Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003594
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 130 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 5.708s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0121000.1
n.a. DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000 LjG1.1_chr3 14822816 14830581 +
2 domain predictions
 –
LotjaGi3g1v0121000.2
n.a. DNA topoisomerase 2; TAIR: AT3G23890.2 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000 LjG1.1_chr3 14823082 14830141 +
2 domain predictions
 –
LotjaGi3g1v0293000.1
n.a. DNA topoisomerase 6 subunit B; TAIR: AT3G20780.1 topoisomerase 6 subunit B; Swiss-Prot: sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B; TrEMBL-Plants: tr|I1M541|I1M541_SOYBN DNA topoisomerase 6 subunit B; Found in the gene: LotjaGi3g1v0293000 LjG1.1_chr3 59696178 59702929 -
2 domain predictions
 –
LotjaGi4g1v0129800.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|K7MGY5|K7MGY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129800 LjG1.1_chr4 18987983 18994802 +
3 domain predictions
 –
LotjaGi4g1v0313600_LC.1
n.a. Pyruvate dehydrogenase kinase; TAIR: AT3G06483.1 pyruvate dehydrogenase kinase; Swiss-Prot: sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase ](acetyl-transferring)] kinase, mitochondrial; TrEMBL-Plants: tr|A0A0S3RH61|A0A0S3RH61_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0313600_LC LjG1.1_chr4 69043217 69046704 +
3 domain predictions
 –
LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
3 domain predictions
 –
LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
3 domain predictions
 –
LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
3 domain predictions
 –
LotjaGi4g1v0459800.1
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061838 83069902 -
3 domain predictions
 –
LotjaGi4g1v0459800.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061938 83069826 -
3 domain predictions
 –
LotjaGi4g1v0459800.3
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061985 83069668 -
3 domain predictions
 –
LotjaGi5g1v0005000.1
n.a. Chaperone protein htpG family protein; TAIR: AT4G24190.1 Chaperone protein htpG family protein; Swiss-Prot: sp|P35016|ENPL_CATRO Endoplasmin homolog; TrEMBL-Plants: tr|I1MC32|I1MC32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0005000 LjG1.1_chr5 1139878 1145624 +
3 domain predictions
 –
LotjaGi5g1v0050100.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8435089 8444095 +
3 domain predictions
 –
LotjaGi5g1v0050100.2
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8436374 8442779 +
3 domain predictions
 –
LotjaGi5g1v0235100.1
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323062 54330218 -
3 domain predictions
 –
LotjaGi5g1v0235100.2
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328628 -
3 domain predictions
 –
LotjaGi5g1v0235100.3
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328849 -
3 domain predictions
 –
LotjaGi5g1v0235100.4
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328859 -
3 domain predictions
 –
LotjaGi5g1v0296600.1
n.a. Heat shock protein 90; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|A0A0A0L6P6|A0A0A0L6P6_CUCSA Uncharacterized protein; Found in the gene: LotjaGi5g1v0296600 LjG1.1_chr5 61348275 61351191 -
3 domain predictions
 –
LotjaGi5g1v0296600.3
n.a. Chaperone protein htpG family protein; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|A0A0V0IQG0|A0A0V0IQG0_SOLCH Putative heat shock protein 83-like; Found in the gene: LotjaGi5g1v0296600 LjG1.1_chr5 61348484 61351028 -
3 domain predictions
 –
LotjaGi5g1v0296600.4
n.a. Chaperone protein htpG family protein; TAIR: AT5G52640.1 heat shock-like protein; Swiss-Prot: sp|P51819|HSP83_IPONI Heat shock protein 83; TrEMBL-Plants: tr|Q71EE1|Q71EE1_HEVBR Heat shock protein; Found in the gene: LotjaGi5g1v0296600 LjG1.1_chr5 61348484 61351028 -
3 domain predictions
 –
LotjaGi6g1v0139700.1
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|T2AUM9|T2AUM9_POPTO HSP90; Found in the gene: LotjaGi6g1v0139700 LjG1.1_chr6 40657671 40661417 +
3 domain predictions
 –
LotjaGi6g1v0139700.2
n.a. Chaperone protein htpG family protein; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|Q69QQ6|HSP82_ORYSJ Heat shock protein 81-2; TrEMBL-Plants: tr|A0A0D2SEK3|A0A0D2SEK3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi6g1v0139700 LjG1.1_chr6 40657919 40660597 +
3 domain predictions
 –
LotjaGi6g1v0139700.3
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|D6C500|D6C500_SOYBN HSP90-2; Found in the gene: LotjaGi6g1v0139700 LjG1.1_chr6 40657919 40660597 +
3 domain predictions
 –
LotjaGi6g1v0139700.4
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|T2AUM9|T2AUM9_POPTO HSP90; Found in the gene: LotjaGi6g1v0139700 LjG1.1_chr6 40657934 40660597 +
2 domain predictions
 –
LotjaGi6g1v0210900.1
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50829966 50836297 -
3 domain predictions
 –
LotjaGi6g1v0210900.3
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50832024 50836033 -
3 domain predictions
 –
LotjaGi6g1v0217100.1
n.a. Mitochondrial pyruvate dehydrogenase kinase; TAIR: AT3G06483.1 pyruvate dehydrogenase kinase; Swiss-Prot: sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase ](acetyl-transferring)] kinase, mitochondrial; TrEMBL-Plants: tr|I3S8V4|I3S8V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0217100 LjG1.1_chr6 51899282 51905333 +
3 domain predictions
 –
LotjaGi6g1v0217100.2
n.a. Mitochondrial pyruvate dehydrogenase kinase; TAIR: AT3G06483.1 pyruvate dehydrogenase kinase; Swiss-Prot: sp|Q9SBJ1|PDK_ARATH [Pyruvate dehydrogenase ](acetyl-transferring)] kinase, mitochondrial; TrEMBL-Plants: tr|I3S8V4|I3S8V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0217100 LjG1.1_chr6 51901692 51904180 +
3 domain predictions
 –
LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
3 domain predictions
 –