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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0874380 |
| Transcript ID | Lj1g3v0874380.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 25 | 24 | 1.30E-183 | – | |
| PANTHER | 2 | 25 | 24 | 1.30E-183 | – | |
| SUPERFAMILY | 2 | 57 | 56 | 1.34E-10 | – | |
| Gene3D | 4 | 60 | 57 | 3.30E-13 | ||
| CDD | 5 | 50 | 46 | 5.53E-06 | – | |
| Pfam | 6 | 48 | 43 | 3.20E-10 | ||
| ProSiteProfiles | 6 | 51 | 46 | 12.563 | ||
| SMART | 6 | 50 | 45 | 5.60E-08 | ||
| ProSitePatterns | 25 | 34 | 10 | – | ||
| PANTHER | 54 | 151 | 98 | 1.30E-183 | – | |
| PANTHER | 54 | 151 | 98 | 1.30E-183 | – | |
| SUPERFAMILY | 196 | 298 | 103 | 6.43E-11 | ||
| MobiDBLite | 304 | 332 | 29 | – | – | |
| Coils | 309 | 337 | 29 | – | – | |
| Gene3D | 316 | 329 | 14 | 2.00E-45 | ||
| SUPERFAMILY | 328 | 467 | 140 | 6.43E-11 | ||
| Gene3D | 344 | 465 | 122 | 9.50E-07 | – | |
| MobiDBLite | 504 | 527 | 24 | – | – | |
| Gene3D | 537 | 833 | 297 | 2.00E-45 | ||
| SMART | 538 | 575 | 38 | 0.0029 | ||
| SUPERFAMILY | 540 | 834 | 295 | 2.63E-45 | ||
| PANTHER | 541 | 833 | 293 | 1.30E-183 | – | |
| PANTHER | 541 | 833 | 293 | 1.30E-183 | – | |
| Pfam | 541 | 575 | 35 | 0.021 | ||
| ProSiteProfiles | 545 | 584 | 40 | 9.706 | ||
| ProSiteProfiles | 545 | 759 | 215 | 25.576 | ||
| PRINTS | 562 | 576 | 15 | 6.10E-06 | ||
| SMART | 578 | 618 | 41 | 0.093 | ||
| SMART | 624 | 666 | 43 | 0.11 | ||
| PRINTS | 653 | 667 | 15 | 6.10E-06 | ||
| SMART | 669 | 706 | 38 | 6.10E-06 | ||
| Pfam | 672 | 706 | 35 | 0.0086 | ||
| ProSiteProfiles | 676 | 715 | 40 | 12.146 | ||
| PRINTS | 693 | 707 | 15 | 6.10E-06 | ||
| SMART | 709 | 750 | 42 | 22 | ||
| SMART | 797 | 833 | 37 | 60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0874380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0874380.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.