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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016177
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We have found 343 results. Now displaying 3 of 7 with 50 rows per page. This search has taken 5.754s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0548550.1
n.a. PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max] gi|356520778|ref|XP_003529037.1| chr3 6099971 6101200 +
2 domain predictions
1 GO term
Lj3g3v0719980.1
n.a. PREDICTED: ethylene-responsive transcription factor-like protein At4g13040-like [Cicer arietinum] gi|502155948|ref|XP_004510251.1| chr3 8099854 8105031 +
2 domain predictions
1 GO term
Lj3g3v1778650.1
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor PLT2-like [Glycine max] gi|356541922|ref|XP_003539421.1| chr3 22562002 22564825 +
2 domain predictions
1 GO term
Lj3g3v2060630.1
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cicer arietinum] gi|502148088|ref|XP_004507033.1| chr3 26520278 26523230 -
2 domain predictions
1 GO term
Lj3g3v2060630.2
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Cicer arietinum] gi|502148088|ref|XP_004507033.1| chr3 26520278 26524367 -
2 domain predictions
1 GO term
Lj3g3v2060630.3
n.a. AP2 domain-containing transcription factor [Populus trichocarpa] gi|224072757|ref|XP_002303866.1| chr3 26523511 26525179 -
2 domain predictions
1 GO term
Lj3g3v2200290.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502147866|ref|XP_004506946.1| chr3 27268942 27271786 -
2 domain predictions
1 GO term
Lj3g3v2315340.1
n.a. PREDICTED: dehydration-responsive element-binding protein 3-like [Glycine max] gi|356522248|ref|XP_003529759.1| chr3 28288846 28290212 +
2 domain predictions
1 GO term
Lj3g3v2454420.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF023-like [Cicer arietinum] gi|502156835|ref|XP_004510664.1| chr3 30323258 30324346 +
2 domain predictions
1 GO term
Lj3g3v2575860.1
n.a. PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 [Cicer arietinum] gi|502156606|ref|XP_004510558.1| chr3 31401963 31405298 +
2 domain predictions
1 GO term
Lj3g3v2612440.1
n.a. AP2-like ethylene-responsive transcription factor ANT [Medicago truncatula] gi|357513955|ref|XP_003627266.1| chr3 32163063 32165456 -
2 domain predictions
1 GO term
Lj3g3v3107620.2
n.a. PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cicer arietinum] gi|502145380|ref|XP_004506004.1| chr3 38925093 38928773 -
2 domain predictions
1 GO term
Lj3g3v3107620.3
n.a. PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max] gi|356544634|ref|XP_003540753.1| chr3 38925093 38928773 -
2 domain predictions
1 GO term
Lj3g3v3107620.4
n.a. PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max] gi|356547208|ref|XP_003542008.1| chr3 38925093 38927047 -
2 domain predictions
1 GO term
Lj3g3v3245260.1
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor PLT2-like [Glycine max] gi|356541922|ref|XP_003539421.1| chr3 40051012 40054555 -
2 domain predictions
1 GO term
Lj3g3v3752200.1
n.a. PREDICTED: dehydration-responsive element-binding protein 3-like [Glycine max] gi|356531728|ref|XP_003534428.1| chr3 45392012 45393201 -
2 domain predictions
1 GO term
Lj4g3v0586770.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237569|dbj|BAG50061.1| chr4 9282338 9283051 +
2 domain predictions
1 GO term
Lj4g3v0708640.1
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine max] gi|356514362|ref|XP_003525875.1| chr4 11679747 11683614 -
2 domain predictions
1 GO term
Lj4g3v1221570.1
n.a. dehydration-responsive element binding protein 6 [Glycine max] gi|351726616|ref|NP_001235341.1| chr4 18203263 18203805 +
2 domain predictions
1 GO term
Lj4g3v1223730.1
n.a. Ethylene-responsive transcription factor TINY [Medicago truncatula] gi|357476799|ref|XP_003608685.1| chr4 18278665 18280210 +
2 domain predictions
1 GO term
Lj4g3v1333590.1
n.a. PREDICTED: dehydration-responsive element-binding protein 1D-like [Cicer arietinum] gi|502176076|ref|XP_004515794.1| chr4 20599621 20600406 +
2 domain predictions
1 GO term
Lj4g3v1333610.1
n.a. PREDICTED: dehydration-responsive element-binding protein 1D-like [Cicer arietinum] gi|502176076|ref|XP_004515794.1| chr4 20608377 20608693 +
2 domain predictions
1 GO term
Lj4g3v1334860.1
n.a. PREDICTED: dehydration-responsive element-binding protein 1D-like [Cicer arietinum] gi|502176076|ref|XP_004515794.1| chr4 20765713 20767004 -
2 domain predictions
1 GO term
Lj4g3v1770570.1
n.a. Ethylene-responsive transcription factor [Medicago truncatula] gi|357477723|ref|XP_003609147.1| chr4 25130987 25131925 +
2 domain predictions
1 GO term
Lj4g3v1880940.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502151520|ref|XP_004508481.1| chr4 26249972 26255746 +
2 domain predictions
1 GO term
Lj4g3v2120330.1
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Glycine max] gi|356546106|ref|XP_003541472.1| chr4 28951628 28958604 +
2 domain predictions
1 GO term
Lj4g3v2120330.2
n.a. PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Glycine max] gi|356546106|ref|XP_003541472.1| chr4 28956399 28958604 +
2 domain predictions
1 GO term
Lj4g3v2214780.1
n.a. Ethylene-responsive transcription factor RAP2-9 [Medicago truncatula] gi|357450169|ref|XP_003595361.1| chr4 30338338 30339606 -
2 domain predictions
1 GO term
Lj4g3v2290260.1
n.a. ethylene-responsive transcription factor RAP2-3-like [Glycine max] gi|374253830|ref|NP_001243393.1| chr4 31857578 31859223 -
2 domain predictions
1 GO term
Lj4g3v2369440.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF086-like [Glycine max] gi|356519988|ref|XP_003528650.1| chr4 32625153 32625905 -
2 domain predictions
1 GO term
Lj4g3v2604280.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF015-like [Glycine max] gi|356525286|ref|XP_003531257.1| chr4 35166016 35167611 +
2 domain predictions
1 GO term
Lj4g3v2775600.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237573|dbj|BAG50063.1| chr4 37194296 37196219 +
2 domain predictions
1 GO term
Lj4g3v2820190.1
n.a. dehydration responsive element binding protein [Trifolium repens] gi|289540950|gb|ADD09620.1| chr4 37680906 37683252 +
2 domain predictions
1 GO term
Lj4g3v2871880.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera] gi|225456495|ref|XP_002280924.1| chr4 38402735 38406087 -
2 domain predictions
1 GO term
Lj4g3v2917630.1
n.a. Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1| chr4 38825065 38833295 -
2 domain predictions
1 GO term
Lj4g3v2917630.3
n.a. Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1| chr4 38825065 38833295 -
2 domain predictions
1 GO term
Lj4g3v3002550.1
n.a. PREDICTED: ethylene-responsive transcription factor CRF2-like [Cicer arietinum] gi|502139611|ref|XP_004503833.1| chr4 39704775 39705764 +
2 domain predictions
1 GO term
Lj4g3v3055130.1
n.a. PREDICTED: dehydration-responsive element-binding protein 3-like [Cicer arietinum] gi|502138606|ref|XP_004503470.1| chr4 40714580 40715990 -
2 domain predictions
1 GO term
Lj5g3v0196880.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Glycine max] gi|356520885|ref|XP_003529090.1| chr5 1751862 1757978 -
2 domain predictions
1 GO term
Lj5g3v0712260.1
n.a. PREDICTED: dehydration-responsive element-binding protein 1F-like [Glycine max] gi|356548375|ref|XP_003542578.1| chr5 10651457 10652137 -
2 domain predictions
1 GO term
Lj5g3v1062530.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Glycine max] gi|356545857|ref|XP_003541350.1| chr5 17284444 17285398 +
2 domain predictions
1 GO term
Lj5g3v1062540.1
n.a. n.a. chr5 17284552 17297631 -
2 domain predictions
1 GO term
Lj5g3v1072600.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Glycine max] gi|356545859|ref|XP_003541351.1| chr5 17333764 17334579 +
2 domain predictions
1 GO term
Lj5g3v1156330.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF098-like [Fragaria vesca subsp]. vesca] gi|470111959|ref|XP_004292207.1| chr5 18439091 18439929 +
2 domain predictions
1 GO term
Lj5g3v1167370.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237553|dbj|BAG50053.1| chr5 18503361 18505203 +
2 domain predictions
1 GO term
Lj5g3v1602450.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237577|dbj|BAG50065.1| chr5 23405516 23406929 -
2 domain predictions
1 GO term
Lj5g3v1696710.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Cicer arietinum] gi|502118026|ref|XP_004496064.1| chr5 24021778 24023321 +
2 domain predictions
1 GO term
Lj5g3v1697290.1
n.a. n.a. chr5 24204496 24209758 -
2 domain predictions
1 GO term
Lj5g3v1697360.1
n.a. PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Glycine max] gi|356535482|ref|XP_003536274.1| chr5 24245192 24250352 -
2 domain predictions
1 GO term
Lj5g3v1776170.1
n.a. DNA-binding protein [Galega orientalis] gi|209419749|gb|ACI46678.1| chr5 25321211 25322993 -
2 domain predictions
1 GO term