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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 10 of 73 with 50 rows per page. This search has taken 8.266s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0356899.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Cicer arietinum] gi|502084183|ref|XP_004487641.1| chr0 187938143 187941462 -
2 domain predictions
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Lj0g3v0357589.1
n.a. PREDICTED: glycogen synthase kinase-3 homolog MsK-1-like isoform X4 [Cicer arietinum] gi|502116888|ref|XP_004495628.1| chr0 188293090 188295847 +
2 domain predictions
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Lj0g3v0358399.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357453577|ref|XP_003597066.1| chr0 188648804 188654509 -
2 domain predictions
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Lj0g3v0358569.1
n.a. PREDICTED: mitogen-activated protein kinase 19-like [Cicer arietinum] gi|502087941|ref|XP_004488688.1| chr0 188757595 188760493 +
2 domain predictions
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Lj0g3v0359489.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62857016|dbj|BAD95893.1| chr0 189254577 189257740 -
2 domain predictions
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Lj0g3v0359679.1
n.a. PREDICTED: serine/threonine-protein kinase BRI1-like 1-like [Cicer arietinum] gi|502127369|ref|XP_004499678.1| chr0 189379633 189384247 +
2 domain predictions
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Lj0g3v0360899.1
n.a. PREDICTED: protein kinase APK1A, chloroplastic-like isoform 1 [Glycine max] gi|356501055|ref|XP_003519344.1| chr0 190088399 190092124 +
2 domain predictions
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Lj0g3v0361919.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like isoform X1 [Cicer arietinum] gi|502080122|ref|XP_004486464.1| chr0 190714722 190719641 +
2 domain predictions
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Lj0g3v0361919.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like isoform X1 [Cicer arietinum] gi|502080122|ref|XP_004486464.1| chr0 190714835 190719641 +
2 domain predictions
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Lj0g3v0364369.1
n.a. protein kinase-related protein precursor [Glycine max] gi|351725755|ref|NP_001235056.1| chr0 192264519 192268730 -
2 domain predictions
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Lj1g3v0015510.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356507449|ref|XP_003522479.1| chr1 181389 183322 -
2 domain predictions
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Lj1g3v0052210.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
 –
Lj1g3v0052210.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
2 domain predictions
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Lj1g3v0052210.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 365938 407245 -
2 domain predictions
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Lj1g3v0052330.1
n.a. cysteine-rich protein precursor [Glycine max] gi|351721533|ref|NP_001238492.1| chr1 448340 451345 -
2 domain predictions
 –
Lj1g3v0052350.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357480737|ref|XP_003610654.1| chr1 454027 457186 -
2 domain predictions
 –
Lj1g3v0052360.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357480739|ref|XP_003610655.1| chr1 459111 462277 -
2 domain predictions
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Lj1g3v0112890.1
n.a. PREDICTED: probable inactive serine/threonine-protein kinase lvsG-like [Cicer arietinum] gi|502119578|ref|XP_004496667.1| chr1 1161393 1174978 +
2 domain predictions
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Lj1g3v0112960.1
n.a. Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao] gi|508713910|gb|EOY05807.1| chr1 1212000 1218600 +
2 domain predictions
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Lj1g3v0114180.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Cicer arietinum] gi|502159045|ref|XP_004511375.1| chr1 1302128 1306278 +
2 domain predictions
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Lj1g3v0131260.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase kinase 3-like isoform X1 [Cicer arietinum] gi|502088124|ref|XP_004488741.1| chr1 1766823 1774059 -
2 domain predictions
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Lj1g3v0173660.1
n.a. PREDICTED: CBL-interacting serine/threonine-protein kinase 8-like [Glycine max] gi|356500781|ref|XP_003519209.1| chr1 1943443 1949004 +
2 domain predictions
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Lj1g3v0177810.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410-like, partial [Vitis vinifera] gi|359497026|ref|XP_003635401.1| chr1 2016830 2021310 +
2 domain predictions
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Lj1g3v0244740.1
n.a. PREDICTED: serine/threonine-protein kinase PEPKR2-like [Glycine max] gi|356498821|ref|XP_003518247.1| chr1 2467352 2469351 -
2 domain predictions
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Lj1g3v0251240.1
n.a. Serine-threonine protein kinase [Medicago truncatula] gi|357489739|ref|XP_003615157.1| chr1 2728288 2731871 +
2 domain predictions
 –
Lj1g3v0268780.1
n.a. protein kinase family protein [Glycine max] gi|351727927|ref|NP_001238713.1| chr1 3052098 3056106 -
2 domain predictions
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Lj1g3v0270510.1
n.a. PREDICTED: cyclin-dependent kinase D-1-like [Glycine max] gi|356513008|ref|XP_003525206.1| chr1 3305611 3307428 -
2 domain predictions
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Lj1g3v0270520.1
n.a. n.a. chr1 3305611 3307428 -
2 domain predictions
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Lj1g3v0296890.1
n.a. ZIK1 protein [Medicago sativa] gi|28874836|emb|CAC84087.1| chr1 3524911 3528935 +
2 domain predictions
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Lj1g3v0318450.1
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502124307|ref|XP_004498472.1| chr1 3799661 3812312 -
2 domain predictions
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Lj1g3v0318450.2
n.a. PREDICTED: casein kinase I isoform delta-like [Cicer arietinum] gi|502124307|ref|XP_004498472.1| chr1 3799661 3812312 -
2 domain predictions
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Lj1g3v0395850.1
n.a. Serine/threonine-protein kinase/endoribonuclease ire-1 [Triticum urartu] gi|474390985|gb|EMS65329.1| chr1 4499654 4500778 +
2 domain predictions
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Lj1g3v0410200.1
n.a. Fibroblast growth factor receptor [Medicago truncatula] gi|357461999|ref|XP_003601281.1| chr1 4711893 4716725 -
2 domain predictions
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Lj1g3v0415090.1
n.a. PREDICTED: probable inactive receptor kinase At2g26730-like [Glycine max] gi|356518991|ref|XP_003528158.1| chr1 5130270 5133165 -
2 domain predictions
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Lj1g3v0438940.1
n.a. PREDICTED: serine/threonine-protein kinase rio2-like isoform 1 [Glycine max] gi|356569677|ref|XP_003553023.1| chr1 5960421 5971148 -
2 domain predictions
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Lj1g3v0438940.3
n.a. PREDICTED: serine/threonine-protein kinase rio2-like isoform 1 [Glycine max] gi|356569677|ref|XP_003553023.1| chr1 5960421 5966778 -
2 domain predictions
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Lj1g3v0450070.1
n.a. PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1| chr1 6037435 6042082 +
2 domain predictions
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Lj1g3v0526480.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360-like [Glycine max] gi|356519088|ref|XP_003528206.1| chr1 6611600 6615007 +
2 domain predictions
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Lj1g3v0536870.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Glycine max] gi|356516828|ref|XP_003527095.1| chr1 6695703 6700903 +
2 domain predictions
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Lj1g3v0672200.1
n.a. phosphoenolpyruvate carboxylase kinase [Lotus japonicus] gi|23503552|dbj|BAC20362.1| chr1 8655284 8655613 -
2 domain predictions
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Lj1g3v0694020.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like isoform X2 [Cicer arietinum] gi|502177298|ref|XP_004516050.1| chr1 8962713 8977545 -
2 domain predictions
 –
Lj1g3v0715600.1
n.a. PREDICTED: receptor-like protein kinase THESEUS 1-like [Cicer arietinum] gi|502153617|ref|XP_004509405.1| chr1 9407555 9417483 -
2 domain predictions
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Lj1g3v0809660.1
n.a. PREDICTED: protein NSP-INTERACTING KINASE 3-like isoform 1 [Glycine max] gi|356501661|ref|XP_003519642.1| chr1 10607004 10612204 +
2 domain predictions
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Lj1g3v0828070.3
n.a. Casein kinase I isoform delta-like protein [Medicago truncatula] gi|357439363|ref|XP_003589958.1| chr1 10759348 10764588 +
2 domain predictions
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Lj1g3v0874380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| chr1 11233272 11237661 +
2 domain predictions
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Lj1g3v0897610.1
n.a. PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max] gi|356515943|ref|XP_003526656.1| chr1 11338981 11343050 +
2 domain predictions
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Lj1g3v0912030.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK14-like [Cicer arietinum] gi|502136109|ref|XP_004502563.1| chr1 11564711 11566198 +
2 domain predictions
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Lj1g3v0934380.1
n.a. PREDICTED: probable inactive receptor kinase At4g23740-like [Glycine max] gi|356507598|ref|XP_003522551.1| chr1 11730957 11733726 +
2 domain predictions
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Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
2 domain predictions
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Lj1g3v1038370.1
n.a. PREDICTED: CDPK-related protein kinase-like [Glycine max] gi|356516120|ref|XP_003526744.1| chr1 13034029 13042307 -
2 domain predictions
 –