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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0786100 |
| Transcript ID | LotjaGi1g1v0786100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135853494..135857299) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTGTTTCTACTCTGTTTCTCTCTGTTTCTGGAATAGACGTTGAATATGCACACTGCAACTGCGATGACGATGAAGG GTTTTGGAGCATACAGAGCCTCCTTGTTTCCCAAAAAGTCAGCGATTTTTTCATCGCCATTGCATATTTCTCAATACCAC TTGAGCTGCTTTACTTTGTTAGCTACTCTAATGTTCCATTCAAATTGGTTTTTCTTCAGTTTGTTGCCTTTATAGTACTT TGCGGTTTGACCCATTTGCTCAATGCCTATACCTATTATGGCCCTCATTCCTTTCAGATGTTTCTCTCACTCACAGTTGC TAAATTCTTCACTGCTCTTGTTTCTTGTGCTACTGCAATCACCTTTCCTACCCTGATTCCCCTGCTTCTGAAGATCAAGA TTAGGGAATTGTTTTTGAGGCAGAATGTGTTGGAATTGGGACAAGAGGTTGGGATGATGAAGAAGCAAAAGGAAGCTAGC TGGCATGTTAGGATGCTCACTCGCGAGATTAGGAAGTCTTTGGATAAACATACTATATTGTACACTACTTTGGTTGAGCT TTCTAAGGCATTGGAGTTGCACAATTGTGCAGTTTGGATGCCTGATGAGGACAGGCGAGTGATGCATTTGACTCATGAGC TGAAACCGAGCTCGGCTAAGAATTTTCTTGATTCTATCCCTGTGAATGATTTGGATGTGTTGGAGATTAGAAAGAGCAAA GGGGTGCGGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCAAGTAATGGTGGGTCTGGGGACTCTGGTAATGGTGGAGC TGTGGCGGCCATTCGGATGCCGATACTTCATGTTTCGAATTTCAAAGGAGGGACGCCGGAGTTCATTGAGACATCTTATG CTATTCTGGTTTTGGTTCTTCCAGATTCAAACTCCAGGGCTTGGACCCCCCATGAGATGGAGTTGGTGGAAGTGGTGGCT GACCAAGTGGCTGTAGCACTATCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGTCAGAAACTCGCGGAGCAGAA CCGTGCTTTGCAACAGGCTCAGAAGAATGCAATGATGGCTAGCTTGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATG GAATGAGGAGACCTATGCATTCAATTCTGGGATTGCTTTCAATGTTTCAGGAGGATAATATAAGACCTGAGCAGAAGATT ATCATTGACACAATGTTGAAAGTTAGCAATTCTCTGTCGCGTTTGATTAATGATGTGATGGAGATTTCAGCAAATGACAA AGGAAGCTTTCGGTTAGAGATGAAGCCTTTCCATCTGCATTACATGTTGAGGGAAGCCTCTTGCATTGCCAAGTGTTTGT GTGTGTATAAAGGCTTTGGCCTTGAAATTGATGTTCAGAGGTCTTTGCCTGATCTTGTAATAGGTGATGAGGCAAGGTCT TTTCAAGTAATTTTGCATATGGTTGGATATTTATTAAACTTGTATGACAGAGGGACTCTCATTTTTCAAGTTTTTCTGGA GAGTGATAATGGGGATAAGGATGATAGAAGTCTTGGAATATGGAGATCAAGCGTGCAAAATGATTACGCGTATGTAAAAT TTAATTTACAGATAACTGGTAATAGTTCCCATACAGATGAATCAAGTTTAACAAGAAACCATGCTGGTAAGAGGCTCAGC AACATTGAATCTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAACACTAGTGCAGGTTGGTGCATCATTCTTTGTCTTGTT TTTCAAATTTATTTATCAATTTCTCTTAATGGTTGAAGTTATAGACATTATTCCCATATTTAACTGTTTATTAATAAGCA CCCCTCCCCCCCTCTTTAGACGTTACACGCTGCTCCATTATTGTATAGAATGTTGATAGTTGGCTGTGGACCTAGGAATT ACATTTTATTCTTAGAGTGTGATTCTTGGTGACAAAATTACCGGTACCCTCAATTATTTGAATAGGTGAATATTCCAATG GGGATTTTTTTAATGTTGTTGGAAATGTGCGAGTGTGATGAAACTGTCAATAAAATTAGGCTGTGGTGGTGTAGTTGTCA TATCAGATTTAAGAAATAAATGGGAAAAGTGACTTCCAATCATGAAGCCTTTATTTTATCTTGCTGATCTAGTTTCCTGC AGGATGTTGTTGGGATAAATATGCATTGTAGTATGGTTTCTTGTATACTGCAACTTGCTGACTATAGATTCCTAGTTTAT ATCTAGTGGTCAAAGATTCACCTGATAATTGTCTTGTTAATTTTTTTTTCACCGTCTTGTCATTAGGAAGCTATATATAT TGTTTCTCGGCTAGTTTGTCGTACAGGTAGATAAATTGCATCCATTGCAAAGCAATGGAGACTCGTAAGGTGGTGAATGT CAGTGGTCTTCTAAATGCTCAAAGGAGACATCAAATTGGAATATGGTTTGATGTTTAATGTTTTTTTTAATTAAAATATT TTATAAAAAATTTCAGAGTATGAAGTAACTGTAATTGTCATCAAGTTAGAACCATAATTCGGACTATGCCTGTAGGCAAG AATTCAAATGTTCATTAGACACACATTGGTGAAAGAATTTCTTCTAGTTATTCATGGAGATAGTCAAAGTACAGCTGAAC TGTTAGTCCAAAATTACTGATGACTAATACTTGACGTGACACTTAACTTTGCACAGATATCTCTGACTGTCTTACAAGTT TCAGCTAATGGGACAAGGGTTTTTCTGTGATAACCCGTAGTTTAATGCCTTTTTCCAGTAAAAAGAAAAGATGCTCTCTT TTCTTATTTATGTCATGTTACACTTCCCTACATAATAGAAGGTCCTTTCATGTTCATCCCAAGTCTATGATGTATAATAC TCTTTTGGGAGCCTTTTCCTGTGTAGTCGGAAATATGGATTATCATATGCATCACTTCAGGTAGGTAATAAATGAATATT GAAAATTTGAAGTAGCAGAAAGGACTGGATAAGAATCAATGTTGTCTTCTTCTTTCACTTGTAAGATCAGTTAGTTTTAA AATTTGAACATGAAAGAGACTCGAATTTGCCCCCTTTCATCAGTTGGATTAGGAGAACAATAAGCTGGTTCATGCTTTTA GTTCTGTATACCCTGAATATTGTTGCCTAAAACTAAAATTTGTTCTACCTTTGCCTATTTGCTGACCATGGGTTGCACAA GCATAATCCTACTGAAATGAGTTCAGCAATGTATAATAGTTTTGTAGTTCTGACTATACAATATGGAATAATATGCAGAT GATGCAAGGTAATATCTTGGTTTCACCAAACTCTCACGGTTTAGCACAAGGGATGACACTTCTTCTCAGGTTTCAGATAG GATCAGCACATGGAAGATTCATTCTTCCTCCTAAAGATTTTTCAAACACACAGTTTAGAGGGCTTAAGGTCGTGTTAGCC GATGATGACAACGTAAACAGGACTGTGACTAAGAAGCTGCTTGAGAAACTGGGTTGTCAAGTAACTGCTGTTTCATCAGG TCTTGAATGTCTTGCTGCTATAAGTGCTGCCGGTAACTCATTCAAGATCATCCTGTTGGATCTTCACATGCCTGAAATGG ATGGTTTTGAAGTTGCAAGAAGGATACGGAAGTTTCAGAGCAGAAACTGGCCCTTGATCATTGCTCTTACAGCAAGTGCA GAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGAAAGCCTATTCTCCTGCATGAGATAGC AGATGAACTTAGAACGGTTCTGCTACGTGCAGGTGAAAAGTTGTGA
CDS sequence (LotjaGi1g1v0786100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCTCACTCACAGTTGCTAAATTCTTCACTGCTCTTGTTTCTTGTGCTACTGCAATCACCTTTCCTACCCTGAT TCCCCTGCTTCTGAAGATCAAGATTAGGGAATTGTTTTTGAGGCAGAATGTGTTGGAATTGGGACAAGAGGTTGGGATGA TGAAGAAGCAAAAGGAAGCTAGCTGGCATGTTAGGATGCTCACTCGCGAGATTAGGAAGTCTTTGGATAAACATACTATA TTGTACACTACTTTGGTTGAGCTTTCTAAGGCATTGGAGTTGCACAATTGTGCAGTTTGGATGCCTGATGAGGACAGGCG AGTGATGCATTTGACTCATGAGCTGAAACCGAGCTCGGCTAAGAATTTTCTTGATTCTATCCCTGTGAATGATTTGGATG TGTTGGAGATTAGAAAGAGCAAAGGGGTGCGGATTTTGAGGCCTGATTCTGCATTGGGAGCTGCAAGTAATGGTGGGTCT GGGGACTCTGGTAATGGTGGAGCTGTGGCGGCCATTCGGATGCCGATACTTCATGTTTCGAATTTCAAAGGAGGGACGCC GGAGTTCATTGAGACATCTTATGCTATTCTGGTTTTGGTTCTTCCAGATTCAAACTCCAGGGCTTGGACCCCCCATGAGA TGGAGTTGGTGGAAGTGGTGGCTGACCAAGTGGCTGTAGCACTATCTCATGCATCTGTTCTTGAAGAGTCTCAGCTAATG AGTCAGAAACTCGCGGAGCAGAACCGTGCTTTGCAACAGGCTCAGAAGAATGCAATGATGGCTAGCTTGGCAAGGAGCTC ATTTGAGAAAGTGATGAGCCATGGAATGAGGAGACCTATGCATTCAATTCTGGGATTGCTTTCAATGTTTCAGGAGGATA ATATAAGACCTGAGCAGAAGATTATCATTGACACAATGTTGAAAGTTAGCAATTCTCTGTCGCGTTTGATTAATGATGTG ATGGAGATTTCAGCAAATGACAAAGGAAGCTTTCGGTTAGAGATGAAGCCTTTCCATCTGCATTACATGTTGAGGGAAGC CTCTTGCATTGCCAAGTGTTTGTGTGTGTATAAAGGCTTTGGCCTTGAAATTGATGTTCAGAGGTCTTTGCCTGATCTTG TAATAGGTGATGAGGCAAGGTCTTTTCAAGTAATTTTGCATATGGTTGGATATTTATTAAACTTGTATGACAGAGGGACT CTCATTTTTCAAGTTTTTCTGGAGAGTGATAATGGGGATAAGGATGATAGAAGTCTTGGAATATGGAGATCAAGCGTGCA AAATGATTACGCGTATGTAAAATTTAATTTACAGATAACTGGTAATAGTTCCCATACAGATGAATCAAGTTTAACAAGAA ACCATGCTGGTAAGAGGCTCAGCAACATTGAATCTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAACACTAGTGCAGATG ATGCAAGGTAATATCTTGGTTTCACCAAACTCTCACGGTTTAGCACAAGGGATGACACTTCTTCTCAGGTTTCAGATAGG ATCAGCACATGGAAGATTCATTCTTCCTCCTAAAGATTTTTCAAACACACAGTTTAGAGGGCTTAAGGTCGTGTTAGCCG ATGATGACAACGTAAACAGGACTGTGACTAAGAAGCTGCTTGAGAAACTGGGTTGTCAAGTAACTGCTGTTTCATCAGGT CTTGAATGTCTTGCTGCTATAAGTGCTGCCGGTAACTCATTCAAGATCATCCTGTTGGATCTTCACATGCCTGAAATGGA TGGTTTTGAAGTTGCAAGAAGGATACGGAAGTTTCAGAGCAGAAACTGGCCCTTGATCATTGCTCTTACAGCAAGTGCAG AAGAACACATAAAGGAAAGATGCCTTCAGGTGGGAATGAATGGATTGATTCGAAAGCCTATTCTCCTGCATGAGATAGCA GATGAACTTAGAACGGTTCTGCTACGTGCAGGTGAAAAGTTGTGA
Protein sequence (LotjaGi1g1v0786100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLSLTVAKFFTALVSCATAITFPTLIPLLLKIKIRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTI LYTTLVELSKALELHNCAVWMPDEDRRVMHLTHELKPSSAKNFLDSIPVNDLDVLEIRKSKGVRILRPDSALGAASNGGS GDSGNGGAVAAIRMPILHVSNFKGGTPEFIETSYAILVLVLPDSNSRAWTPHEMELVEVVADQVAVALSHASVLEESQLM SQKLAEQNRALQQAQKNAMMASLARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIIIDTMLKVSNSLSRLINDV MEISANDKGSFRLEMKPFHLHYMLREASCIAKCLCVYKGFGLEIDVQRSLPDLVIGDEARSFQVILHMVGYLLNLYDRGT LIFQVFLESDNGDKDDRSLGIWRSSVQNDYAYVKFNLQITGNSSHTDESSLTRNHAGKRLSNIESKEGLSFSMCKTLVQM MQGNILVSPNSHGLAQGMTLLLRFQIGSAHGRFILPPKDFSNTQFRGLKVVLADDDNVNRTVTKKLLEKLGCQVTAVSSG LECLAAISAAGNSFKIILLDLHMPEMDGFEVARRIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHEIA DELRTVLLRAGEKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 649 | 649 | 0.0 | – | |
| PANTHER | 1 | 649 | 649 | 0.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 3 | 15 | 13 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 654 | 634 | - | – | |
| Gene3D | 63 | 231 | 169 | 3.7E-9 | ||
| SMART | 76 | 238 | 163 | 8.8E-8 | ||
| Pfam | 78 | 228 | 151 | 1.6E-12 | ||
| SUPERFAMILY | 79 | 231 | 153 | 3.21E-13 | – | |
| Gene3D | 232 | 327 | 96 | 6.4E-17 | – | |
| Coils | 234 | 257 | 24 | - | – | |
| SUPERFAMILY | 249 | 329 | 81 | 5.3E-9 | ||
| SMART | 264 | 329 | 66 | 8.5E-8 | ||
| CDD | 264 | 324 | 61 | 1.07902E-7 | ||
| Pfam | 266 | 328 | 63 | 4.1E-7 | ||
| ProSiteProfiles | 271 | 508 | 238 | 17.329 | ||
| Gene3D | 328 | 508 | 181 | 8.7E-9 | ||
| CDD | 370 | 502 | 133 | 2.20658E-44 | – | |
| Gene3D | 518 | 647 | 130 | 1.7E-36 | – | |
| SUPERFAMILY | 524 | 647 | 124 | 1.18E-33 | ||
| SMART | 528 | 643 | 116 | 5.4E-30 | ||
| ProSiteProfiles | 529 | 647 | 119 | 39.589 | ||
| Pfam | 530 | 642 | 113 | 3.1E-22 | ||
| CDD | 532 | 647 | 116 | 1.37114E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0786100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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