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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1514800 |
| Transcript ID | Lj1g3v1514800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Seryl-tRNA synthetase [Medicago truncatula] gi|357465105|ref|XP_003602834.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 47 | 73 | 27 | – | – | |
| PANTHER | 68 | 513 | 446 | 6.30E-241 | – | |
| PANTHER | 68 | 513 | 446 | 6.30E-241 | ||
| PIRSF | 78 | 512 | 435 | 1.60E-137 | ||
| SUPERFAMILY | 79 | 188 | 110 | 1.05E-20 | ||
| Pfam | 79 | 182 | 104 | 4.10E-20 | ||
| Gene3D | 79 | 180 | 102 | 1.30E-17 | ||
| TIGRFAM | 79 | 503 | 425 | 2.80E-129 | ||
| Coils | 144 | 178 | 35 | – | – | |
| Gene3D | 181 | 506 | 326 | 1.30E-132 | – | |
| SUPERFAMILY | 193 | 504 | 312 | 2.62E-78 | – | |
| CDD | 197 | 503 | 307 | 1.46E-164 | ||
| ProSiteProfiles | 213 | 496 | 284 | 21.554 | ||
| Pfam | 296 | 486 | 191 | 4.50E-27 | ||
| PRINTS | 338 | 350 | 13 | 4.90E-22 | ||
| PRINTS | 350 | 363 | 14 | 4.90E-22 | ||
| PRINTS | 390 | 403 | 14 | 4.90E-22 | ||
| PRINTS | 407 | 423 | 17 | 4.90E-22 | ||
| PRINTS | 425 | 441 | 17 | 4.90E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Serine-tRNA ligase activity | Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Seryl-tRNA aminoacylation | The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. The seryl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a serine-accetping tRNA. |
Expression pattern of Lj1g3v1514800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1514800.2, powered by CORGI.
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