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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001806
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 282 results. Now displaying 2 of 6 with 50 rows per page. This search has taken 5.333s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2185280.1
n.a. PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428021|ref|XP_002278633.1| chr1 26308038 26309966 +
2 domain predictions
2 GO terms
Lj1g3v2922940.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32864861 32870662 +
2 domain predictions
2 GO terms
Lj1g3v2922940.2
n.a. PREDICTED: ras-related protein RABD2a-like [Glycine max] gi|356568583|ref|XP_003552490.1| chr1 32864861 32869944 +
2 domain predictions
2 GO terms
Lj1g3v2922950.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32865973 32870253 +
2 domain predictions
2 GO terms
Lj1g3v3329660.1
n.a. RAB11G [Lotus japonicus] gi|1370154|emb|CAA98183.1| chr1 37765738 37767573 -
2 domain predictions
2 GO terms
Lj1g3v3329670.1
n.a. n.a. chr1 37765826 37767625 -
2 domain predictions
2 GO terms
Lj1g3v3331690.3
n.a. rac-type small GTP-binding protein [Cicer arietinum] gi|4586584|dbj|BAA76424.1| chr1 38205204 38207310 +
2 domain predictions
2 GO terms
Lj1g3v4432120.1
n.a. PREDICTED: mitochondrial Rho GTPase 1-like [Glycine max] gi|356503541|ref|XP_003520566.1| chr1 51611890 51619905 +
2 domain predictions
2 GO terms
Lj1g3v4554710.1
n.a. small GTP-binding protein [Pisum sativum] gi|871510|emb|CAA90080.1| chr1 53911379 53917452 +
2 domain predictions
2 GO terms
Lj1g3v4554720.1
n.a. RAB8B [Lotus japonicus] gi|1370192|emb|CAA98173.1| chr1 53912451 53917405 +
2 domain predictions
2 GO terms
Lj1g3v4668120.2
n.a. n.a. chr1 55386565 55389795 -
2 domain predictions
2 GO terms
Lj1g3v4668130.1
n.a. RAB1X [Lotus japonicus] gi|1370172|emb|CAA98163.1| chr1 55386583 55389733 -
2 domain predictions
2 GO terms
Lj1g3v5048260.1
n.a. RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1| chr1 61716280 61718109 +
2 domain predictions
2 GO terms
Lj1g3v5048270.1
n.a. RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1| chr1 61716381 61718248 +
2 domain predictions
2 GO terms
Lj1g3v5048280.1
n.a. RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1| chr1 61717375 61718247 +
2 domain predictions
2 GO terms
Lj2g3v0676890.1
n.a. PREDICTED: ras-related protein RABA6a-like [Glycine max] gi|356524680|ref|XP_003530956.1| chr2 10836300 10838774 +
2 domain predictions
2 GO terms
Lj2g3v0813080.1
n.a. PREDICTED: rac-like GTP-binding protein ARAC7-like [Cicer arietinum] gi|502163978|ref|XP_004513008.1| chr2 12736811 12741553 -
2 domain predictions
2 GO terms
Lj2g3v1670990.1
n.a. Rac-like GTP-binding protein [Medicago truncatula] gi|357483855|ref|XP_003612214.1| chr2 26036600 26039074 -
2 domain predictions
2 GO terms
Lj2g3v2507950.1
n.a. GTP binding protein [Medicago truncatula] gi|357460687|ref|XP_003600625.1| chr2 34869691 34875094 -
2 domain predictions
2 GO terms
Lj2g3v2661500.1
n.a. PREDICTED: ras-related protein Rab2BV-like [Glycine max] gi|356551598|ref|XP_003544161.1| chr2 35868950 35870869 -
2 domain predictions
2 GO terms
Lj3g3v0180800.2
n.a. PREDICTED: ras-related protein RABF2b-like [Glycine max] gi|356556138|ref|XP_003546384.1| chr3 1214873 1218151 +
2 domain predictions
2 GO terms
Lj3g3v0478030.1
n.a. PREDICTED: ras-related protein RABA4c-like [Glycine max] gi|356544190|ref|XP_003540537.1| chr3 5465187 5468044 -
2 domain predictions
2 GO terms
Lj3g3v1517390.1
n.a. RecName: Full=Ras-related protein Rab11Egi|1370150|emb|CAA98181.1| RAB11E [Lotus japonicus] gi|3024529|sp|Q40195.1|RB11E_LOTJA chr3 19313379 19318379 -
2 domain predictions
2 GO terms
Lj3g3v1517400.1
n.a. n.a. chr3 19313485 19318560 -
2 domain predictions
2 GO terms
Lj3g3v2478840.1
n.a. PREDICTED: ras-related protein RABA3-like [Glycine max] gi|356559913|ref|XP_003548240.1| chr3 30502273 30505517 +
2 domain predictions
2 GO terms
Lj3g3v2478840.2
n.a. PREDICTED: ras-related protein RABA3-like [Glycine max] gi|356559913|ref|XP_003548240.1| chr3 30503613 30505517 +
2 domain predictions
2 GO terms
Lj3g3v2838450.1
n.a. RAB11I [Lotus japonicus] gi|1370158|emb|CAA98185.1| chr3 34831343 34833079 -
2 domain predictions
2 GO terms
Lj3g3v2838460.1
n.a. n.a. chr3 34831465 34833344 -
2 domain predictions
2 GO terms
Lj3g3v2838500.1
n.a. RecName: Full=Rac-like GTP-binding protein RAC2; Flags: Precursorgi|1370201|emb|CAA98190.1| RAC2 [Lotus japonicus] gi|2500198|sp|Q40220.1|RAC2_LOTJA chr3 34837188 34839344 -
2 domain predictions
2 GO terms
Lj3g3v2838510.1
n.a. n.a. chr3 34837256 34839648 -
2 domain predictions
2 GO terms
Lj3g3v2903000.1
n.a. PREDICTED: septum-promoting GTP-binding protein 1-like [Cicer arietinum] gi|502171628|ref|XP_004515072.1| chr3 35994471 35997730 -
2 domain predictions
2 GO terms
Lj3g3v3166220.1
n.a. RAB8D [Lotus japonicus] gi|1370196|emb|CAA98175.1| chr3 39186474 39190073 -
2 domain predictions
2 GO terms
Lj3g3v3166230.1
n.a. n.a. chr3 39186715 39190266 -
2 domain predictions
2 GO terms
Lj3g3v3236550.1
n.a. RecName: Full=Ras-related protein Rab11Cgi|1370146|emb|CAA98179.1| RAB11C [Lotus japonicus] gi|3024501|sp|Q40193.1|RB11C_LOTJA chr3 39840910 39842890 -
2 domain predictions
2 GO terms
Lj3g3v3236560.1
n.a. n.a. chr3 39840929 39843245 -
2 domain predictions
2 GO terms
Lj3g3v3338580.1
n.a. RAB7C [Lotus japonicus] gi|1370186|emb|CAA98170.1| chr3 41052533 41055652 -
2 domain predictions
2 GO terms
Lj3g3v3338590.1
n.a. n.a. chr3 41052635 41055758 -
2 domain predictions
2 GO terms
Lj3g3v3338590.2
n.a. n.a. chr3 41053525 41054114 -
2 domain predictions
2 GO terms
Lj3g3v3363320.1
n.a. CM0216.310.nc [Lotus japonicus] gi|164564733|dbj|BAF98215.1| chr3 41370119 41372484 +
2 domain predictions
2 GO terms
Lj3g3v3453430.1
n.a. PREDICTED: LOW QUALITY PROTEIN: rac-like GTP-binding protein RAC1-like [Cicer arietinum] gi|502144966|ref|XP_004505814.1| chr3 42222016 42225196 -
2 domain predictions
2 GO terms
Lj4g3v0282250.1
n.a. PREDICTED: ras-related protein RABA5b-like [Cicer arietinum] gi|502103138|ref|XP_004492211.1| chr4 3386850 3390598 -
2 domain predictions
2 GO terms
Lj4g3v0486450.1
n.a. PREDICTED: ras-related protein RABA1f-like [Cicer arietinum] gi|502078151|ref|XP_004485855.1| chr4 8263224 8266217 -
2 domain predictions
2 GO terms
Lj4g3v0486460.1
n.a. n.a. chr4 8263300 8266331 -
2 domain predictions
2 GO terms
Lj4g3v1833610.1
n.a. PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] gi|356515468|ref|XP_003526422.1| chr4 25603976 25605554 +
2 domain predictions
2 GO terms
Lj4g3v2742810.1
n.a. RAB1Y [Lotus japonicus] gi|1370174|emb|CAA98164.1| chr4 36831906 36835018 -
2 domain predictions
2 GO terms
Lj4g3v2742820.1
n.a. n.a. chr4 36831951 36835262 -
2 domain predictions
2 GO terms
Lj4g3v2742820.2
n.a. n.a. chr4 36833527 36835262 -
2 domain predictions
2 GO terms
Lj4g3v2786890.1
n.a. PREDICTED: ras-related protein Rab7-like [Cicer arietinum] gi|502140003|ref|XP_004504012.1| chr4 37359913 37362983 -
2 domain predictions
2 GO terms
Lj4g3v2787000.1
n.a. Ras-related small GTP-binding family protein [Theobroma cacao] gi|508700403|gb|EOX92299.1| chr4 37366016 37370817 +
2 domain predictions
2 GO terms
Lj4g3v3081730.1
n.a. Ras-related protein Rab-5C [Medicago truncatula] gi|357521023|ref|XP_003630800.1| chr4 40938437 40940785 -
2 domain predictions
2 GO terms