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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013201
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 132 results. Now displaying 2 of 3 with 50 rows per page. This search has taken 5.296s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0424400.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P25804|CYSP_PEA Cysteine proteinase 15A; TrEMBL-Plants: tr|A0A151RQM7|A0A151RQM7_CAJCA Cysteine proteinase RD19a; Found in the gene: LotjaGi1g1v0424400 LjG1.1_chr1 91892437 91895727 +
3 domain predictions
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LotjaGi1g1v0569300.1
n.a. Cysteine proteinase; TAIR: AT4G35350.1 xylem cysteine peptidase 1; Swiss-Prot: sp|O65493|XCP1_ARATH Cysteine protease XCP1; TrEMBL-Plants: tr|I1K796|I1K796_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569300 LjG1.1_chr1 110228376 110230421 +
3 domain predictions
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LotjaGi2g1v0207500_LC.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|P14658|CYSP_TRYBB Cysteine proteinase; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0207500_LC LjG1.1_chr2 65171201 65173910 +
2 domain predictions
 –
LotjaGi2g1v0215000_LC.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0215000_LC LjG1.1_chr2 66595719 66597708 -
2 domain predictions
 –
LotjaGi2g1v0215000_LC.2
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0215000_LC LjG1.1_chr2 66595901 66597708 -
2 domain predictions
 –
LotjaGi2g1v0358200_LC.1
n.a. Cysteine protease, putative; TAIR: AT2G34080.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ4|A4PIZ4_LOTJA Cysteine proteinase; Found in the gene: LotjaGi2g1v0358200_LC LjG1.1_chr2 85539867 85540359 +
3 domain predictions
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LotjaGi2g1v0363900_LC.1
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P05994|PAPA4_CARPA Papaya proteinase 4; TrEMBL-Plants: tr|I3SNI8|I3SNI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0363900_LC LjG1.1_chr2 86149905 86150347 +
3 domain predictions
 –
LotjaGi2g1v0445900_LC.1
n.a. Cysteine protease; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0445900_LC LjG1.1_chr2 94089101 94091011 -
2 domain predictions
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LotjaGi3g1v0028700_LC.1
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P36184|ACP1_ENTHI Cysteine proteinase ACP1; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0028700_LC LjG1.1_chr3 3165977 3166737 +
2 domain predictions
 –
LotjaGi3g1v0037700_LC.1
n.a. Cysteine protease; TAIR: AT3G45310.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8RWQ9|ALEUL_ARATH Thiol protease aleurain-like; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0037700_LC LjG1.1_chr3 4089575 4091299 -
2 domain predictions
 –
LotjaGi3g1v0245200.1
n.a. Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|A0A1J7H619|A0A1J7H619_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0245200 LjG1.1_chr3 40114770 40118851 -
3 domain predictions
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LotjaGi3g1v0245300.1
n.a. Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|G8A001|G8A001_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi3g1v0245300 LjG1.1_chr3 40120112 40121888 -
3 domain predictions
 –
LotjaGi3g1v0248000.1
n.a. Cysteine protease; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|K7K0Y1|K7K0Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0248000 LjG1.1_chr3 40948841 40949961 -
3 domain predictions
 –
LotjaGi3g1v0249300.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|K4MQ82|K4MQ82_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0249300 LjG1.1_chr3 41404768 41405940 +
3 domain predictions
 –
LotjaGi3g1v0254300.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ3|A4PIZ3_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0254300 LjG1.1_chr3 43160081 43161221 -
3 domain predictions
 –
LotjaGi3g1v0306300_LC.1
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64593193 64624553 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.10
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|O23791|BROM1_ANACO Fruit bromelain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64598979 64624553 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.11
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64598979 64624553 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.14
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64599001 64600206 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.15
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64599001 64623905 +
3 domain predictions
 –
LotjaGi3g1v0306300_LC.16
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64599001 64624573 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.17
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64599004 64600145 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.18
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64599004 64624473 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.19
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64607356 64609882 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.20
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64608648 64624473 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.21
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64608648 64624473 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.22
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64622916 64625234 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.23
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64622916 64625234 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.3
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64598084 64600507 +
2 domain predictions
 –
LotjaGi3g1v0306300_LC.4
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0306300_LC LjG1.1_chr3 64598084 64600507 +
2 domain predictions
 –
LotjaGi3g1v0489300.1
n.a. Cysteine protease; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ2|A4PIZ2_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0489300 LjG1.1_chr3 90722326 90723451 +
3 domain predictions
 –
LotjaGi3g1v0489400.1
n.a. Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ2|A4PIZ2_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0489400 LjG1.1_chr3 90726812 90728421 +
3 domain predictions
 –
LotjaGi3g1v0508700.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|B0BL96|B0BL96_LOTJA CM0216.510.nc protein; Found in the gene: LotjaGi3g1v0508700 LjG1.1_chr3 92584990 92587220 -
3 domain predictions
 –
LotjaGi3g1v0512500.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|Q70I35|Q70I35_LOTJA Papain-like cysteine proteinase-like protein 2; Found in the gene: LotjaGi3g1v0512500 LjG1.1_chr3 92941463 92943460 +
3 domain predictions
 –
LotjaGi3g1v0512700.1
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|B0BL95|B0BL95_LOTJA CM0216.500.nc protein; Found in the gene: LotjaGi3g1v0512700 LjG1.1_chr3 92947665 92949409 +
3 domain predictions
 –
LotjaGi3g1v0530200_LC.1
n.a. Cysteine protease; TAIR: AT1G29090.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P00785|ACTN_ACTCH Actinidain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0530200_LC LjG1.1_chr3 94721543 94724078 +
3 domain predictions
 –
LotjaGi3g1v0530200_LC.2
n.a. Cysteine protease; TAIR: AT1G29090.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P00785|ACTN_ACTCH Actinidain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0530200_LC LjG1.1_chr3 94721543 94724078 +
3 domain predictions
 –
LotjaGi3g1v0530200_LC.3
n.a. Cysteine protease; TAIR: AT1G29090.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P00785|ACTN_ACTCH Actinidain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0530200_LC LjG1.1_chr3 94721633 94723598 +
3 domain predictions
 –
LotjaGi4g1v0101100.1
n.a. Cysteine protease; TAIR: AT1G47128.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|P43297|RD21A_ARATH Cysteine proteinase RD21A; TrEMBL-Plants: tr|I1K268|I1K268_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0101100 LjG1.1_chr4 13861458 13864891 -
3 domain predictions
 –
LotjaGi4g1v0215600_LC.1
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.10
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14658|CYSP_TRYBB Cysteine proteinase; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.11
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445673 50449317 -
3 domain predictions
 –
LotjaGi4g1v0215600_LC.12
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50446144 50448505 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.13
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50446144 50448505 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.14
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50446837 50448505 -
3 domain predictions
 –
LotjaGi4g1v0215600_LC.15
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q7XWK5|SAG39_ORYSJ Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50466696 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.16
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50466696 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.17
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50466696 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.18
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14658|CYSP_TRYBB Cysteine proteinase; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50466696 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215600_LC.19
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q7XWK5|SAG39_ORYSJ Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50467230 50469819 -
2 domain predictions
 –