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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR041546
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We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.653s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0330800.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G51070.1 Clp ATPase; Swiss-Prot: sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic; TrEMBL-Plants: tr|I1JXT1|I1JXT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0330800 LjG1.1_chr1 78660324 78667371 -
2 domain predictions
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LotjaGi1g1v0333900.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79247438 79255010 +
2 domain predictions
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LotjaGi1g1v0333900.2
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A0L9UEV5|A0A0L9UEV5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79247590 79254989 +
2 domain predictions
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LotjaGi1g1v0333900.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900 LjG1.1_chr1 79248894 79254523 +
2 domain predictions
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LotjaGi1g1v0378600.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|I1JU82|I1JU82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0378600 LjG1.1_chr1 85840257 85852851 -
2 domain predictions
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LotjaGi1g1v0509100.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A151TCE6|A0A151TCE6_CAJCA Chaperone protein clpB 2; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813727 102820891 -
2 domain predictions
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LotjaGi1g1v0509100.2
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A151TCE6|A0A151TCE6_CAJCA Chaperone protein clpB 2; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102817888 -
2 domain predictions
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LotjaGi1g1v0509100.3
n.a. Chaperone clpb, putative; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJB5|A0A1J7HJB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819645 -
2 domain predictions
 –
LotjaGi1g1v0509100.4
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A072U702|A0A072U702_MEDTR Casein lytic proteinase B3; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819967 -
2 domain predictions
 –
LotjaGi1g1v0509100.5
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A072U702|A0A072U702_MEDTR Casein lytic proteinase B3; Found in the gene: LotjaGi1g1v0509100 LjG1.1_chr1 102813964 102819968 -
2 domain predictions
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LotjaGi1g1v0684200.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125107647 125113747 +
2 domain predictions
 –
LotjaGi1g1v0684200.2
n.a. ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108085 125113398 +
2 domain predictions
 –
LotjaGi1g1v0684200.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108118 125113398 +
2 domain predictions
 –
LotjaGi1g1v0684200.4
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108118 125113528 +
2 domain predictions
 –
LotjaGi1g1v0684200.5
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200 LjG1.1_chr1 125108142 125113551 +
2 domain predictions
 –
LotjaGi1g1v0757900_LC.2
n.a. Chaperone ClpB, putative; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|A0A0B2RCK6|A0A0B2RCK6_GLYSO Chaperone protein ClpB4, mitochondrial; Found in the gene: LotjaGi1g1v0757900_LC LjG1.1_chr1 133109991 133114022 +
2 domain predictions
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LotjaGi1g1v0757900_LC.3
n.a. Chaperone ClpB, putative; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|A0A0B2PHE9|A0A0B2PHE9_GLYSO Chaperone protein ClpB4, mitochondrial; Found in the gene: LotjaGi1g1v0757900_LC LjG1.1_chr1 133109991 133114022 +
2 domain predictions
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LotjaGi1g1v0758500_LC.2
n.a. Chaperone ClpB, putative; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|I1JU82|I1JU82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0758500_LC LjG1.1_chr1 133191194 133195224 +
2 domain predictions
 –
LotjaGi1g1v0758500_LC.3
n.a. Chaperone ClpB, putative; TAIR: AT2G25140.1 casein lytic proteinase B4; Swiss-Prot: sp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial; TrEMBL-Plants: tr|A0A0B2PHE9|A0A0B2PHE9_GLYSO Chaperone protein ClpB4, mitochondrial; Found in the gene: LotjaGi1g1v0758500_LC LjG1.1_chr1 133191194 133195224 +
2 domain predictions
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LotjaGi2g1v0264100.1
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346134 73357894 -
2 domain predictions
 –
LotjaGi2g1v0264100.2
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346757 73357132 -
2 domain predictions
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LotjaGi2g1v0264100.3
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346757 73357140 -
2 domain predictions
 –
LotjaGi2g1v0264100.4
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73353704 -
2 domain predictions
 –
LotjaGi2g1v0264100.5
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73353754 -
2 domain predictions
 –
LotjaGi2g1v0264100.6
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73356817 -
2 domain predictions
 –
LotjaGi2g1v0264100.7
n.a. ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 LjG1.1_chr2 73346920 73357140 -
2 domain predictions
 –
LotjaGi4g1v0253800.1
n.a. Chaperone clpb, putative; TAIR: AT1G74310.1 heat shock protein 101; Swiss-Prot: sp|P42730|CLPB1_ARATH Chaperone protein ClpB1; TrEMBL-Plants: tr|A0A1J7I0F2|A0A1J7I0F2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253800 LjG1.1_chr4 60778852 60783093 +
2 domain predictions
 –
LotjaGi4g1v0253800.2
n.a. ATP-dependent chaperone ClpB; TAIR: AT1G74310.1 heat shock protein 101; Swiss-Prot: sp|P42730|CLPB1_ARATH Chaperone protein ClpB1; TrEMBL-Plants: tr|A0A1J7I0F2|A0A1J7I0F2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253800 LjG1.1_chr4 60779470 60781746 +
2 domain predictions
 –
LotjaGi4g1v0253800.3
n.a. Chaperone clpb, putative; TAIR: AT1G74310.1 heat shock protein 101; Swiss-Prot: sp|P42730|CLPB1_ARATH Chaperone protein ClpB1; TrEMBL-Plants: tr|A0A1J7I0F2|A0A1J7I0F2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253800 LjG1.1_chr4 60779470 60782708 +
2 domain predictions
 –
LotjaGi4g1v0421200.1
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625232 79631604 -
2 domain predictions
 –
LotjaGi4g1v0421200.2
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625592 79630944 -
2 domain predictions
 –
LotjaGi4g1v0421200.3
n.a. ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625667 79630935 -
2 domain predictions
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LotjaGi4g1v0421200.4
n.a. ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200 LjG1.1_chr4 79625667 79631104 -
2 domain predictions
 –