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LotjaGi3g1v0043800.5

Overview

Field Value
Gene ID LotjaGi3g1v0043800
Transcript ID LotjaGi3g1v0043800.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0B2RYF3|A0A0B2RYF3_GLYSO BAH and coiled-coil domain-containing protein 1; Found in the gene: LotjaGi3g1v0043800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:4683872..4685904) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGGTAGTAA CTTGCAACAACAACGCTGAATACAACAAATAGTGAATACCCTTTTCTCCAAATGGCGATTTTCGCGTGAAAAATGGTTCC TTTCCGTGTTTTATGAAATGGGGTTGTTGAATTTTGTTGGTGTTTTTTTTCAGCTGGTGACTGTGTTCTGATGCGGCCTT CGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGAGCAACGTGAGGGTGCGGGTG AGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAGGAGCTTTTTCTGTCTGACCA TTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAACTATACTAAGCTTGAGCATG TTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTCCTGATCGCGTTGCTGTGTGA GTTTCGGTTTCCCTTTGGTTTTTGTTATAAAGTTTGTGGTTTTTTATGATGGGAATTGTGTTTTTGAGTTATGTAACTGA TGGGGTTTTTTGTTTTTTTGTGTGTTTTGAAGGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACA ATGTGAAGGGTGCAAGGATTGGTATAAATCTGTGTATTCTGCTTTTTTGCTTTGTCTATTAATTTTCTAATTGGATTCGA TTTCTAGATGTTTGCTTTAATAGCAGTCAATAGCACGCTATAGCGGTGTAGCGGAGCGGCTCCCTGCCGCTATTGAGATG AAATAGCGGCACATTTCGCAATAGCGGCAGATCGCGGCCAGTAGCGGGAAATAGCGGCGCTATATGGACGAAGGAAAAAA TGACTCAACCCCTCGGTTTAAAATTGTTGGGGAACCTGTTTAGGGGTATTTTAGGACTTCTTAGGGAACCTGTTTAGGGT GCTAACTGCTAAGAGTTAAAAGACCAATGTTGGCCCTAATGTGATAACGAGGATGTTTAACGGCATGGTTGAATTTTAGT AAGAGAAAACAAAAGTCTCCGATTATTGAAACTGACATAATACTTCATTAAATGCACATTTTACAATTTACTCCCGTGCC AACATTTATTCTAACACTCCATAAGATGACAAGAAGTATTTAAGAAGCTGGGGGAAGTTTCCAATATTTTTATTACTCTT AAAGTTTCAGTTATTGTAACTCTATCTTGGCATATGCATACCTTTTGCGTGGTTGTCTTGAGTAAGTATTTGAGTTGTGA GAAAAAAAGAGAAAAGAAAGGTTGACTAAATATTTAAAAGATTGTCCATTACATGCCAAAACTTCAAGGGCAGATGAATT TTGTCTGAGCTTGTACCTTCTGATGTGTGTTTATGTGGTTTTTTTAGCCCCATATCACTTCTTTGGGCTCTGCTGTTTCT TTTCTCTAATATATATGTCTGCCAATATAAATTGAATGATGCAGAGGCTTATGTCTTCTTTTGATTGGCTTGATATAGTG AAAGTTATGCTGAGACACTTTTTTAGTATCCATGTAAGATTTGGGATGAGAATTTTGCTACATTCCTGGAATAAACCCTG ACTTATTGGAATCACTTTTCTATTCATCGTGAAAGAGTGTTAAGTCTAAAGAATGACCAAGAATTATACTACTGTGGGTT TTTATATCTGTGTATTTTCCTAAATGTTTTATGAAACGCAAATTTCAATCTTTGTAGGTTTCTTGTAGGTACCATCCTGC CTGTGTGGGCATGACTATCGAAGAAGCAAAGAAACTGGAGCATTTTATGTGTTCTGAATGTTCGTCAGATGATGATGTGA AGAAACCCCATGCTACATTTTCTGCATCACCAGGTTCTGATATCAAGGTGACTTTCTCCATCCAGTATCAAATTATTGCA CCTTTACCTTGTTCTTATTACTTATTTTCCTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0043800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGCTGGTGA CTGTGTTCTGATGCGGCCTTCGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGA GCAACGTGAGGGTGCGGGTGAGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAG GAGCTTTTTCTGTCTGACCATTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAA CTATACTAAGCTTGAGCATGTTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTC CTGATCGCGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAG GATTGGTACCATCCTGCCTGTGTGGGCATGACTATCGAAGAAGCAAAGAAACTGGAGCATTTTATGTGTTCTGAATGTTC GTCAGATGATGATGTGAAGAAACCCCATGCTACATTTTCTGCATCACCAGGTTCTGATATCAAGGTGACTTTCTCCATCC AGTATCAAATTATTGCACCTTTACCTTGTTCTTATTACTTATTTTCCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0043800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGVK ELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK DWYHPACVGMTIEEAKKLEHFMCSECSSDDDVKKPHATFSASPGSDIKVTFSIQYQIIAPLPCSYYLFS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46364:SF11
1 210 210 2.6E-128 –
Gene3D
G3DSA:2.30.30.490
1 126 126 6.0E-28
IPR043151
PANTHER
PTHR46364
1 210 210 2.6E-128 –
SMART
SM00439
21 136 116 7.8E-40
IPR001025
ProSiteProfiles
PS51038
21 136 116 23.667
IPR001025
CDD
cd04714
22 156 135 6.72072E-55 –
Pfam
PF01426
23 135 113 4.8E-22
IPR001025
Gene3D
G3DSA:3.30.40.10
127 202 76 4.5E-21
IPR013083
SUPERFAMILY
SSF57903
132 190 59 5.09E-19
IPR011011
ProSiteProfiles
PS50016
138 189 52 9.196
IPR019787
Pfam
PF00628
140 188 49 2.5E-10
IPR019787
SMART
SM00249
140 187 48 3.0E-10
IPR001965
ProSitePatterns
PS01359
141 186 46 -
IPR019786

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0043800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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