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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 10 of 43 with 50 rows per page. This search has taken 5.976s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2372340.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max] gi|356566696|ref|XP_003551566.1| chr1 27833962 27838612 +
3 domain predictions
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Lj1g3v2377960.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Glycine max] gi|356521068|ref|XP_003529180.1| chr1 28075457 28079707 +
3 domain predictions
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Lj1g3v2377960.2
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357506189|ref|XP_003623383.1| chr1 28075457 28082926 +
3 domain predictions
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Lj1g3v2415470.1
n.a. TIR-NBS-LRR RCT1-like resistance protein [Medicago sativa] gi|193584702|gb|ACF19651.1| chr1 28332231 28337470 +
3 domain predictions
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Lj1g3v2419710.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28404983 28406710 +
2 domain predictions
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Lj1g3v2430810.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28423446 28424449 -
2 domain predictions
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Lj1g3v2430820.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28427676 28429304 -
2 domain predictions
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Lj1g3v2482450.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max] gi|356530171|ref|XP_003533657.1| chr1 28788792 28793022 -
3 domain predictions
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Lj1g3v2536060.1
n.a. PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max] gi|356566806|ref|XP_003551618.1| chr1 29149727 29155785 -
3 domain predictions
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Lj1g3v2536140.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform 1 [Glycine max] gi|356568252|ref|XP_003552327.1| chr1 29206704 29216049 +
2 domain predictions
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Lj1g3v2536140.2
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max] gi|356566812|ref|XP_003551621.1| chr1 29207517 29211706 +
3 domain predictions
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Lj1g3v2611620.2
n.a. Rpp4 candidate R5 [Glycine max] gi|328447250|gb|AEB06128.1| chr1 30296957 30313182 +
3 domain predictions
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Lj1g3v2727080.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357460983|ref|XP_003600773.1| chr1 31367454 31373834 +
3 domain predictions
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Lj1g3v2809340.1
n.a. leucine-rich repeat receptor-like protein [Lotus japonicus] gi|336088213|dbj|BAK39955.1| chr1 31969424 31972700 +
3 domain predictions
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Lj1g3v2883920.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like isoform X1 [Cicer arietinum] gi|502106207|ref|XP_004492888.1| chr1 32542899 32545980 -
3 domain predictions
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Lj1g3v2893970.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like isoform X1 [Cicer arietinum] gi|502106207|ref|XP_004492888.1| chr1 32569038 32571235 -
3 domain predictions
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Lj1g3v2910560.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like isoform X1 [Cicer arietinum] gi|502106329|ref|XP_004492917.1| chr1 32782596 32784388 -
3 domain predictions
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Lj1g3v2910590.1
n.a. n.a. chr1 32787406 32792227 +
2 domain predictions
 –
Lj1g3v2952270.1
n.a. PREDICTED: receptor-like protein kinase-like [Glycine max] gi|356529280|ref|XP_003533223.1| chr1 33453749 33456980 +
3 domain predictions
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Lj1g3v2952410.1
n.a. n.a. chr1 33467724 33473850 -
3 domain predictions
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Lj1g3v2982420.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357512425|ref|XP_003626501.1| chr1 34011821 34013820 +
2 domain predictions
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Lj1g3v3040500.1
n.a. Disease resistance RPP8-like protein [Medicago truncatula] gi|357449695|ref|XP_003595124.1| chr1 34722610 34728797 +
3 domain predictions
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Lj1g3v3103680.2
n.a. PREDICTED: protein NSP-INTERACTING KINASE 1-like [Glycine max] gi|356526591|ref|XP_003531900.1| chr1 35223426 35225517 -
3 domain predictions
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Lj1g3v3116520.1
n.a. PREDICTED: probable disease resistance protein At4g27220-like [Glycine max] gi|356567184|ref|XP_003551801.1| chr1 35476539 35478932 +
3 domain predictions
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Lj1g3v3171130.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max] gi|356499695|ref|XP_003518672.1| chr1 35938585 35942574 -
3 domain predictions
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Lj1g3v3207810.1
n.a. PREDICTED: F-box protein At2g39490-like [Cicer arietinum] gi|502102491|ref|XP_004492092.1| chr1 36373997 36378978 +
2 domain predictions
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Lj1g3v3317350.1
n.a. PREDICTED: F-box protein SKIP17-like [Glycine max] gi|356572196|ref|XP_003554256.1| chr1 37107273 37110283 -
2 domain predictions
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Lj1g3v3407720.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] gi|356509565|ref|XP_003523518.1| chr1 39408986 39415403 -
3 domain predictions
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Lj1g3v3464950.1
n.a. Transmembrane kinase-like 1 isoform 1 [Theobroma cacao] gi|508702106|gb|EOX94002.1| chr1 40251224 40254198 +
2 domain predictions
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Lj1g3v3556950.1
n.a. PREDICTED: DNA repair protein rhp7-like [Glycine max] gi|356565796|ref|XP_003551123.1| chr1 40833637 40837443 +
2 domain predictions
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Lj1g3v3590720.1
n.a. NBS-LRR resistance-like protein [Medicago truncatula] gi|357521387|ref|XP_003630982.1| chr1 41214382 41221908 +
2 domain predictions
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Lj1g3v3609520.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr1 41628479 41629611 +
2 domain predictions
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Lj1g3v3609530.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr1 41631360 41632474 +
2 domain predictions
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Lj1g3v3609550.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 41637233 41638107 -
2 domain predictions
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Lj1g3v3620590.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510195|ref|XP_003625386.1| chr1 41647807 41648891 +
2 domain predictions
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Lj1g3v3642040.2
n.a. functional candidate resistance protein KR1 [Glycine max] gi|351722733|ref|NP_001237766.1| chr1 41923710 41926609 +
2 domain predictions
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Lj1g3v3668840.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max] gi|356498764|ref|XP_003518219.1| chr1 42298961 42299523 -
3 domain predictions
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Lj1g3v3833990.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 43513859 43515374 -
2 domain predictions
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Lj1g3v3834000.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 43514156 43515374 -
2 domain predictions
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Lj1g3v3834010.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 43520724 43521437 -
2 domain predictions
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Lj1g3v3834020.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357439437|ref|XP_003589995.1| chr1 43524063 43525027 -
2 domain predictions
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Lj1g3v3834120.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max] gi|356570123|ref|XP_003553240.1| chr1 43589171 43594271 +
3 domain predictions
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Lj1g3v3834130.1
n.a. n.a. chr1 43594931 43606587 +
2 domain predictions
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Lj1g3v3834300.1
n.a. FBD-associated F-box protein [Medicago truncatula] gi|357466395|ref|XP_003603482.1| chr1 43686209 43687593 +
2 domain predictions
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Lj1g3v3835770.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 43869940 43872034 +
2 domain predictions
 –
Lj1g3v3835770.2
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 43869940 43871498 +
2 domain predictions
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Lj1g3v3902920.1
n.a. PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max] gi|356571615|ref|XP_003553972.1| chr1 45234542 45236005 -
2 domain predictions
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Lj1g3v3902950.1
n.a. PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max] gi|356561325|ref|XP_003548933.1| chr1 45236007 45236513 -
2 domain predictions
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Lj1g3v3964670.1
n.a. PREDICTED: phytosulfokine receptor 1-like [Glycine max] gi|356570241|ref|XP_003553298.1| chr1 46512608 46525646 -
3 domain predictions
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Lj1g3v3964670.2
n.a. PREDICTED: phytosulfokine receptor 1-like [Glycine max] gi|356570241|ref|XP_003553298.1| chr1 46517847 46525646 -
3 domain predictions
 –