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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011991
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 324 results. Now displaying 6 of 7 with 50 rows per page. This search has taken 6.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v2692930.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356554611|ref|XP_003545638.1| chr3 32771071 32777101 +
2 domain predictions
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Lj3g3v2949670.1
n.a. PREDICTED: transcription factor E2FB-like isoform X2 [Cicer arietinum] gi|502145866|ref|XP_004506214.1| chr3 36802114 36805996 +
3 domain predictions
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Lj3g3v2949670.2
n.a. PREDICTED: transcription factor E2FB-like isoform X2 [Cicer arietinum] gi|502145866|ref|XP_004506214.1| chr3 36802114 36806807 +
3 domain predictions
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Lj3g3v3338570.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3D-like [Cicer arietinum] gi|502149174|ref|XP_004507421.1| chr3 41045149 41050634 +
2 domain predictions
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Lj3g3v3639960.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max] gi|356543070|ref|XP_003539986.1| chr3 44335541 44339576 -
2 domain predictions
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Lj3g3v3736620.1
n.a. PREDICTED: COP9 signalosome complex subunit 4-like [Glycine max] gi|356531693|ref|XP_003534411.1| chr3 45165371 45170585 -
3 domain predictions
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Lj4g3v0120130.1
n.a. PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1| chr4 1242513 1249284 +
3 domain predictions
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Lj4g3v0120130.2
n.a. PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1| chr4 1242513 1249920 +
3 domain predictions
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Lj4g3v0120130.3
n.a. PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1| chr4 1242513 1249284 +
3 domain predictions
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Lj4g3v0450640.1
n.a. PREDICTED: sister chromatid cohesion 1 protein 1-like [Glycine max] gi|356553767|ref|XP_003545224.1| chr4 6378132 6379415 +
2 domain predictions
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Lj4g3v0451130.1
n.a. PREDICTED: heat stress transcription factor B-2a-like [Glycine max] gi|356495198|ref|XP_003516466.1| chr4 6614194 6615953 -
3 domain predictions
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Lj4g3v0473820.1
n.a. PREDICTED: isoflavone-7-O-methyltransferase 9-like [Cicer arietinum] gi|502143585|ref|XP_004505392.1| chr4 7497860 7498315 -
3 domain predictions
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Lj4g3v0484930.1
n.a. RecName: Full=Isoflavone 4'-O-methyltransferase; Short=LjHI4'OMT; AltName: Full=2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase; AltName: Full=S-adenosyl-L-methionine: 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferasegi|28804596|dbj|BAC58013.1| S-adenosyl-L-methionine: 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase [Lotus japonicus] gi|75146881|sp|Q84KK4.1|I4OMT_LOTJA chr4 7930067 7932165 -
3 domain predictions
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Lj4g3v0484940.1
n.a. n.a. chr4 7930383 7932459 -
3 domain predictions
 –
Lj4g3v0485870.1
n.a. RecName: Full=Isoflavone 4'-O-methyltransferase; Short=LjHI4'OMT; AltName: Full=2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase; AltName: Full=S-adenosyl-L-methionine: 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferasegi|28804596|dbj|BAC58013.1| S-adenosyl-L-methionine: 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase [Lotus japonicus] gi|75146881|sp|Q84KK4.1|I4OMT_LOTJA chr4 8116837 8123578 +
3 domain predictions
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Lj4g3v0573940.1
n.a. La-related protein [Medicago truncatula] gi|357475507|ref|XP_003608039.1| chr4 9025312 9028496 +
3 domain predictions
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Lj4g3v0599890.1
n.a. PREDICTED: general transcription factor IIE subunit 1-like [Cicer arietinum] gi|502151714|ref|XP_004508577.1| chr4 9339573 9342033 -
3 domain predictions
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Lj4g3v0630990.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1| chr4 9900543 9904467 +
3 domain predictions
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Lj4g3v0631000.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1| chr4 9900543 9905357 +
3 domain predictions
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Lj4g3v0756940.1
n.a. PREDICTED: telomere repeat-binding factor 2-like [Cicer arietinum] gi|502152722|ref|XP_004509061.1| chr4 11810523 11819021 +
3 domain predictions
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Lj4g3v1389180.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr4 21591232 21601994 -
3 domain predictions
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Lj4g3v1440950.1
n.a. Anaphase-promoting complex subunit [Medicago truncatula] gi|357474951|ref|XP_003607761.1| chr4 22425366 22425954 +
2 domain predictions
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Lj4g3v1561700.1
n.a. PREDICTED: E2F transcription factor-like E2FE-like isoform X1 [Cicer arietinum] gi|502152216|ref|XP_004508820.1| chr4 23267879 23272243 -
3 domain predictions
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Lj4g3v1983480.1
n.a. n.a. chr4 27593378 27599909 -
2 domain predictions
 –
Lj4g3v2119290.1
n.a. PREDICTED: replication protein A 32 kDa subunit B-like isoform X2 [Cicer arietinum] gi|502150250|ref|XP_004507862.1| chr4 28926602 28930092 +
3 domain predictions
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Lj4g3v2215250.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Glycine max] gi|356547978|ref|XP_003542381.1| chr4 30611055 30613642 +
3 domain predictions
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Lj4g3v2367300.1
n.a. PREDICTED: cullin-1-like [Glycine max] gi|356556122|ref|XP_003546376.1| chr4 32551005 32557712 +
3 domain predictions
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Lj4g3v2367300.2
n.a. PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1| chr4 32553039 32557712 +
3 domain predictions
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Lj4g3v2618490.1
n.a. heat stress transcription factor A-4a-like protein [Caragana korshinskii] gi|480328109|gb|AGJ83756.1| chr4 35617248 35619279 -
3 domain predictions
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Lj4g3v2775610.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Cicer arietinum] gi|502132476|ref|XP_004501379.1| chr4 37197795 37203229 -
3 domain predictions
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Lj4g3v3099550.1
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr4 41315105 41320386 -
2 domain predictions
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Lj4g3v3099550.3
n.a. disease resistance protein [Phaseolus vulgaris] gi|74231152|gb|ABA00702.1| chr4 41315105 41320386 -
2 domain predictions
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Lj4g3v3114650.1
n.a. HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1| chr4 42047142 42049604 +
3 domain predictions
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Lj5g3v0089470.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545124|ref|XP_003540995.1| chr5 660669 670778 -
2 domain predictions
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Lj5g3v0091560.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr5 700394 704580 +
3 domain predictions
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Lj5g3v0091560.2
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 6-like isoform X2 [Cicer arietinum] gi|502176264|ref|XP_004515835.1| chr5 700534 703916 +
3 domain predictions
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Lj5g3v0104820.1
n.a. PREDICTED: cylicin-1-like [Cicer arietinum] gi|502179474|ref|XP_004516436.1| chr5 872780 873055 -
2 domain predictions
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Lj5g3v0242270.2
n.a. La-related protein [Medicago truncatula] gi|357438541|ref|XP_003589546.1| chr5 2017622 2021572 +
3 domain predictions
 –
Lj5g3v0586520.1
n.a. PREDICTED: replication protein A 32 kDa subunit A-like [Cicer arietinum] gi|502124582|ref|XP_004498588.1| chr5 6826472 6830204 -
3 domain predictions
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Lj5g3v0615710.1
n.a. PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi|502121820|ref|XP_004497452.1| chr5 7895312 7896984 +
2 domain predictions
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Lj5g3v0657170.1
n.a. PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X1 [Cicer arietinum] gi|502111206|ref|XP_004493985.1| chr5 9051344 9055886 -
2 domain predictions
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Lj5g3v0659340.1
n.a. PREDICTED: RNA polymerase sigma factor rpoD [Glycine max] gi|356548319|ref|XP_003542550.1| chr5 9155878 9161217 -
2 domain predictions
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Lj5g3v0816340.1
n.a. PREDICTED: transcription factor E2FA-like [Cicer arietinum] gi|502122297|ref|XP_004497676.1| chr5 11666592 11671507 -
3 domain predictions
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Lj5g3v0875450.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine max] gi|356500541|ref|XP_003519090.1| chr5 12652412 12655673 -
3 domain predictions
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Lj5g3v0875650.1
n.a. NBS-LRR resistance-like protein 4G [Medicago truncatula] gi|357515077|ref|XP_003627827.1| chr5 12748785 12757034 +
2 domain predictions
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Lj5g3v1016990.1
n.a. histone H1.2 [Arabidopsis thaliana] gi|334184589|ref|NP_001189643.1| chr5 16982541 16983587 +
3 domain predictions
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Lj5g3v1062470.1
n.a. PREDICTED: CDT1-like protein a, chloroplastic-like [Cicer arietinum] gi|502115034|ref|XP_004495110.1| chr5 17256932 17260439 -
2 domain predictions
 –
Lj5g3v1381570.1
n.a. n.a. chr5 20835339 20836594 +
3 domain predictions
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Lj5g3v1381580.1
n.a. histone H1 [Pisum sativum] gi|556345|gb|AAA50303.1| chr5 20835522 20836594 -
3 domain predictions
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Lj5g3v1496740.2
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Glycine max] gi|356574959|ref|XP_003555610.1| chr5 21720168 21725651 +
2 domain predictions
 –