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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0293400 |
| Transcript ID | LotjaGi5g1v0293400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61089537..61092420) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGTTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATAC TGCAGCTGTAGTAGAAGTTATTGTGACACAATCCAGTGCAAGTGTATCGTCAGGTAAATTATTTACTTGGGGTGATGGGG ATAAGAGTCGTCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGTGTACCTTCACTAATTGATCACAATTTT TATAGAATTGCTTGCGGGCACAGTTTGACGGCAGGCCTGACCACGCCTGGACAAGTTTTTACAATGGGAAGCACTGTTTA TGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTACCTTGTTTGGTTCAAGACAAGCTTGCTGGAGAACCCGTTGAAG AAATTGCATGCGGGGCTTATCATGTAGTTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGAAAGGGTGCAAATGGG AGATTAGGTCATGGAGACGTTGAAGATAGAAAAGCACCCACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATAT TGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTTTCTGGTGCTGAGCAGTCTCAGTGCGCTGCTT GTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCA AGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATACCGTGTTTGCGATTCTTGTCATGCGAAGTTGAA CAAGGTTATAGATTCTGGCAATAATAATAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAAA AGTCTGATCTGAGATTGACTAAATCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAA CAGGGGAAGAAGGCCGATACATTCTCTCTGGTTCGTGCCTCTCAAGCACCGTCTTTGCTACAGCTCAAAGATGTTGTCTT GTCTACTGCTGTTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACCATCTGGAGCAAGTTCCAGGTCTGTCGTGA GTTCCAGGTCTGTCTCCCCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTT TCCTTCTCAAAAAATATTTCTGATAGTCTGAAGAAGACAAATGAACTATTGAATCAAGAAGTGCTAAAGTTACGCGCTCA GGTATGTTATGCTTCCTTCATTTGTCTTATTGGTTTGAGTTTGGCGAATAAACAATGTAAAACATGAGCAGTATCATGCC AGAAATGTTAATTTCTTGTCTTCGTGCTTATAATGTGATGTGCACTTATTACGGTATCAAGAGAGATCTAAGTTCTAATG TAAATCTTGTTAGGTTGAGACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTC AGGAAGCTATGTCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAG GTTAAATTTTTTGTTAATTTTACTGCTTCCTGAAGTGTGATGTTTATTTTCATGTGACACTTTTTCATTTATGGCTTTAT TGTGCTGGATCTTATTTTATTTTTTGTAGTTTTCATTCGAAGAAAATGAAAACCTAAATTAAACCATCTATCAAATTGGA ACCTCTAATTGTAACAAAATACCAAGAGTTGGTTTTTGAGCAATGACTTTCGCTTTCACATATTATATTAACACCTACAC TCCACGCTGAATACTGTTTTCCGTTTTTTTAAGAAAAAAATTCCCTACAGTTCCATTCCTTTTCCCTTTCATTGTATTTT TGTTCTATACTTGTGCTTATTGGTCTGTCACATTGTTTCAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGTATTTAT GATGCTGAAAACATCAGACCTGCTTACGTGCCGAATGGTCTGGAGCCAAACGGCATCCACCATCCAGACTTAAATGGGGA GCACCACACCAGAGCAGAGTCAATCAGTGGCTCTAGTTTAGCTTCTGTAGGACTTGAATACTCTCTGATGAGTAGAATCG AGGGGACTTTGCCTGGAAGCTATGGTCTTTACCAGCAAAACCGCGGGCCTGTGACCACCAACAGAACAGAAGATTACCCG GACGTCAAATTGCCTAATGGCAGTAGTGTGATTCAGGCAAGCAACAGTAGTGTGTCAGATACTGTTGATGGTAGGGATTC TGGGAATTTCCAAGATGACGAGAGTGGTTCAAGATCAAGGAATGCTGTATCGCCTGCTGCTAGTAATCATGTTGAGGCAG AATGGATTGAACAGTATGAGCCCGGCGTCTATATAACACTGGTTGCCCTGCGTGATGGAACTCGAGATCTAAAGCGAGTG CGCTTCAGGTAATAGAAGAATTCTCCACAGTTCCAGGTTATGTTTATCTGGTTCAACTGGTATTTGTGGCTGCCAAATAA ATTATTGGTTAATTGCCTTGTAAATAATTTTATTTCTTTCACTAACTCTGCATGTGGGTTGATTTTTTACTCCTGAAACC CTATCCATGTTTTAACTAAGATATTGCTTAAATTATATTGCAATCATCATCTTGCATGTGTAACATGTTTGATAATTAAT GTGTATGCAGCCGGAGAAGATTTGGCGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGAAAAGGTATACGAAAAG TACAATGTTCGAAGCACAGACAAGTCTACGGGCCAAGCATCACGCAGGGGAGAGGGTGCTGGTTCACCTGTTCTATAATC TTAG
CDS sequence (LotjaGi5g1v0293400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTACCTTGTTTGGTTCAAGACAAGCTTGC TGGAGAACCCGTTGAAGAAATTGCATGCGGGGCTTATCATGTAGTTGTTTTAACATCCAAAAATGAAGTTTATACTTGGG GAAAGGGTGCAAATGGGAGATTAGGTCATGGAGACGTTGAAGATAGAAAAGCACCCACTTTGGTTGAAGCCTTGAAAGAT AGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTTTCTGGTGCTGAGCA GTCTCAGTGCGCTGCTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACT GCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATACCGTGTTTGCGATTCT TGTCATGCGAAGTTGAACAAGGTTATAGATTCTGGCAATAATAATAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAA CAAGGACAGATTAGAAAAGTCTGATCTGAGATTGACTAAATCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAG ATAGTAAGGCAGCCAAACAGGGGAAGAAGGCCGATACATTCTCTCTGGTTCGTGCCTCTCAAGCACCGTCTTTGCTACAG CTCAAAGATGTTGTCTTGTCTACTGCTGTTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACCATCTGGAGCAAG TTCCAGGTCTGTCGTGAGTTCCAGGTCTGTCTCCCCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTACACCTATTC CAACAACATCAGGACTTTCCTTCTCAAAAAATATTTCTGATAGTCTGAAGAAGACAAATGAACTATTGAATCAAGAAGTG CTAAAGTTACGCGCTCAGGTTGAGACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAA GACTCAGGAAGCTATGTCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAG CACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGTATTTATGATGCTGAAAACATCAGACCTGCTTACGTGCCGAAT GGTCTGGAGCCAAACGGCATCCACCATCCAGACTTAAATGGGGAGCACCACACCAGAGCAGAGTCAATCAGTGGCTCTAG TTTAGCTTCTGTAGGACTTGAATACTCTCTGATGAGTAGAATCGAGGGGACTTTGCCTGGAAGCTATGGTCTTTACCAGC AAAACCGCGGGCCTGTGACCACCAACAGAACAGAAGATTACCCGGACGTCAAATTGCCTAATGGCAGTAGTGTGATTCAG GCAAGCAACAGTAGTGTGTCAGATACTGTTGATGGTAGGGATTCTGGGAATTTCCAAGATGACGAGAGTGGTTCAAGATC AAGGAATGCTGTATCGCCTGCTGCTAGTAATCATGTTGAGGCAGAATGGATTGAACAGTATGAGCCCGGCGTCTATATAA CACTGGTTGCCCTGCGTGATGGAACTCGAGATCTAAAGCGAGTGCGCTTCAGCCGGAGAAGATTTGGCGAGCACCAAGCA GAGACTTGGTGGTCAGAGAACCGCGAAAAGGTATACGAAAAGTACAATGTTCGAAGCACAGACAAGTCTACGGGCCAAGC ATCACGCAGGGGAGAGGGTGCTGGTTCACCTGTTCTATAA
Protein sequence (LotjaGi5g1v0293400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSTVYGQLGNPQSDGKLPCLVQDKLAGEPVEEIACGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKD RHVKYIACGSNYSAAICLHKWVSGAEQSQCAACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDS CHAKLNKVIDSGNNNRRNAMPRLSGENKDRLEKSDLRLTKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQ LKDVVLSTAVDLKRTVPRPVLTPSGASSRSVVSSRSVSPFSRRSSPPRSATPIPTTSGLSFSKNISDSLKKTNELLNQEV LKLRAQVETLRQRCELQELEVQRSAKKTQEAMSLAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGIYDAENIRPAYVPN GLEPNGIHHPDLNGEHHTRAESISGSSLASVGLEYSLMSRIEGTLPGSYGLYQQNRGPVTTNRTEDYPDVKLPNGSSVIQ ASNSSVSDTVDGRDSGNFQDDESGSRSRNAVSPAASNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQA ETWWSENREKVYEKYNVRSTDKSTGQASRRGEGAGSPVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 583 | 583 | 5.9E-292 | – | |
| ProSiteProfiles | 1 | 47 | 47 | 10.946 | ||
| Gene3D | 1 | 105 | 105 | 3.0E-25 | ||
| PANTHER | 1 | 583 | 583 | 5.9E-292 | – | |
| SUPERFAMILY | 2 | 98 | 97 | 2.22E-23 | ||
| ProSiteProfiles | 48 | 99 | 52 | 15.006 | ||
| Pfam | 49 | 96 | 48 | 6.9E-14 | ||
| SMART | 98 | 167 | 70 | 4.2E-19 | ||
| Pfam | 100 | 166 | 67 | 2.0E-13 | ||
| SUPERFAMILY | 100 | 174 | 75 | 1.73E-18 | ||
| ProSiteProfiles | 104 | 166 | 63 | 11.557 | ||
| Gene3D | 106 | 177 | 72 | 2.3E-16 | ||
| CDD | 109 | 162 | 54 | 3.26436E-16 | – | |
| MobiDBLite | 171 | 191 | 21 | - | – | |
| MobiDBLite | 258 | 302 | 45 | - | – | |
| MobiDBLite | 261 | 302 | 42 | - | – | |
| Coils | 306 | 347 | 42 | - | – | |
| Pfam | 357 | 392 | 36 | 7.8E-19 | ||
| Coils | 362 | 382 | 21 | - | – | |
| MobiDBLite | 405 | 424 | 20 | - | – | |
| MobiDBLite | 447 | 515 | 69 | - | – | |
| MobiDBLite | 448 | 462 | 15 | - | – | |
| MobiDBLite | 475 | 493 | 19 | - | – | |
| Pfam | 520 | 575 | 56 | 8.5E-30 | ||
| ProSiteProfiles | 521 | 576 | 56 | 36.491 | ||
| MobiDBLite | 577 | 599 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0293400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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