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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0509100 |
| Transcript ID | LotjaGi1g1v0509100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A151TCE6|A0A151TCE6_CAJCA Chaperone protein clpB 2; Found in the gene: LotjaGi1g1v0509100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102813964..102817888) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGGCGAAGGGGGGAGAAGTGGGCATGGAATGGAAATTATTGGTTTAAGTTTCTATCCCAATTTTCAATTTCACTA CAATGATATCTATTATGCCTGCCTGGTTTTAATTGTATTTTTAAAAGAAAAATGTAATATTTTCTTATTTCATCCTCCAC TGGAAGTTTATATATTGGGTTAGAGTTGTATATTGACCTTATGCACTGGTCTCTTTTCAGCTTATATCCCTTGATATGGG TGCACTTATTGCTGGAGCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCTG ATGGCCAGACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTAATAACTAATAAGCTTCAAAGATATTT CCATTTTCAGATAATTGACTTTTGGGTATTCTAAAATCAAACTATTACTTGATGCAAATTGGTTTAAATACCGATAGATC AACATGGATTCTGATCATAGATGATAAATTTTAATTGTCATTCTCTTAAAATTTGACTTCTGTATGTAGCTGATTCCACA GAAATTGAAAATTAATATGCTGATTAAGGATTTAATAACAATTATAATCTGTCACACGCTAGGTGCCACAAATGGTGCTA TGGATGCTGGAAATCTCTTAAAGCCCATGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTGGATGAGTAT AGGAAGTATATTGAGAAGGACCCTGCGCTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGTCGAAGATAC CATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAG CTGCAATTCTCTCCGATCGATATATCAGCGGGAGATTTTTGCCTGACAAAGGTAATAATTACTTATTTAAATTGCATAAG GTCTGAAGTTTCAGGAGCATTTACACTGATTCTGTTGTTAATACTTAAATTATTATTTTGACACCTTACAAATTATATAT CAATGATAATTGAATTCTGGATTAGAGCATTTTCTGACTGGTTTAAGCATGCTTTTACGAATACTGTGATTTAAGCATGC CATTGTTCTTAAAAAGATTGAAATGTTCAGGCTTAGTTACCAATGGGATGTAGATGATATAAACCGCTATTTAATCATTA TGAAAGGATCTTTAAATCAATAGAACTTGGCTACTTTTAGGAAGATACATGCTATATGACAGTTTGAAGGATTGGTTTTA AATGATCAAATTATAGTTCTGATTATCTCTATTTATTACACTTTTATTTAGTGAAATTTCTTTTTGGACTGGTATCAACA ATGATCATAAAGTACTTATTGCTCCCCATTTCCAAATTACAGCTATTGATCTAGTTGATGAGGCAGCTGCCAAACTGAAA ATGGAAATAACTTCTAAACCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGAGATGGAGAGACTCTCTCT CATGAATGATACCGACAAGGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTCTCTTGAAAGAGAAACAGG TTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAAGAAGAGGTGTGTGTATAT ACAGTTTTTTCTTCTTCCTTTGGTTTAAGGTTCTCTTTTTCATTTTAAATAAGTGATTGTTTAAAAGTAGGGTAGGATGA ATAGGATTCTGTAGTGTTTCCATGATGTGGAAAACTAGTGTAAGTATATGAATTAAGTTGGTAATTATAATTGAAATTAG AAATTAAATTAATTATATTAACTTATGTTCAACAGCAGATACTAATGATTTATGTATTTATGCATCAGATAGACAGGGTG AATCTTGAGATCCAACAGGCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTATGGCAGCCTGAACTCCTT GCAACGACAACTCGAAACTGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTATGCTGAGAGAGGAAGTTA CAGGAAGTGATATTGCTGAAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAACAATCCGAAAGGGAGAAG TTGTTGTATTTAGAGGAAGTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGCAGTAGCCGAGGCTATCCA ACGTTCTAGAGCCGGTCTCTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGACCTACAGGTGTAGGAAAGA CAGAGCTGGCTAAGACACTTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATTGACATGAGTGAGTACATG GAAAAGCACGCAGTTTCAAGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTCACTGAAAC AGTTCGTCGCAGACCGTATTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATGTCTTCAATGTGTTCCTTC AAATTCTGGATGATGGAAGAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACAGTTATCATTATGACCTCA AATGTTGGATCACAGTACATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTATGAAACAATAAAAAACCG GGTAATGGATGCTGCAAGGTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATATTGTTTTCCAGCCTTTAG ACCGTGATCAAATTAGTAGCATTGTCAGATTACAGGTAATCTCACTCTCCCCTCCCTCTCAAAAATTGTTCAATTGCTGT GTTCTAACAGTTATTACAAATTCTTGAGTTTAGGTTAACTTGCATTCATGAGTACTTATTCGTACAATGCGTTCAGGTGA ACAACTTAATTGAACACTTATAGGTATAAGTACTTATTCATAAGCTAATATGAACAATTTATGAAAATAAGCTCAAAACA ACTTATTGGGTATGTCATAAACTATTTACATAAGCTCTTCCATACACTTGCATAGACATTTATGTTATAGGATAAGTTCA AATAAACTATTTCAAAATCCAAACATTGAGATAAGTTCAAGTCAAAATACAGGCTGCTATGTTCACACTCCTCAGCCTCC TCTCTTCCAAAAATTGTTTGATTCCTGTTTTCTAACAATTATTACTAGCATTGTTTATTGTTTAGTTCTTGTGTATCTGT AAGAAACTAGTTTGGGATTTCTTTTGCGATCATTGAGAAGCTTGAAGTTAAAATAAGGACTTCTATGTTCTCACCAAAAT AAGACACATGGTGTGTGGGTTTGCTATAATTCTAAGCTTCAAACCATGTTAGTGGACCTTAAGAAAACATCGACATTTAA CCGGTTTTATGTCTCTGATGTTTCGTGTTTGATTTGTGGAAGTACTAGCTAAGAAACTGTCAATTTCATTAAGAGTCTTC TTTCAAGATTGCAAGTTATTCTTGTATGGTACATGCCTAATCTCTCTCTTTTCCGTTTTCTTGGGTTTATTACAGTTGGA GCGTGTTCAGAAGAGAATTGCAGACCGCAAGATGAAAATCCATGTGACAGATGCAGCTGTCCAAGTTCTTGGGAGTTTGG GGTATGACCCTAACTATGGTGCTAGGCCAGTGAAGCGAGTGATTCAGCAGAATGTAGAGAATGAACTTGCCAAGGGTATT TTGAGAGGAGAGTTTAAGGATGAGGACACAATATTAATAGACACTGAACTCACAGCATTTGGCAAAGGTCAACTTCCCCA GCAAAAGCTAGTTTTTAGGAAGCTTGAGGCTGAGTCAGAACCCACCACTCGTGACAGCTTGGAACCATCTCCTAGTACCA ATTGA
CDS sequence (LotjaGi1g1v0509100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCACTTATTGCTGGAGCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGA ATCTGATGGCCAGACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTGCCACAAATGGTGCTATGGATG CTGGAAATCTCTTAAAGCCCATGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTGGATGAGTATAGGAAG TATATTGAGAAGGACCCTGCGCTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGTCGAAGATACCATTTC AATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTGCAA TTCTCTCCGATCGATATATCAGCGGGAGATTTTTGCCTGACAAAGCTATTGATCTAGTTGATGAGGCAGCTGCCAAACTG AAAATGGAAATAACTTCTAAACCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGAGATGGAGAGACTCTC TCTCATGAATGATACCGACAAGGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTCTCTTGAAAGAGAAAC AGGTTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAAGAAGAGATAGACAGG GTGAATCTTGAGATCCAACAGGCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTATGGCAGCCTGAACTC CTTGCAACGACAACTCGAAACTGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTATGCTGAGAGAGGAAG TTACAGGAAGTGATATTGCTGAAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAACAATCCGAAAGGGAG AAGTTGTTGTATTTAGAGGAAGTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGCAGTAGCCGAGGCTAT CCAACGTTCTAGAGCCGGTCTCTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGACCTACAGGTGTAGGAA AGACAGAGCTGGCTAAGACACTTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATTGACATGAGTGAGTAC ATGGAAAAGCACGCAGTTTCAAGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTCACTGA AACAGTTCGTCGCAGACCGTATTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATGTCTTCAATGTGTTCC TTCAAATTCTGGATGATGGAAGAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACAGTTATCATTATGACC TCAAATGTTGGATCACAGTACATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTATGAAACAATAAAAAA CCGGGTAATGGATGCTGCAAGGTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATATTGTTTTCCAGCCTT TAGACCGTGATCAAATTAGTAGCATTGTCAGATTACAGTTGGAGCGTGTTCAGAAGAGAATTGCAGACCGCAAGATGAAA ATCCATGTGACAGATGCAGCTGTCCAAGTTCTTGGGAGTTTGGGGTATGACCCTAACTATGGTGCTAGGCCAGTGAAGCG AGTGATTCAGCAGAATGTAGAGAATGAACTTGCCAAGGGTATTTTGAGAGGAGAGTTTAAGGATGAGGACACAATATTAA TAGACACTGAACTCACAGCATTTGGCAAAGGTCAACTTCCCCAGCAAAAGCTAGTTTTTAGGAAGCTTGAGGCTGAGTCA GAACCCACCACTCGTGACAGCTTGGAACCATCTCCTAGTACCAATTGA
Protein sequence (LotjaGi1g1v0509100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRK YIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL KMEITSKPTALDEINRAVLKMEMERLSLMNDTDKASKDRLSRLEAELSLLKEKQVELTEQWEHEKSVMTRIQSIKEEIDR VNLEIQQAEREYDLNHAAELKYGSLNSLQRQLETAEKELDEYMNSGESMLREEVTGSDIAEIVSKWTGIPVSKLQQSERE KLLYLEEVLHRRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKTLASYMFNTEEALVRIDMSEY MEKHAVSRLIGAPPGYVGYEEGGQLTETVRRRPYSVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT SNVGSQYILNTDDDSVPKESTYETIKNRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQKRIADRKMK IHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILIDTELTAFGKGQLPQQKLVFRKLEAES EPTTRDSLEPSPSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 106 | 106 | 5.8E-39 | – | |
| PANTHER | 1 | 641 | 641 | 0.0 | – | |
| PANTHER | 1 | 641 | 641 | 0.0 | – | |
| CDD | 1 | 95 | 95 | 1.33309E-7 | – | |
| SUPERFAMILY | 3 | 308 | 306 | 7.27E-71 | ||
| Pfam | 8 | 94 | 87 | 2.1E-5 | ||
| ProSitePatterns | 53 | 65 | 13 | - | ||
| Pfam | 101 | 203 | 103 | 9.1E-34 | ||
| Gene3D | 107 | 307 | 201 | 5.5E-71 | – | |
| Coils | 193 | 220 | 28 | - | – | |
| Coils | 231 | 251 | 21 | - | – | |
| Coils | 258 | 292 | 35 | - | – | |
| SUPERFAMILY | 309 | 615 | 307 | 2.18E-82 | ||
| Gene3D | 312 | 532 | 221 | 7.0E-87 | – | |
| CDD | 334 | 482 | 149 | 8.87095E-19 | – | |
| Pfam | 359 | 527 | 169 | 1.8E-56 | ||
| SMART | 360 | 535 | 176 | 1.6E-8 | ||
| PRINTS | 364 | 382 | 19 | 7.8E-41 | ||
| ProSitePatterns | 394 | 412 | 19 | - | ||
| PRINTS | 409 | 427 | 19 | 7.8E-41 | ||
| PRINTS | 438 | 456 | 19 | 7.8E-41 | ||
| PRINTS | 471 | 485 | 15 | 7.8E-41 | ||
| Pfam | 534 | 613 | 80 | 8.6E-26 | ||
| SMART | 534 | 620 | 87 | 1.1E-33 | ||
| Gene3D | 534 | 630 | 97 | 1.2E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0509100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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