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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020568
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 224 results. Now displaying 2 of 5 with 50 rows per page. This search has taken 5.339s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v3599440.1
n.a. PREDICTED: 37S ribosomal protein S9, mitochondrial-like [Cicer arietinum] gi|502176730|ref|XP_004515926.1| chr3 43527298 43530619 +
2 domain predictions
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Lj4g3v0462600.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6895339 6898171 -
2 domain predictions
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Lj4g3v0620250.1
n.a. PREDICTED: 40S ribosomal protein S16-like [Cicer arietinum] gi|502143172|ref|XP_004505244.1| chr4 9531952 9536027 +
2 domain predictions
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Lj4g3v0987840.1
n.a. PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1| chr4 14389313 14394871 -
2 domain predictions
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Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
2 domain predictions
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Lj4g3v2263880.1
n.a. PREDICTED: galactokinase-like [Cicer arietinum] gi|502150796|ref|XP_004508128.1| chr4 31361898 31367834 -
2 domain predictions
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Lj4g3v3015190.1
n.a. Galactokinase [Medicago truncatula] gi|357520677|ref|XP_003630627.1| chr4 40375349 40384493 +
2 domain predictions
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Lj4g3v3113160.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr4 41598383 41600418 +
2 domain predictions
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Lj5g3v0238150.1
n.a. PREDICTED: endoplasmin homolog [Glycine max] gi|356553371|ref|XP_003545030.1| chr5 1947402 1952671 -
2 domain predictions
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Lj5g3v0308340.1
n.a. PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Glycine max] gi|356552153|ref|XP_003544434.1| chr5 2838091 2840001 +
2 domain predictions
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Lj5g3v0308350.1
n.a. PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Cicer arietinum] gi|502125913|ref|XP_004499112.1| chr5 2838091 2840113 +
2 domain predictions
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Lj5g3v0510890.1
n.a. PREDICTED: exosome complex component RRP42-like [Glycine max] gi|356559534|ref|XP_003548054.1| chr5 5325356 5331454 +
2 domain predictions
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Lj5g3v0510890.2
n.a. PREDICTED: exosome complex component RRP42-like [Glycine max] gi|356559534|ref|XP_003548054.1| chr5 5325356 5331454 +
2 domain predictions
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Lj5g3v1631040.1
n.a. PREDICTED: mismatch repair endonuclease PMS2-like [Glycine max] gi|356502864|ref|XP_003520235.1| chr5 23651550 23657326 -
2 domain predictions
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Lj5g3v2046060.1
n.a. PREDICTED: imidazoleglycerol-phosphate dehydratase-like isoform X2 [Cicer arietinum] gi|502119750|ref|XP_004496726.1| chr5 29455848 29460065 -
2 domain predictions
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Lj5g3v2240960.1
n.a. PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum] gi|502121015|ref|XP_004497159.1| chr5 32242930 32247786 -
2 domain predictions
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Lj6g3v0704480.1
n.a. heat shock protein 90 [Vitis pseudoreticulata] gi|159459822|gb|ABW96308.1| chr6 6787554 6790252 +
2 domain predictions
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Lj6g3v0704490.1
n.a. n.a. chr6 6788711 6790856 -
2 domain predictions
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Lj6g3v1008180.1
n.a. PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like [Cicer arietinum] gi|502126787|ref|XP_004499437.1| chr6 11123384 11127831 -
2 domain predictions
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Lj6g3v1918200.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr6 21702343 21706161 +
2 domain predictions
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LotjaGi1g1v0000900.1
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357693 361368 -
2 domain predictions
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LotjaGi1g1v0000900.2
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 357785 361328 -
2 domain predictions
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LotjaGi1g1v0000900.3
n.a. Homoserine kinase; TAIR: AT2G17265.1 homoserine kinase; Swiss-Prot: sp|Q8L7R2|KHSE_ARATH Homoserine kinase; TrEMBL-Plants: tr|D2DKF1|D2DKF1_SOYBN Homoserine kinase; Found in the gene: LotjaGi1g1v0000900 LjG1.1_chr1 360062 361195 -
2 domain predictions
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LotjaGi1g1v0009000.1
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163263 1168999 -
2 domain predictions
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LotjaGi1g1v0009000.2
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163263 1175134 -
2 domain predictions
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LotjaGi1g1v0009000.3
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
2 domain predictions
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LotjaGi1g1v0009000.4
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
2 domain predictions
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LotjaGi1g1v0009000.5
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
2 domain predictions
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LotjaGi1g1v0009000.6
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A151S032|A0A151S032_CAJCA Heat shock protein 90; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1163635 1168752 -
2 domain predictions
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LotjaGi1g1v0009000.7
n.a. Chaperone protein htpG family protein; TAIR: AT3G07770.1 HEAT SHOCK PROTEIN 89.1; Swiss-Prot: sp|F4JFN3|HS906_ARATH Heat shock protein 90-6, mitochondrial; TrEMBL-Plants: tr|A0A1J7HUH6|A0A1J7HUH6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0009000 LjG1.1_chr1 1169980 1175110 -
2 domain predictions
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LotjaGi1g1v0013800.1
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792834 1796269 +
2 domain predictions
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LotjaGi1g1v0013800.2
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792982 1795827 +
2 domain predictions
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LotjaGi1g1v0013800.3
n.a. Chaperone protein htpG family protein; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|Q69QQ6|HSP82_ORYSJ Heat shock protein 81-2; TrEMBL-Plants: tr|B6EBD7|B6EBD7_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792982 1795827 +
2 domain predictions
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LotjaGi1g1v0013800.4
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|F6HCU9|F6HCU9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792996 1795827 +
2 domain predictions
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LotjaGi1g1v0013800.5
n.a. Heat shock protein 90; TAIR: AT5G56000.1 HEAT SHOCK PROTEIN 81.4; Swiss-Prot: sp|P36181|HSP80_SOLLC Heat shock cognate protein 80; TrEMBL-Plants: tr|B6EBD7|B6EBD7_SOYBN Heat shock protein 90-1; Found in the gene: LotjaGi1g1v0013800 LjG1.1_chr1 1792996 1795827 +
2 domain predictions
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LotjaGi1g1v0182600_LC.1
n.a. Exosome complex exonuclease RRP46 like; TAIR: AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein; Swiss-Prot: sp|Q9LX74|EXOS5_ARATH Exosome complex exonuclease RRP46 homolog; TrEMBL-Plants: tr|I3SU44|I3SU44_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0182600_LC LjG1.1_chr1 35603478 35607406 +
2 domain predictions
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LotjaGi1g1v0283600.1
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69065685 69076106 -
2 domain predictions
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LotjaGi1g1v0283600.3
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069563 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.4
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075661 -
2 domain predictions
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LotjaGi1g1v0283600.5
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.6
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075775 -
2 domain predictions
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LotjaGi1g1v0283600.7
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|A0A075EBV2|A0A075EBV2_ASTME Phosphomevalonate kinase 1; Found in the gene: LotjaGi1g1v0283600 LjG1.1_chr1 69069617 69075778 -
2 domain predictions
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LotjaGi1g1v0286000_LC.1
n.a. Phosphomevalonate kinase; TAIR: AT1G31910.1 GHMP kinase family protein; Swiss-Prot: sp|Q9C6T1|PMK_ARATH Phosphomevalonate kinase, peroxisomal; TrEMBL-Plants: tr|C6T7N7|C6T7N7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0286000_LC LjG1.1_chr1 69445776 69448535 -
2 domain predictions
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LotjaGi1g1v0293300.2
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|A0A151TY35|A0A151TY35_CAJCA L-fucose kinase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71151089 71156825 -
2 domain predictions
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LotjaGi1g1v0293300.3
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|A0A151TY35|A0A151TY35_CAJCA L-fucose kinase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71151089 71156856 -
2 domain predictions
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LotjaGi1g1v0293300.4
n.a. Bifunctional fucokinase/fucose pyrophosphorylase; TAIR: AT1G01220.1 L-fucokinase/GDP-L-fucose pyrophosphorylase; Swiss-Prot: sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase; TrEMBL-Plants: tr|A0A151TY35|A0A151TY35_CAJCA L-fucose kinase; Found in the gene: LotjaGi1g1v0293300 LjG1.1_chr1 71151089 71156913 -
2 domain predictions
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LotjaGi1g1v0321400.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214048 77219779 +
2 domain predictions
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LotjaGi1g1v0321400.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214237 77219587 +
2 domain predictions
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LotjaGi1g1v0321400.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216023 77219294 +
2 domain predictions
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LotjaGi1g1v0321400.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216036 77219294 +
2 domain predictions
 –