
| Phobius | 628 | 646 | 19 | - | – | |
| ProSiteProfiles | 630 | 668 | 39 | 8.831 | ||
| Phobius | 647 | 665 | 19 | - | – | |
| Phobius | 666 | 685 | 20 | - | – | |
| Phobius | 686 | 708 | 23 | - | – | |
| Gene3D | 688 | 1122 | 435 | 4.1E-16 | ||
| Phobius | 709 | 1228 | 520 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi6g1v0351100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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