Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0509100.4

Overview

Field Value
Gene ID LotjaGi1g1v0509100
Transcript ID LotjaGi1g1v0509100.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|A0A072U702|A0A072U702_MEDTR Casein lytic proteinase B3; Found in the gene: LotjaGi1g1v0509100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:102813964..102819967) extracted from Lotus japonicus Gifu genome v1.2.

TATGCTTCTCCTCCACAGAGTAGTCCAAATGGTGAGTTAAGGACAAAAAGAAGCATTTTTTAATGTGTTTGTGTTTTTTA TTCCAATGGACAAATAAATAGAACCAGGGTACCAGATGTAGAGAATTAATTAACTAATCATTAACTAGCCAAACTCAACC AATTTAACTAGGTGTGGTAGTTTCTAAGCTGATTTGCAATGTGGAGTATTTGTAAATTGGGGTTGTATTTTGTTTGTTAT GTGTGTTGGAGCTTGTGAGGTGTAGTGGTTTGATGTTGGAGTTTTGATGCGATGGCAGATTACACAGCAAGAGTTCACGG AGATGGCGTGGCAGGCGATAGTTTCATCGCCGGAGGTAGCAAAAGAAAACAAGCATCAGATTGTGGAGACAGAGCACTTG ATGAAGGCCTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGGCTACT AGAAGCTACTGATAAGTACATTCAGCGGCAACCAAAGGTGATTATTTTGAATTGAAATTTGAGTACTTGCAGTTTATTTG CTGGTTGAGTTTAACCTTAACTACTAACTGCTACTTATAAGTGGATGAGACATTTGTTATGTGGTTCTTTATTCTGTATT GCAATAACCCAGTTGTATAACTCTTGTTCAATTGTTTAGGTTCTAGGAGAATCAGGTGGCTCAATGTTGGGGCGTGATTT GGAGGCATTGATTCAGAGAGCCAGGGACTACAGGAAAGAGTATGAGGATTCATTTGTGTCAGTTGAGCACTTGGTTCTCG GTTTTTCCCAAGATCAACGACTTGGGAAACAGTTATTTAGAGAATTTCAAGTATCTCAGCAGGCTCTAAAATCTGCAATA GAGTCCATTAGGGGACGCCAGTCGGTTATTGACCAAGGTAGTGGCAATTTCCATGTGTATTCTCTTCTTTTTAAATGTTT TAATATAATGATATAGCTGTGTATTGTGTTCTTTTTATCTTACCTCTTGTTTTAATATAATTTCCATTGAAGTCTCAAGT GTCTTTCAGGAACGCTGCAAATTTTCTATCTTTATATTGCTTTTGACTGCCAACATCTTGTATTGATCATCTGGAATTTT TTTTATAGATCCTGAAGGGAAGTATGAAGCTTTGGAAAAATATGGAAAGGATTTGACGGCAATGGCTAAAGCAGGAAAAC TTGATCCAGTCATAGGAAGAGATGATGAAATACGCAGGTGCATCCAAATTCTTTCCAGGAGAACAAAGAACAATCCTGTG CTAATTGGTGAGCCTGGTGTTGGGAAGACTGCAATTTCTGAAGGGTATGTGCTCATGTCTTCCTCCTAGTTGTTGCCTAT GATTGGATTACATTACTTTTTGTTGAGTACTTTCGCTGTTAAAAATCTTTTTGAAATAAATGTAACAAGTTTCTACCAGG AGTAGCGGGTCTTAACTAACCTGCTTCACAAATACTAGTAACGGCACATGCGGCATGGGTTAGAAAATTGAAACAAAAAA AGAAAAATAAAGGAAAATTTATTTAAAAATATAAAATGCATAGTTATATTTAGTTTGCAAAGGTAATTTCTGGAAAATAT GAAGTGAGATTAAGATTTAAGAGTTTGGCATGAGTGATTAATCTAAAATGGTAACTATGTCACTTTCTTTATTATGTTGA GAGGCTTGTTTCTCTCTTTTCAAATTCTAGGCAAAACTACGGGGTTTTAGGAAAGAAAAATTGGAATATTGGATACCTTG TAAGGTAGCATATTTTAGAATGGAATATCCAATGTTGTATGCTTAGTACTTAGTTTAAACATTAGCCTTTGAAATATGCA TTTAATCAGAGGTTTGAGATTTTCTCAATTTATTGGAAACCAAGCAAGTTCAGTATTTTTGTTCTTCTCTGCAATATAAT TTGGATGTGTTTGTTTGCACTACTCTACATATTGACCTAATTATTCCATTAAAACAGACTTGCTCAGAGGATTGTGCAAG GAGATGTTCCTCAAGCTTTGATGAACCGTAGGGTATGTGCTTTATTTGAATGCTTGGGCTATTCTTGATAGAACTGAGAA TGGATGGCGAAGGGGGGAGAAGTGGGCATGGAATGGAAATTATTGGTTTAAGTTTCTATCCCAATTTTCAATTTCACTAC AATGATATCTATTATGCCTGCCTGGTTTTAATTGTATTTTTAAAAGAAAAATGTAATATTTTCTTATTTCATCCTCCACT GGAAGTTTATATATTGGGTTAGAGTTGTATATTGACCTTATGCACTGGTCTCTTTTCAGCTTATATCCCTTGATATGGGT GCACTTATTGCTGGAGCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCTGA TGGCCAGACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTAATAACTAATAAGCTTCAAAGATATTTC CATTTTCAGATAATTGACTTTTGGGTATTCTAAAATCAAACTATTACTTGATGCAAATTGGTTTAAATACCGATAGATCA ACATGGATTCTGATCATAGATGATAAATTTTAATTGTCATTCTCTTAAAATTTGACTTCTGTATGTAGCTGATTCCACAG AAATTGAAAATTAATATGCTGATTAAGGATTTAATAACAATTATAATCTGTCACACGCTAGGTGCCACAAATGGTGCTAT GGATGCTGGAAATCTCTTAAAGCCCATGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTGGATGAGTATA GGAAGTATATTGAGAAGGACCCTGCGCTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGTCGAAGATACC ATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGC TGCAATTCTCTCCGATCGATATATCAGCGGGAGATTTTTGCCTGACAAAGGTAATAATTACTTATTTAAATTGCATAAGG TCTGAAGTTTCAGGAGCATTTACACTGATTCTGTTGTTAATACTTAAATTATTATTTTGACACCTTACAAATTATATATC AATGATAATTGAATTCTGGATTAGAGCATTTTCTGACTGGTTTAAGCATGCTTTTACGAATACTGTGATTTAAGCATGCC ATTGTTCTTAAAAAGATTGAAATGTTCAGGCTTAGTTACCAATGGGATGTAGATGATATAAACCGCTATTTAATCATTAT GAAAGGATCTTTAAATCAATAGAACTTGGCTACTTTTAGGAAGATACATGCTATATGACAGTTTGAAGGATTGGTTTTAA ATGATCAAATTATAGTTCTGATTATCTCTATTTATTACACTTTTATTTAGTGAAATTTCTTTTTGGACTGGTATCAACAA TGATCATAAAGTACTTATTGCTCCCCATTTCCAAATTACAGCTATTGATCTAGTTGATGAGGCAGCTGCCAAACTGAAAA TGGAAATAACTTCTAAACCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGAGATGGAGAGACTCTCTCTC ATGAATGATACCGACAAGGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTCTCTTGAAAGAGAAACAGGT TGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAAGAAGAGGTGTGTGTATATA CAGTTTTTTCTTCTTCCTTTGGTTTAAGGTTCTCTTTTTCATTTTAAATAAGTGATTGTTTAAAAGTAGGGTAGGATGAA TAGGATTCTGTAGTGTTTCCATGATGTGGAAAACTAGTGTAAGTATATGAATTAAGTTGGTAATTATAATTGAAATTAGA AATTAAATTAATTATATTAACTTATGTTCAACAGCAGATACTAATGATTTATGTATTTATGCATCAGATAGACAGGGTGA ATCTTGAGATCCAACAGGCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTATGGCAGCCTGAACTCCTTG CAACGACAACTCGAAACTGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTATGCTGAGAGAGGAAGTTAC AGGAAGTGATATTGCTGAAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAACAATCCGAAAGGGAGAAGT TGTTGTATTTAGAGGAAGTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGCAGTAGCCGAGGCTATCCAA CGTTCTAGAGCCGGTCTCTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGACCTACAGGTGTAGGAAAGAC AGAGCTGGCTAAGACACTTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATTGACATGAGTGAGTACATGG AAAAGCACGCAGTTTCAAGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTCACTGAAACA GTTCGTCGCAGACCGTATTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATGTCTTCAATGTGTTCCTTCA AATTCTGGATGATGGAAGAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACAGTTATCATTATGACCTCAA ATGTTGGATCACAGTACATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTATGAAACAATAAAAAACCGG GTAATGGATGCTGCAAGGTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATATTGTTTTCCAGCCTTTAGA CCGTGATCAAATTAGTAGCATTGTCAGATTACAGGTAATCTCACTCTCCCCTCCCTCTCAAAAATTGTTCAATTGCTGTG TTCTAACAGTTATTACAAATTCTTGAGTTTAGGTTAACTTGCATTCATGAGTACTTATTCGTACAATGCGTTCAGGTGAA CAACTTAATTGAACACTTATAGGTATAAGTACTTATTCATAAGCTAATATGAACAATTTATGAAAATAAGCTCAAAACAA CTTATTGGGTATGTCATAAACTATTTACATAAGCTCTTCCATACACTTGCATAGACATTTATGTTATAGGATAAGTTCAA ATAAACTATTTCAAAATCCAAACATTGAGATAAGTTCAAGTCAAAATACAGGCTGCTATGTTCACACTCCTCAGCCTCCT CTCTTCCAAAAATTGTTTGATTCCTGTTTTCTAACAATTATTACTAGCATTGTTTATTGTTTAGTTCTTGTGTATCTGTA AGAAACTAGTTTGGGATTTCTTTTGCGATCATTGAGAAGCTTGAAGTTAAAATAAGGACTTCTATGTTCTCACCAAAATA AGACACATGGTGTGTGGGTTTGCTATAATTCTAAGCTTCAAACCATGTTAGTGGACCTTAAGAAAACATCGACATTTAAC CGGTTTTATGTCTCTGATGTTTCGTGTTTGATTTGTGGAAGTACTAGCTAAGAAACTGTCAATTTCATTAAGAGTCTTCT TTCAAGATTGCAAGTTATTCTTGTATGGTACATGCCTAATCTCTCTCTTTTCCGTTTTCTTGGGTTTATTACAGTTGGAG CGTGTTCAGAAGAGAATTGCAGACCGCAAGATGAAAATCCATGTGACAGATGCAGCTGTCCAAGTTCTTGGGAGTTTGGG GTATGACCCTAACTATGGTGCTAGGCCAGTGAAGCGAGTGATTCAGCAGAATGTAGAGAATGAACTTGCCAAGGGTATTT TGAGAGGAGAGTTTAAGGATGAGGACACAATATTAATAGACACTGAACTCACAGCATTTGGCAAAGGTCAACTTCCCCAG CAAAAGCTAGTTTTTAGGAAGCTTGAGGCTGAGTCAGAACCCACCACTCGTGACAGCTTGGAACCATCTCCTAGTACCAA TTGA 

CDS sequence (LotjaGi1g1v0509100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGATGGCAGATTACACAGCAAGAGTTCACGGAGATGGCGTGGCAGGCGATAGTTTCATCGCCGGAGGTAGCAAAAGA AAACAAGCATCAGATTGTGGAGACAGAGCACTTGATGAAGGCCTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCT TTTCCAAGGTTGGGGTGGATAACACTCGGCTACTAGAAGCTACTGATAAGTACATTCAGCGGCAACCAAAGGTTCTAGGA GAATCAGGTGGCTCAATGTTGGGGCGTGATTTGGAGGCATTGATTCAGAGAGCCAGGGACTACAGGAAAGAGTATGAGGA TTCATTTGTGTCAGTTGAGCACTTGGTTCTCGGTTTTTCCCAAGATCAACGACTTGGGAAACAGTTATTTAGAGAATTTC AAGTATCTCAGCAGGCTCTAAAATCTGCAATAGAGTCCATTAGGGGACGCCAGTCGGTTATTGACCAAGATCCTGAAGGG AAGTATGAAGCTTTGGAAAAATATGGAAAGGATTTGACGGCAATGGCTAAAGCAGGAAAACTTGATCCAGTCATAGGAAG AGATGATGAAATACGCAGGTGCATCCAAATTCTTTCCAGGAGAACAAAGAACAATCCTGTGCTAATTGGTGAGCCTGGTG TTGGGAAGACTGCAATTTCTGAAGGACTTGCTCAGAGGATTGTGCAAGGAGATGTTCCTCAAGCTTTGATGAACCGTAGG CTTATATCCCTTGATATGGGTGCACTTATTGCTGGAGCAAAGTACCGTGGTGAATTCGAGGATAGGCTGAAAGCTGTTCT TAAAGAAGTAACAGAATCTGATGGCCAGACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGGGCAGGTGCCACAA ATGGTGCTATGGATGCTGGAAATCTCTTAAAGCCCATGCTTGGTCGGGGGGAGCTGCGCTGTATTGGAGCAACAACACTG GATGAGTATAGGAAGTATATTGAGAAGGACCCTGCGCTAGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTACCGT CGAAGATACCATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAGCTACATCATGGAGTCCGAATTTCTGACAGTGCAC TTGTTGAAGCTGCAATTCTCTCCGATCGATATATCAGCGGGAGATTTTTGCCTGACAAAGCTATTGATCTAGTTGATGAG GCAGCTGCCAAACTGAAAATGGAAATAACTTCTAAACCTACTGCACTTGATGAGATCAATCGGGCAGTCCTGAAAATGGA GATGGAGAGACTCTCTCTCATGAATGATACCGACAAGGCTTCTAAAGATAGGCTGAGTCGTCTTGAGGCAGAGCTCTCTC TCTTGAAAGAGAAACAGGTTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTCATGACTCGTATCCAATCAATCAAA GAAGAGATAGACAGGGTGAATCTTGAGATCCAACAGGCTGAGCGGGAGTATGATCTTAATCATGCTGCTGAATTGAAGTA TGGCAGCCTGAACTCCTTGCAACGACAACTCGAAACTGCAGAGAAGGAATTAGATGAATATATGAACTCTGGGGAGTCTA TGCTGAGAGAGGAAGTTACAGGAAGTGATATTGCTGAAATCGTAAGCAAGTGGACTGGTATACCTGTTTCAAAACTCCAA CAATCCGAAAGGGAGAAGTTGTTGTATTTAGAGGAAGTTCTCCACAGGCGCGTTGTAGGTCAAGACCCTGCAGTTAGGGC AGTAGCCGAGGCTATCCAACGTTCTAGAGCCGGTCTCTCAGATCCTCATCGTCCAATAGCTAGTTTCATGTTTATGGGAC CTACAGGTGTAGGAAAGACAGAGCTGGCTAAGACACTTGCGTCCTACATGTTCAACACAGAAGAAGCACTTGTACGAATT GACATGAGTGAGTACATGGAAAAGCACGCAGTTTCAAGATTGATCGGGGCACCGCCTGGATATGTTGGGTATGAAGAGGG AGGGCAGCTCACTGAAACAGTTCGTCGCAGACCGTATTCTGTTATTTTGTTTGATGAGATTGAGAAGGCACATGCTGATG TCTTCAATGTGTTCCTTCAAATTCTGGATGATGGAAGAGTAACCGACTCACAGGGCCGCACAGTGAGTTTCACCAACACA GTTATCATTATGACCTCAAATGTTGGATCACAGTACATTCTCAACACCGATGACGATAGTGTGCCAAAAGAATCAACTTA TGAAACAATAAAAAACCGGGTAATGGATGCTGCAAGGTCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGACGAGTATA TTGTTTTCCAGCCTTTAGACCGTGATCAAATTAGTAGCATTGTCAGATTACAGTTGGAGCGTGTTCAGAAGAGAATTGCA GACCGCAAGATGAAAATCCATGTGACAGATGCAGCTGTCCAAGTTCTTGGGAGTTTGGGGTATGACCCTAACTATGGTGC TAGGCCAGTGAAGCGAGTGATTCAGCAGAATGTAGAGAATGAACTTGCCAAGGGTATTTTGAGAGGAGAGTTTAAGGATG AGGACACAATATTAATAGACACTGAACTCACAGCATTTGGCAAAGGTCAACTTCCCCAGCAAAAGCTAGTTTTTAGGAAG CTTGAGGCTGAGTCAGAACCCACCACTCGTGACAGCTTGGAACCATCTCCTAGTACCAATTGA 

Protein sequence (LotjaGi1g1v0509100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRWQITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKYIQRQPKVLG ESGGSMLGRDLEALIQRARDYRKEYEDSFVSVEHLVLGFSQDQRLGKQLFREFQVSQQALKSAIESIRGRQSVIDQDPEG KYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRR LISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL DEYRKYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE AAAKLKMEITSKPTALDEINRAVLKMEMERLSLMNDTDKASKDRLSRLEAELSLLKEKQVELTEQWEHEKSVMTRIQSIK EEIDRVNLEIQQAEREYDLNHAAELKYGSLNSLQRQLETAEKELDEYMNSGESMLREEVTGSDIAEIVSKWTGIPVSKLQ QSEREKLLYLEEVLHRRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKTLASYMFNTEEALVRI DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTETVRRRPYSVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNT VIIMTSNVGSQYILNTDDDSVPKESTYETIKNRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQKRIA DRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILIDTELTAFGKGQLPQQKLVFRK LEAESEPTTRDSLEPSPSTN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 4 886 883 0.0
PANTHER 4 886 883 0.0
Gene3D 6 152 147 5.9E-34
ProSiteProfiles 6 150 145 48.874
SUPERFAMILY 9 160 152 3.34E-37
TIGRFAM 10 862 853 0.0
Pfam 23 72 50 4.8E-15
Pfam 98 149 52 7.1E-11
Gene3D 153 346 194 1.6E-75
SUPERFAMILY 163 553 391 2.65E-99
CDD 185 340 156 1.40896E-22
SMART 202 346 145 2.0E-9
Pfam 207 339 133 3.2E-13
ProSitePatterns 298 310 13 -
Pfam 346 448 103 1.4E-33
Gene3D 347 552 206 9.8E-71
Coils 438 465 28 -
Coils 476 496 21 -
Coils 503 537 35 -
SUPERFAMILY 554 860 307 4.4E-82
Gene3D 557 777 221 1.3E-86
CDD 579 727 149 1.11114E-18
Pfam 604 772 169 3.2E-56
SMART 605 780 176 1.6E-8
PRINTS 609 627 19 2.5E-40
ProSitePatterns 639 657 19 -
PRINTS 654 672 19 2.5E-40
PRINTS 683 701 19 2.5E-40
PRINTS 716 730 15 2.5E-40
Pfam 779 858 80 1.3E-25
SMART 779 865 87 1.1E-33
Gene3D 779 875 97 1.9E-27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Biological process Response to heat Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
Biological process Protein metabolic process The chemical reactions and pathways involving a protein. Includes protein modification.
Biological process Protein refolding The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0509100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…